RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 A0A1B0GU69 56 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 SLPIP03973 132 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 PRM2P04554 102 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 M0QY20 66 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 MAPKAPK5-AS1Q8N8E1 139 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 LINC00476Q8WZB0 136 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 HCG22E2RYF7 251 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 CRIPTQ9P021 101 aa3.55□□□□□ -1.84
SCN1A-218ENST00000640036 NUPR1O60356 82 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 A0A0C4DFX4 3053 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 DNAH12Q6ZR08 3092 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 TM2D3Q9BRN9 247 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 SPINT4Q6UDR6 99 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 CHD6Q8TD26 2715 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 ATP11AUNQ6ZP68 121 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 ITPR2Q14571 2701 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 Q8IZM0 81 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 UTP20O75691 2785 aaKnown RBP3.54□□□□□ -1.84
SCN1A-218ENST00000640036 LINC01561Q8N1V8 128 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 CDKN2A-AS1Q9UH64 79 aa3.54□□□□□ -1.84
SCN1A-218ENST00000640036 C5orf42Q9H799 3197 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 KMT2BQ9UMN6 2715 aaPredicted RBP3.53□□□□□ -1.84
SCN1A-218ENST00000640036 SCXQ7RTU7 201 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 X6R8D5 127 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 TRBV7-7A0A0K0K1E9 115 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 A0A1B0GUV1 79 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 LINC00588Q9Y4M8 146 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 PRO0628Q9UI54 55 aa3.53□□□□□ -1.84
SCN1A-218ENST00000640036 H0Y9P7 68 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 KRTAP10-11P60412 298 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 C7orf65Q6ZTY9 151 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 LINC00308Q8TCZ7 52 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 LINC00208Q96KT6 92 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 WFDC2Q14508 124 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 ZNF80P51504 273 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-218ENST00000640036 UNQ6190/PRO20217Q6UXQ8 127 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 MT-ATP8P03928 68 aa3.52□□□□□ -1.85
SCN1A-218ENST00000640036 TRAV22A0A0B4J277 110 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 M0R2T5 61 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 LINC00575Q6W349 94 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 Q8NAQ8 132 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 CDC42SE2Q9NRR3 84 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 C19orf73Q9NVV2 129 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 IGLV4-3A0A075B6K6 122 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 A8MZ25 164 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 C6orf99Q4VX62 202 aa3.51□□□□□ -1.85
SCN1A-218ENST00000640036 RNASE3P12724 160 aaKnown RBP3.51□□□□□ -1.85
SCN1A-218ENST00000640036 FXYD2P54710 66 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 LINC00528Q8N1L1 170 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 WFDC13Q8IUB5 93 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 CYP4F30PQ9H0H9 118 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 LINC01554Q52M75 96 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 LCE6AA0A183 80 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 DNAH10OSP0CZ25 163 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 NTM-AS1Q6ZSK4 140 aa3.5□□□□□ -1.85
SCN1A-218ENST00000640036 Q9BRP9 147 aa3.49□□□□□ -1.85
SCN1A-218ENST00000640036 LINC01547P58512 204 aaPredicted RBP3.49□□□□□ -1.85
SCN1A-218ENST00000640036 A0A087WTM6 91 aa3.49□□□□□ -1.85
SCN1A-218ENST00000640036 RPS28P62857 69 aaKnown RBP3.49□□□□□ -1.85
SCN1A-218ENST00000640036 LINC00483Q53H64 154 aa3.49□□□□□ -1.85
SCN1A-218ENST00000640036 ZNF575Q86XF7 245 aa3.49□□□□□ -1.85
SCN1A-218ENST00000640036 ERC2-IT1O76042 136 aa3.48□□□□□ -1.85
SCN1A-218ENST00000640036 EIF4EBP3O60516 100 aaPredicted RBP3.48□□□□□ -1.85
SCN1A-218ENST00000640036 MOBPQ13875 183 aa3.48□□□□□ -1.85
SCN1A-218ENST00000640036 ELOF1P60002 83 aaKnown RBP3.48□□□□□ -1.85
SCN1A-218ENST00000640036 LINC00304Q8N9R0 145 aa3.48□□□□□ -1.85
SCN1A-218ENST00000640036 C11orf1Q9H5F2 150 aa3.48□□□□□ -1.85
SCN1A-218ENST00000640036 C22orf24Q9Y442 160 aa3.48□□□□□ -1.85
SCN1A-218ENST00000640036 C6orf48Q9UBA6 75 aa3.48□□□□□ -1.85
SCN1A-218ENST00000640036 Q6ZRU5 148 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 TRIAP1O43715 76 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 CSNK1G2-AS1Q8NCQ2 148 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 IGHV6-1A0A0B4J1U7 121 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 PRLHP81277 87 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 CAMK2N1Q7Z7J9 78 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 KRTAP1-3Q8IUG1 177 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 A0A087WYN8 130 aa3.47□□□□□ -1.85
SCN1A-218ENST00000640036 IGLV4-60A0A075B6I1 120 aa3.46□□□□□ -1.85
SCN1A-218ENST00000640036 Q8N814 137 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 TSHBP01222 138 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 SMCR5Q8TEV8 140 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 RBM12B-AS1Q9P1G2 102 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 A0A096LNT2 108 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 LOC101927531A0A1B0GV80 90 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 UQCR11O14957 56 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 CHTF8P0CG12 524 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 C1orf64Q8NEQ6 169 aa3.46□□□□□ -1.86
SCN1A-218ENST00000640036 PSORS1C2Q9UIG4 136 aa3.45□□□□□ -1.86
SCN1A-218ENST00000640036 PRR9Q5T870 116 aa3.45□□□□□ -1.86
SCN1A-218ENST00000640036 REV3LO60673 3130 aa3.45□□□□□ -1.86
SCN1A-218ENST00000640036 KRTAP1-1Q07627 177 aa3.45□□□□□ -1.86
SCN1A-218ENST00000640036 LINC00242Q5T6M2 205 aa3.44□□□□□ -1.86
SCN1A-218ENST00000640036 PHF5AQ7RTV0 110 aaKnown RBP3.44□□□□□ -1.86
SCN1A-218ENST00000640036 KTN1-AS1Q86SY8 53 aa3.44□□□□□ -1.86
SCN1A-218ENST00000640036 SMIM11BQ8TCY0 68 aa3.44□□□□□ -1.86
SCN1A-218ENST00000640036 APLNQ9ULZ1 77 aa3.44□□□□□ -1.86
SCN1A-218ENST00000640036 WIPF1O43516 503 aa3.44□□□□□ -1.86
SCN1A-218ENST00000640036 ZNF22P17026 224 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-218ENST00000640036 Q8N3U1 123 aa3.44□□□□□ -1.86
SCN1A-218ENST00000640036 PSPHP1O15172 72 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms