RNA–Protein interactions for RNA: ENST00000637667.1

CLN6-222, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 874 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-222ENST00000637667 M0R378 163 aa11.73□□□□□ -0.53
CLN6-222ENST00000637667 NDUFA5Q16718 116 aa11.73□□□□□ -0.53
CLN6-222ENST00000637667 SVBPQ8N300 66 aa11.73□□□□□ -0.53
CLN6-222ENST00000637667 LINC00158P58513 81 aa11.71□□□□□ -0.53
CLN6-222ENST00000637667 IGKV2D-26A0A0A0MRZ7 120 aa11.7□□□□□ -0.54
CLN6-222ENST00000637667 LINC00304Q8N9R0 145 aa11.7□□□□□ -0.54
CLN6-222ENST00000637667 TRAV12-1A0A0B4J245 112 aa11.69□□□□□ -0.54
CLN6-222ENST00000637667 TMEM223A0PJW6 202 aa11.69□□□□□ -0.54
CLN6-222ENST00000637667 IFI27L1Q96BM0 104 aa11.69□□□□□ -0.54
CLN6-222ENST00000637667 CHCHD1Q96BP2 118 aaKnown RBP11.69□□□□□ -0.54
CLN6-222ENST00000637667 YPEL4Q96NS1 127 aa11.68□□□□□ -0.54
CLN6-222ENST00000637667 A0A0U1RRA0 63 aa11.67□□□□□ -0.54
CLN6-222ENST00000637667 CBLN2Q8IUK8 224 aa11.67□□□□□ -0.54
CLN6-222ENST00000637667 PLEKHB2Q96CS7 222 aa11.67□□□□□ -0.54
CLN6-222ENST00000637667 KRTAP9-2Q9BYQ4 174 aa11.66□□□□□ -0.54
CLN6-222ENST00000637667 RETNLBQ9BQ08 111 aa11.65□□□□□ -0.54
CLN6-222ENST00000637667 HIGD2AQ9BW72 106 aa11.65□□□□□ -0.54
CLN6-222ENST00000637667 MUC2Q02817 5179 aa11.65□□□□□ -0.55
CLN6-222ENST00000637667 ATP6V1G1O75348 118 aa11.63□□□□□ -0.55
CLN6-222ENST00000637667 SMIM13P0DJ93 91 aa11.63□□□□□ -0.55
CLN6-222ENST00000637667 CTAG1AP78358 180 aa11.61□□□□□ -0.55
CLN6-222ENST00000637667 MEIG1Q5JSS6 88 aa11.61□□□□□ -0.55
CLN6-222ENST00000637667 BOD1L2Q8IYS8 172 aa11.61□□□□□ -0.55
CLN6-222ENST00000637667 C3orf22Q8N5N4 141 aa11.61□□□□□ -0.55
CLN6-222ENST00000637667 HSBP1O75506 76 aa11.6□□□□□ -0.55
CLN6-222ENST00000637667 HERV-K104P63124 156 aa11.6□□□□□ -0.55
CLN6-222ENST00000637667 FAM19A2Q8N3H0 131 aa11.6□□□□□ -0.55
CLN6-222ENST00000637667 MIR7-3HGQ8N6C7 128 aa11.6□□□□□ -0.55
CLN6-222ENST00000637667 PRYO14603 147 aa11.59□□□□□ -0.55
CLN6-222ENST00000637667 SPRR4Q96PI1 79 aa11.59□□□□□ -0.55
CLN6-222ENST00000637667 NDUFA12Q9UI09 145 aa11.59□□□□□ -0.55
CLN6-222ENST00000637667 LINC00587B1AMM8 73 aa11.57□□□□□ -0.56
CLN6-222ENST00000637667 NCR3O14931 201 aa11.57□□□□□ -0.56
CLN6-222ENST00000637667 IGLV7-46A0A075B6I9 117 aa11.56□□□□□ -0.56
CLN6-222ENST00000637667 A0A0U1RQV1 116 aa11.56□□□□□ -0.56
CLN6-222ENST00000637667 ZNF706Q9Y5V0 76 aaPredicted RBP11.56□□□□□ -0.56
CLN6-222ENST00000637667 MYMXA0A1B0GTQ4 84 aa11.55□□□□□ -0.56
CLN6-222ENST00000637667 H0Y8G0 127 aa11.55□□□□□ -0.56
CLN6-222ENST00000637667 SPRR1AP35321 89 aa11.55□□□□□ -0.56
CLN6-222ENST00000637667 LINC00337Q8N6G1 96 aa11.55□□□□□ -0.56
CLN6-222ENST00000637667 KCNQ1DNQ9H478 68 aa11.55□□□□□ -0.56
CLN6-222ENST00000637667 TPRXLQ17RH7 258 aa11.54□□□□□ -0.56
CLN6-222ENST00000637667 MAP1LC3CQ9BXW4 147 aa11.54□□□□□ -0.56
CLN6-222ENST00000637667 SPAG11AQ6PDA7 123 aa11.53□□□□□ -0.56
CLN6-222ENST00000637667 TRBV10-3A0A0K0K1G6 114 aa11.52□□□□□ -0.57
CLN6-222ENST00000637667 KRTAP4-16G5E9R7 235 aaPredicted RBP11.52□□□□□ -0.57
CLN6-222ENST00000637667 LEPROTL1O95214 131 aa11.52□□□□□ -0.57
CLN6-222ENST00000637667 TRGC2P03986 189 aa11.52□□□□□ -0.57
CLN6-222ENST00000637667 TSPEAR-AS2P59090 65 aa11.52□□□□□ -0.57
CLN6-222ENST00000637667 CDIP1Q9H305 208 aa11.52□□□□□ -0.57
CLN6-222ENST00000637667 ETDCA0A1B0GVM5 59 aa11.51□□□□□ -0.57
CLN6-222ENST00000637667 SERF1AO75920 110 aa11.51□□□□□ -0.57
CLN6-222ENST00000637667 SMCR5Q8TEV8 140 aa11.51□□□□□ -0.57
CLN6-222ENST00000637667 KRTAP9-6A0A140TA67 174 aa11.5□□□□□ -0.57
CLN6-222ENST00000637667 LEPROTO15243 131 aa11.5□□□□□ -0.57
CLN6-222ENST00000637667 LINC00310P59036 64 aa11.5□□□□□ -0.57
CLN6-222ENST00000637667 PLNP26678 52 aa11.49□□□□□ -0.57
CLN6-222ENST00000637667 C4orf48Q5BLP8 95 aa11.48□□□□□ -0.57
CLN6-222ENST00000637667 DAND5Q8N907 189 aa11.48□□□□□ -0.57
CLN6-222ENST00000637667 PPDPFQ9H3Y8 114 aa11.48□□□□□ -0.57
CLN6-222ENST00000637667 LOC107984156A0A0G2JMH3 177 aa11.47□□□□□ -0.57
CLN6-222ENST00000637667 S100A12P80511 92 aa11.47□□□□□ -0.57
CLN6-222ENST00000637667 ARL17AQ8IVW1 177 aa11.47□□□□□ -0.57
CLN6-222ENST00000637667 Q8NBF4 154 aa11.47□□□□□ -0.57
CLN6-222ENST00000637667 HSPB8Q9UJY1 196 aa11.47□□□□□ -0.57
CLN6-222ENST00000637667 J3QQQ9 107 aa11.46□□□□□ -0.57
CLN6-222ENST00000637667 DPM2O94777 84 aa11.45□□□□□ -0.58
CLN6-222ENST00000637667 HERVK_113P61574 105 aa11.45□□□□□ -0.58
CLN6-222ENST00000637667 MUC17Q685J3 4493 aa11.44□□□□□ -0.58
CLN6-222ENST00000637667 TRBV10-2A0A0K0K1G8 114 aa11.44□□□□□ -0.58
CLN6-222ENST00000637667 B5MCH6 92 aa11.44□□□□□ -0.58
CLN6-222ENST00000637667 FABP4P15090 132 aa11.44□□□□□ -0.58
CLN6-222ENST00000637667 DDTP30046 118 aa11.44□□□□□ -0.58
CLN6-222ENST00000637667 LINC00483Q53H64 154 aa11.44□□□□□ -0.58
CLN6-222ENST00000637667 NMUP48645 174 aa11.43□□□□□ -0.58
CLN6-222ENST00000637667 FP248Q71RG6 208 aaPredicted RBP11.43□□□□□ -0.58
CLN6-222ENST00000637667 PMCHL2Q9BQD1 86 aa11.43□□□□□ -0.58
CLN6-222ENST00000637667 FAT4Q6V0I7 4981 aa11.43□□□□□ -0.58
CLN6-222ENST00000637667 LGALS3P17931 250 aaKnown RBP11.42□□□□□ -0.58
CLN6-222ENST00000637667 GAGE2AQ6NT46 116 aa11.42□□□□□ -0.58
CLN6-222ENST00000637667 ERC2-IT1O76042 136 aa11.41□□□□□ -0.58
CLN6-222ENST00000637667 IGKCP01834 107 aa11.41□□□□□ -0.58
CLN6-222ENST00000637667 MIEN1Q9BRT3 115 aa11.41□□□□□ -0.58
CLN6-222ENST00000637667 SPANXB1Q9NS25 103 aaPredicted RBP11.41□□□□□ -0.58
CLN6-222ENST00000637667 SPINK1P00995 79 aa11.39□□□□□ -0.59
CLN6-222ENST00000637667 NDUFC2O95298 119 aa11.38□□□□□ -0.59
CLN6-222ENST00000637667 Q6ZRX8 168 aa11.38□□□□□ -0.59
CLN6-222ENST00000637667 Q9BRP9 147 aa11.38□□□□□ -0.59
CLN6-222ENST00000637667 IGLV6-57P01721 117 aa11.37□□□□□ -0.59
CLN6-222ENST00000637667 S100A7L2Q5SY68 101 aa11.37□□□□□ -0.59
CLN6-222ENST00000637667 COLCA2A8K830 154 aa11.36□□□□□ -0.59
CLN6-222ENST00000637667 MOBPQ13875 183 aa11.36□□□□□ -0.59
CLN6-222ENST00000637667 IGLV9-49A0A0B4J1Y8 123 aa11.35□□□□□ -0.59
CLN6-222ENST00000637667 LCE2AQ5TA79 106 aaPredicted RBP11.35□□□□□ -0.59
CLN6-222ENST00000637667 KRTAP13-3Q3SY46 172 aa11.34□□□□□ -0.59
CLN6-222ENST00000637667 SOSTDC1Q6X4U4 206 aa11.34□□□□□ -0.59
CLN6-222ENST00000637667 SSBP3-AS1Q7Z2R9 100 aa11.34□□□□□ -0.59
CLN6-222ENST00000637667 TRAV23DV6A0A075B6W5 121 aa11.33□□□□□ -0.6
CLN6-222ENST00000637667 A0A0J9YXY3 114 aa11.33□□□□□ -0.6
CLN6-222ENST00000637667 EIF4EBP3O60516 100 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms