RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 LINC00308Q8TCZ7 52 aa13.13□□□□□ -0.31
CLN3-245ENST00000636172 HIST1H4GQ99525 98 aa13.13□□□□□ -0.31
CLN3-245ENST00000636172 PANO1I0J062 215 aa13.13□□□□□ -0.31
CLN3-245ENST00000636172 KRTAP10-1P60331 282 aa13.13□□□□□ -0.31
CLN3-245ENST00000636172 LOC107984156A0A0G2JMH3 177 aa13.12□□□□□ -0.31
CLN3-245ENST00000636172 ARL17AQ8IVW1 177 aa13.12□□□□□ -0.31
CLN3-245ENST00000636172 MUSTN1Q8IVN3 82 aa13.11□□□□□ -0.31
CLN3-245ENST00000636172 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.11□□□□□ -0.31
CLN3-245ENST00000636172 IFITM1P13164 125 aa13.1□□□□□ -0.31
CLN3-245ENST00000636172 SPACA4Q8TDM5 124 aa13.09□□□□□ -0.31
CLN3-245ENST00000636172 LINC00474Q9P2X8 69 aa13.09□□□□□ -0.31
CLN3-245ENST00000636172 DNAH8Q96JB1 4490 aa13.09□□□□□ -0.31
CLN3-245ENST00000636172 DYNC1H1Q14204 4646 aaKnown RBP13.08□□□□□ -0.31
CLN3-245ENST00000636172 DDTP30046 118 aa13.08□□□□□ -0.31
CLN3-245ENST00000636172 TAL2Q16559 108 aa13.08□□□□□ -0.31
CLN3-245ENST00000636172 Q8NDZ9 215 aa13.08□□□□□ -0.31
CLN3-245ENST00000636172 LRP1BQ9NZR2 4599 aa13.08□□□□□ -0.32
CLN3-245ENST00000636172 FAM168BA1KXE4 195 aa13.08□□□□□ -0.32
CLN3-245ENST00000636172 HSD52Q0P140 79 aa13.08□□□□□ -0.32
CLN3-245ENST00000636172 COPS9Q8WXC6 57 aa13.07□□□□□ -0.32
CLN3-245ENST00000636172 PPDPFQ9H3Y8 114 aa13.07□□□□□ -0.32
CLN3-245ENST00000636172 CTAG1AP78358 180 aa13.06□□□□□ -0.32
CLN3-245ENST00000636172 CEND1Q8N111 149 aa13.06□□□□□ -0.32
CLN3-245ENST00000636172 FAM30AQ9NZY2 134 aa13.06□□□□□ -0.32
CLN3-245ENST00000636172 SERTAD4-AS1Q5TG53 156 aa13.05□□□□□ -0.32
CLN3-245ENST00000636172 KRTAP7-1Q8IUC3 87 aa13.05□□□□□ -0.32
CLN3-245ENST00000636172 HERC2O95714 4834 aa13.04□□□□□ -0.32
CLN3-245ENST00000636172 A0A1W2PNN7 141 aa13.04□□□□□ -0.32
CLN3-245ENST00000636172 Q6ZSA8 131 aa13.04□□□□□ -0.32
CLN3-245ENST00000636172 PLA2G2DQ9UNK4 145 aa13.04□□□□□ -0.32
CLN3-245ENST00000636172 VPREB1P12018 145 aa13.03□□□□□ -0.32
CLN3-245ENST00000636172 RPL24P83731 157 aaKnown RBP13.03□□□□□ -0.32
CLN3-245ENST00000636172 FAM19A5Q7Z5A7 132 aaPredicted RBP13.03□□□□□ -0.32
CLN3-245ENST00000636172 A4D1N5 150 aa13.02□□□□□ -0.33
CLN3-245ENST00000636172 DPH3Q96FX2 82 aa13.02□□□□□ -0.33
CLN3-245ENST00000636172 NDUFC2O95298 119 aa13.01□□□□□ -0.33
CLN3-245ENST00000636172 FXYD2P54710 66 aa13.01□□□□□ -0.33
CLN3-245ENST00000636172 PRR3P79522 188 aaKnown RBP13.01□□□□□ -0.33
CLN3-245ENST00000636172 A0A087WYN8 130 aa13□□□□□ -0.33
CLN3-245ENST00000636172 PCP4L1A6NKN8 68 aa13□□□□□ -0.33
CLN3-245ENST00000636172 IGLV5-37A0A075B6J1 123 aa12.99□□□□□ -0.33
CLN3-245ENST00000636172 IGKV2-28A0A075B6P5 120 aa12.98□□□□□ -0.33
CLN3-245ENST00000636172 IGKV2D-28P01615 120 aa12.98□□□□□ -0.33
CLN3-245ENST00000636172 EPM2AB3EWF7 344 aa12.98□□□□□ -0.33
CLN3-245ENST00000636172 NCR3O14931 201 aa12.98□□□□□ -0.33
CLN3-245ENST00000636172 PLAC8Q9NZF1 115 aa12.98□□□□□ -0.33
CLN3-245ENST00000636172 HINT1P49773 126 aaPredicted RBP12.97□□□□□ -0.33
CLN3-245ENST00000636172 BVES-AS1Q5T3Y7 98 aa12.97□□□□□ -0.33
CLN3-245ENST00000636172 NKAPP1Q8N9T2 125 aa12.97□□□□□ -0.33
CLN3-245ENST00000636172 C22orf24Q9Y442 160 aa12.97□□□□□ -0.33
CLN3-245ENST00000636172 M0QXV9 152 aa12.95□□□□□ -0.34
CLN3-245ENST00000636172 M0R143 59 aa12.95□□□□□ -0.34
CLN3-245ENST00000636172 SCXQ7RTU7 201 aa12.95□□□□□ -0.34
CLN3-245ENST00000636172 CIRBP-AS1Q8TBR5 109 aa12.95□□□□□ -0.34
CLN3-245ENST00000636172 TRBV10-2A0A0K0K1G8 114 aa12.94□□□□□ -0.34
CLN3-245ENST00000636172 TMEM238LA0A1B0GVL6 79 aa12.94□□□□□ -0.34
CLN3-245ENST00000636172 A6NJY4 79 aa12.94□□□□□ -0.34
CLN3-245ENST00000636172 HAMPP81172 84 aa12.94□□□□□ -0.34
CLN3-245ENST00000636172 LINC00337Q8N6G1 96 aa12.93□□□□□ -0.34
CLN3-245ENST00000636172 C7orf33Q8WU49 177 aa12.93□□□□□ -0.34
CLN3-245ENST00000636172 M0R378 163 aa12.93□□□□□ -0.34
CLN3-245ENST00000636172 MRPL55Q7Z7F7 128 aaKnown RBP12.93□□□□□ -0.34
CLN3-245ENST00000636172 APOBP04114 4563 aaKnown RBP12.92□□□□□ -0.34
CLN3-245ENST00000636172 CFC1BP0CG36 223 aa12.92□□□□□ -0.34
CLN3-245ENST00000636172 CFC1P0CG37 223 aa12.92□□□□□ -0.34
CLN3-245ENST00000636172 PHF5AQ7RTV0 110 aaKnown RBP12.92□□□□□ -0.34
CLN3-245ENST00000636172 KIAA1109Q2LD37 5005 aa12.91□□□□□ -0.34
CLN3-245ENST00000636172 GAGE10A6NGK3 116 aa12.91□□□□□ -0.34
CLN3-245ENST00000636172 NHP2Q9NX24 153 aaKnown RBP12.91□□□□□ -0.34
CLN3-245ENST00000636172 LINC00167Q96N53 147 aa12.9□□□□□ -0.34
CLN3-245ENST00000636172 A0A0B4J2C4 111 aa12.89□□□□□ -0.35
CLN3-245ENST00000636172 A0A1B0GWB2 263 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 TRBV10-3A0A0K0K1G6 114 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 A6NDN8 102 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 K7ERJ3 54 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 XGP55808 180 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 BATFQ16520 125 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 LBHQ53QV2 105 aaPredicted RBP12.88□□□□□ -0.35
CLN3-245ENST00000636172 OR13C6PQ8NH95 151 aa12.88□□□□□ -0.35
CLN3-245ENST00000636172 TRAV13-2A0A0B4J235 113 aa12.87□□□□□ -0.35
CLN3-245ENST00000636172 IGLV6-57P01721 117 aa12.87□□□□□ -0.35
CLN3-245ENST00000636172 S100A7L2Q5SY68 101 aa12.87□□□□□ -0.35
CLN3-245ENST00000636172 RAB37Q96AX2 223 aa12.87□□□□□ -0.35
CLN3-245ENST00000636172 RPL37AP8A6NKH3 93 aa12.86□□□□□ -0.35
CLN3-245ENST00000636172 IGLV1-50A0A075B6I6 118 aa12.84□□□□□ -0.35
CLN3-245ENST00000636172 RPL13AP40429 203 aaKnown RBP12.84□□□□□ -0.35
CLN3-245ENST00000636172 KRTAP11-1Q8IUC1 163 aa12.84□□□□□ -0.35
CLN3-245ENST00000636172 SNHG12Q9BXW3 62 aa12.84□□□□□ -0.35
CLN3-245ENST00000636172 TMEM126AQ9H061 195 aa12.84□□□□□ -0.35
CLN3-245ENST00000636172 UBE2BP63146 152 aa12.83□□□□□ -0.36
CLN3-245ENST00000636172 KRTAP17-1Q9BYP8 105 aa12.83□□□□□ -0.36
CLN3-245ENST00000636172 PRO1854Q9UHT4 67 aa12.83□□□□□ -0.36
CLN3-245ENST00000636172 KCNQ1DNQ9H478 68 aa12.8□□□□□ -0.36
CLN3-245ENST00000636172 TRAV23DV6A0A075B6W5 121 aa12.78□□□□□ -0.36
CLN3-245ENST00000636172 H7C2G1 150 aa12.78□□□□□ -0.36
CLN3-245ENST00000636172 CDK2AP2O75956 126 aa12.78□□□□□ -0.36
CLN3-245ENST00000636172 SMIM11BQ8TCY0 68 aa12.78□□□□□ -0.36
CLN3-245ENST00000636172 PRYO14603 147 aa12.77□□□□□ -0.37
CLN3-245ENST00000636172 TSPAN13O95857 204 aa12.74□□□□□ -0.37
CLN3-245ENST00000636172 Q1RN00 199 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms