RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 S100A7L2Q5SY68 101 aa8.61□□□□□ -1.03
LINC00540-203ENST00000631321 LYPD5Q6UWN5 251 aa8.6□□□□□ -1.03
LINC00540-203ENST00000631321 C3orf22Q8N5N4 141 aa8.6□□□□□ -1.03
LINC00540-203ENST00000631321 TENM1Q9UKZ4 2725 aa8.6□□□□□ -1.03
LINC00540-203ENST00000631321 UQCRQO14949 82 aa8.59□□□□□ -1.03
LINC00540-203ENST00000631321 ATOX1O00244 68 aa8.58□□□□□ -1.04
LINC00540-203ENST00000631321 LINC00526Q96FQ7 95 aa8.58□□□□□ -1.04
LINC00540-203ENST00000631321 HECTD1Q9ULT8 2610 aa8.58□□□□□ -1.04
LINC00540-203ENST00000631321 IGKV3D-7A0A0C4DH55 119 aa8.58□□□□□ -1.04
LINC00540-203ENST00000631321 H3BNG1 76 aa8.58□□□□□ -1.04
LINC00540-203ENST00000631321 C2orf48Q96LS8 159 aa8.57□□□□□ -1.04
LINC00540-203ENST00000631321 C6orf48Q9UBA6 75 aa8.57□□□□□ -1.04
LINC00540-203ENST00000631321 hADV29S1A0JD25 119 aa8.56□□□□□ -1.04
LINC00540-203ENST00000631321 TRRAPQ9Y4A5 3859 aa8.56□□□□□ -1.04
LINC00540-203ENST00000631321 COX7CP15954 63 aa8.56□□□□□ -1.04
LINC00540-203ENST00000631321 RPL18AQ02543 176 aaKnown RBP8.56□□□□□ -1.04
LINC00540-203ENST00000631321 ATP5EP2Q5VTU8 51 aa8.55□□□□□ -1.04
LINC00540-203ENST00000631321 ZNF561-AS1K7EIQ3 104 aa8.54□□□□□ -1.04
LINC00540-203ENST00000631321 C9orf153Q5TBE3 101 aa8.54□□□□□ -1.04
LINC00540-203ENST00000631321 H3BQ85 93 aa8.54□□□□□ -1.04
LINC00540-203ENST00000631321 KRTAP26-1Q6PEX3 210 aa8.54□□□□□ -1.04
LINC00540-203ENST00000631321 LOC110117498A0A087WWA1 95 aa8.53□□□□□ -1.04
LINC00540-203ENST00000631321 ATRQ13535 2644 aa8.53□□□□□ -1.04
LINC00540-203ENST00000631321 TRBV10-3A0A0K0K1G6 114 aa8.52□□□□□ -1.05
LINC00540-203ENST00000631321 Q6ZQT0 140 aa8.52□□□□□ -1.05
LINC00540-203ENST00000631321 TEP1Q99973 2627 aaKnown RBP8.52□□□□□ -1.05
LINC00540-203ENST00000631321 HIVEP1P15822 2718 aa8.52□□□□□ -1.05
LINC00540-203ENST00000631321 RBM3P98179 157 aaKnown RBP8.52□□□□□ -1.05
LINC00540-203ENST00000631321 KPRPQ5T749 579 aaPredicted RBP8.52□□□□□ -1.05
LINC00540-203ENST00000631321 WFDC10BQ8IUB3 73 aa8.52□□□□□ -1.05
LINC00540-203ENST00000631321 TRAV23DV6A0A075B6W5 121 aa8.51□□□□□ -1.05
LINC00540-203ENST00000631321 CRYGAP11844 174 aa8.51□□□□□ -1.05
LINC00540-203ENST00000631321 A0A087WVE0 104 aa8.51□□□□□ -1.05
LINC00540-203ENST00000631321 C3orf56Q8N813 242 aa8.51□□□□□ -1.05
LINC00540-203ENST00000631321 DIRC1Q969H9 104 aa8.51□□□□□ -1.05
LINC00540-203ENST00000631321 EGFEM1PQ0D2K5 195 aa8.5□□□□□ -1.05
LINC00540-203ENST00000631321 XAGE1AQ9HD64 81 aa8.5□□□□□ -1.05
LINC00540-203ENST00000631321 TRBV7-6A0A0J9YX20 115 aa8.5□□□□□ -1.05
LINC00540-203ENST00000631321 USP17L23D6RBM5 183 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 VPREB1P12018 145 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 Q6ZQY7 126 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 UBL5Q9BZL1 73 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 RETNQ9HD89 108 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 ZNF73O43830 326 aaPredicted RBP8.49□□□□□ -1.05
LINC00540-203ENST00000631321 KRTAP10-11P60412 298 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 CAMK2N2Q96S95 79 aa8.49□□□□□ -1.05
LINC00540-203ENST00000631321 Q6ZTC4 211 aa8.48□□□□□ -1.05
LINC00540-203ENST00000631321 SERP2Q8N6R1 65 aa8.48□□□□□ -1.05
LINC00540-203ENST00000631321 C15orf56Q8N910 161 aa8.48□□□□□ -1.05
LINC00540-203ENST00000631321 LAMTOR3Q9UHA4 124 aa8.48□□□□□ -1.05
LINC00540-203ENST00000631321 PDE6GP18545 87 aa8.48□□□□□ -1.05
LINC00540-203ENST00000631321 HIGD2BQ4VC39 106 aa8.48□□□□□ -1.05
LINC00540-203ENST00000631321 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.48□□□□□ -1.05
LINC00540-203ENST00000631321 COX7BP24311 80 aa8.47□□□□□ -1.05
LINC00540-203ENST00000631321 ELOF1P60002 83 aaKnown RBP8.47□□□□□ -1.05
LINC00540-203ENST00000631321 OXLD1Q5BKU9 147 aa8.46□□□□□ -1.05
LINC00540-203ENST00000631321 SMIM20Q8N5G0 67 aa8.46□□□□□ -1.05
LINC00540-203ENST00000631321 M0R378 163 aa8.46□□□□□ -1.06
LINC00540-203ENST00000631321 Q6ZRU5 148 aa8.46□□□□□ -1.06
LINC00540-203ENST00000631321 F8WDY8 70 aa8.45□□□□□ -1.06
LINC00540-203ENST00000631321 ESRGQ1W209 222 aa8.45□□□□□ -1.06
LINC00540-203ENST00000631321 NDUFC2-KCTD14E9PQ53 114 aa8.45□□□□□ -1.06
LINC00540-203ENST00000631321 DSCR8Q96T75 97 aa8.45□□□□□ -1.06
LINC00540-203ENST00000631321 UPK3BQ9BT76 320 aa8.45□□□□□ -1.06
LINC00540-203ENST00000631321 GHRHP01286 108 aa8.44□□□□□ -1.06
LINC00540-203ENST00000631321 LINC01556Q5JQF7 62 aa8.44□□□□□ -1.06
LINC00540-203ENST00000631321 M0R2N4 97 aa8.43□□□□□ -1.06
LINC00540-203ENST00000631321 FAM19A1Q7Z5A9 133 aa8.43□□□□□ -1.06
LINC00540-203ENST00000631321 TRBV7-4A0A0J9YYF1 115 aa8.42□□□□□ -1.06
LINC00540-203ENST00000631321 C1orf43Q9BWL3 253 aa8.42□□□□□ -1.06
LINC00540-203ENST00000631321 SVIPQ8NHG7 77 aa8.42□□□□□ -1.06
LINC00540-203ENST00000631321 LINC00528Q8N1L1 170 aa8.41□□□□□ -1.06
LINC00540-203ENST00000631321 Q6ZVQ6 151 aa8.41□□□□□ -1.06
LINC00540-203ENST00000631321 CMYA5Q8N3K9 4069 aa8.41□□□□□ -1.06
LINC00540-203ENST00000631321 ANK2Q01484 3957 aa8.4□□□□□ -1.06
LINC00540-203ENST00000631321 LINC01547P58512 204 aaPredicted RBP8.4□□□□□ -1.07
LINC00540-203ENST00000631321 Q6ZRP5 223 aa8.4□□□□□ -1.07
LINC00540-203ENST00000631321 CYSTM1Q9H1C7 97 aa8.4□□□□□ -1.07
LINC00540-203ENST00000631321 DNAH3Q8TD57 4116 aa8.4□□□□□ -1.07
LINC00540-203ENST00000631321 DEFB131BA0A096LNP1 70 aa8.39□□□□□ -1.07
LINC00540-203ENST00000631321 BCE1O60756 84 aa8.39□□□□□ -1.07
LINC00540-203ENST00000631321 CXCL6P80162 114 aa8.38□□□□□ -1.07
LINC00540-203ENST00000631321 SYCNQ0VAF6 134 aa8.38□□□□□ -1.07
LINC00540-203ENST00000631321 IGKV2D-24A0A075B6R9 120 aa8.38□□□□□ -1.07
LINC00540-203ENST00000631321 DNAH10OSP0CZ25 163 aa8.38□□□□□ -1.07
LINC00540-203ENST00000631321 C11orf45Q8TAV5 145 aa8.37□□□□□ -1.07
LINC00540-203ENST00000631321 TMEM258P61165 79 aa8.36□□□□□ -1.07
LINC00540-203ENST00000631321 KCNQ1DNQ9H478 68 aa8.36□□□□□ -1.07
LINC00540-203ENST00000631321 HAMPP81172 84 aa8.35□□□□□ -1.07
LINC00540-203ENST00000631321 TLX1NBP0CAT3 122 aa8.34□□□□□ -1.07
LINC00540-203ENST00000631321 KRTAP24-1Q3LI83 254 aa8.34□□□□□ -1.07
LINC00540-203ENST00000631321 RPS28P62857 69 aaKnown RBP8.34□□□□□ -1.07
LINC00540-203ENST00000631321 PLA2G2DQ9UNK4 145 aa8.33□□□□□ -1.08
LINC00540-203ENST00000631321 TENM3Q9P273 2699 aa8.33□□□□□ -1.08
LINC00540-203ENST00000631321 J3KT08 172 aa8.32□□□□□ -1.08
LINC00540-203ENST00000631321 SERTAD4-AS1Q5TG53 156 aa8.32□□□□□ -1.08
LINC00540-203ENST00000631321 PKD1L1Q8TDX9 2849 aa8.32□□□□□ -1.08
LINC00540-203ENST00000631321 C7orf33Q8WU49 177 aa8.32□□□□□ -1.08
LINC00540-203ENST00000631321 TRAV7A0A075B6U4 112 aa8.31□□□□□ -1.08
LINC00540-203ENST00000631321 NKAPP1Q8N9T2 125 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms