RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 BCE1O60756 84 aa10.59□□□□□ -0.71
PDLIM2-220ENST00000622226 GOLGB1Q14789 3259 aaKnown RBP10.59□□□□□ -0.71
PDLIM2-220ENST00000622226 LINC00476Q8WZB0 136 aa10.58□□□□□ -0.72
PDLIM2-220ENST00000622226 EP400Q96L91 3159 aa10.57□□□□□ -0.72
PDLIM2-220ENST00000622226 LRP4O75096 1905 aa10.57□□□□□ -0.72
PDLIM2-220ENST00000622226 COA5Q86WW8 74 aa10.57□□□□□ -0.72
PDLIM2-220ENST00000622226 C11orf72Q8NBR9 251 aa10.56□□□□□ -0.72
PDLIM2-220ENST00000622226 ST20-AS1Q8NBB2 130 aa10.56□□□□□ -0.72
PDLIM2-220ENST00000622226 F8WDY8 70 aa10.55□□□□□ -0.72
PDLIM2-220ENST00000622226 J3QL48 77 aa10.55□□□□□ -0.72
PDLIM2-220ENST00000622226 KIF25-AS1Q9Y6Z4 181 aa10.55□□□□□ -0.72
PDLIM2-220ENST00000622226 IGHV3OR16-9A0A0B4J2B5 98 aa10.55□□□□□ -0.72
PDLIM2-220ENST00000622226 MYO9AB2RTY4 2548 aa10.55□□□□□ -0.72
PDLIM2-220ENST00000622226 LINC00336Q6ZUF6 198 aa10.55□□□□□ -0.72
PDLIM2-220ENST00000622226 LINC00313P59037 77 aa10.54□□□□□ -0.72
PDLIM2-220ENST00000622226 APLNQ9ULZ1 77 aa10.54□□□□□ -0.72
PDLIM2-220ENST00000622226 NAV2Q8IVL1 2488 aa10.54□□□□□ -0.72
PDLIM2-220ENST00000622226 F8P00451 2351 aa10.53□□□□□ -0.72
PDLIM2-220ENST00000622226 CHTF8P0CG12 524 aa10.53□□□□□ -0.72
PDLIM2-220ENST00000622226 ELOF1P60002 83 aaKnown RBP10.53□□□□□ -0.72
PDLIM2-220ENST00000622226 Q8NBF4 154 aa10.53□□□□□ -0.72
PDLIM2-220ENST00000622226 TRBV7-4A0A0J9YYF1 115 aa10.52□□□□□ -0.73
PDLIM2-220ENST00000622226 H3BPC8 53 aa10.52□□□□□ -0.73
PDLIM2-220ENST00000622226 PHF5AQ7RTV0 110 aaKnown RBP10.51□□□□□ -0.73
PDLIM2-220ENST00000622226 FN1P02751 2386 aaKnown RBP10.51□□□□□ -0.73
PDLIM2-220ENST00000622226 LOC110117498A0A087WWA1 95 aa10.5□□□□□ -0.73
PDLIM2-220ENST00000622226 A0A1W2PPR1 153 aa10.5□□□□□ -0.73
PDLIM2-220ENST00000622226 CD164Q04900 197 aa10.5□□□□□ -0.73
PDLIM2-220ENST00000622226 PTPRSQ13332 1948 aa10.49□□□□□ -0.73
PDLIM2-220ENST00000622226 K7EQZ3 153 aa10.49□□□□□ -0.73
PDLIM2-220ENST00000622226 UQCR11O14957 56 aa10.49□□□□□ -0.73
PDLIM2-220ENST00000622226 CRIPTQ9P021 101 aa10.49□□□□□ -0.73
PDLIM2-220ENST00000622226 LINC01546A6NGU7 62 aa10.48□□□□□ -0.73
PDLIM2-220ENST00000622226 Q96NJ1 140 aa10.47□□□□□ -0.73
PDLIM2-220ENST00000622226 PIEZO2Q9H5I5 2752 aa10.47□□□□□ -0.73
PDLIM2-220ENST00000622226 MIR22HGQ0VDD5 57 aa10.46□□□□□ -0.73
PDLIM2-220ENST00000622226 CYP4F30PQ9H0H9 118 aa10.46□□□□□ -0.73
PDLIM2-220ENST00000622226 C16orf90A8MZG2 172 aa10.46□□□□□ -0.74
PDLIM2-220ENST00000622226 KRTAP24-1Q3LI83 254 aa10.46□□□□□ -0.74
PDLIM2-220ENST00000622226 LINC00315P59091 139 aa10.45□□□□□ -0.74
PDLIM2-220ENST00000622226 TLN2Q9Y4G6 2542 aa10.45□□□□□ -0.74
PDLIM2-220ENST00000622226 Q6ZRX8 168 aa10.45□□□□□ -0.74
PDLIM2-220ENST00000622226 LOC101927531A0A1B0GV80 90 aa10.44□□□□□ -0.74
PDLIM2-220ENST00000622226 EPM2AB3EWF7 344 aa10.44□□□□□ -0.74
PDLIM2-220ENST00000622226 PTPRBP23467 1997 aa10.43□□□□□ -0.74
PDLIM2-220ENST00000622226 ADAMTS20P59510 1910 aa10.43□□□□□ -0.74
PDLIM2-220ENST00000622226 KTN1-AS1Q86SY8 53 aa10.42□□□□□ -0.74
PDLIM2-220ENST00000622226 FHL3Q13643 280 aa10.42□□□□□ -0.74
PDLIM2-220ENST00000622226 FAM229AH3BQW9 127 aa10.41□□□□□ -0.74
PDLIM2-220ENST00000622226 C9orf129Q5T035 196 aaKnown RBP10.4□□□□□ -0.74
PDLIM2-220ENST00000622226 LCA10Q71F78 164 aa10.39□□□□□ -0.75
PDLIM2-220ENST00000622226 IGLV5-45A0A087WSX0 123 aa10.39□□□□□ -0.75
PDLIM2-220ENST00000622226 TLN1Q9Y490 2541 aaKnown RBP10.39□□□□□ -0.75
PDLIM2-220ENST00000622226 A0A1B0GW54 56 aa10.38□□□□□ -0.75
PDLIM2-220ENST00000622226 A8MWP4 228 aa10.37□□□□□ -0.75
PDLIM2-220ENST00000622226 TYMSOSQ8TAI1 123 aa10.37□□□□□ -0.75
PDLIM2-220ENST00000622226 IGLV6-57P01721 117 aa10.36□□□□□ -0.75
PDLIM2-220ENST00000622226 CPAMD8Q8IZJ3 1885 aa10.36□□□□□ -0.75
PDLIM2-220ENST00000622226 MRPL34Q9BQ48 92 aaKnown RBP10.36□□□□□ -0.75
PDLIM2-220ENST00000622226 WDR87Q6ZQQ6 2873 aa10.35□□□□□ -0.75
PDLIM2-220ENST00000622226 NCOR2Q9Y618 2525 aa10.34□□□□□ -0.75
PDLIM2-220ENST00000622226 FAM168BA1KXE4 195 aa10.34□□□□□ -0.75
PDLIM2-220ENST00000622226 JMJD1CQ15652 2540 aa10.34□□□□□ -0.75
PDLIM2-220ENST00000622226 C16orf95Q9H693 158 aa10.32□□□□□ -0.76
PDLIM2-220ENST00000622226 ERC2-IT1O76042 136 aa10.31□□□□□ -0.76
PDLIM2-220ENST00000622226 IGF2RP11717 2491 aa10.31□□□□□ -0.76
PDLIM2-220ENST00000622226 LITAFQ99732 161 aa10.31□□□□□ -0.76
PDLIM2-220ENST00000622226 DSCR10P59022 87 aa10.3□□□□□ -0.76
PDLIM2-220ENST00000622226 A0A0D9SG42 100 aa10.3□□□□□ -0.76
PDLIM2-220ENST00000622226 Q6ZRP5 223 aa10.3□□□□□ -0.76
PDLIM2-220ENST00000622226 A0A0G2JQZ4 141 aa10.3□□□□□ -0.76
PDLIM2-220ENST00000622226 A0A1W2PNN7 141 aa10.3□□□□□ -0.76
PDLIM2-220ENST00000622226 H7BZZ5 65 aa10.29□□□□□ -0.76
PDLIM2-220ENST00000622226 SETD2Q9BYW2 2564 aaPredicted RBP10.28□□□□□ -0.76
PDLIM2-220ENST00000622226 KLKP1Q107X0 134 aa10.28□□□□□ -0.76
PDLIM2-220ENST00000622226 UTRNP46939 3433 aa10.26□□□□□ -0.77
PDLIM2-220ENST00000622226 ABCA12Q86UK0 2595 aa10.26□□□□□ -0.77
PDLIM2-220ENST00000622226 RTL8CO15255 209 aa10.25□□□□□ -0.77
PDLIM2-220ENST00000622226 ZFYVE26Q68DK2 2539 aa10.25□□□□□ -0.77
PDLIM2-220ENST00000622226 EIF4EBP3O60516 100 aaPredicted RBP10.25□□□□□ -0.77
PDLIM2-220ENST00000622226 LINC01554Q52M75 96 aa10.25□□□□□ -0.77
PDLIM2-220ENST00000622226 SMR3BP02814 79 aaPredicted RBP10.24□□□□□ -0.77
PDLIM2-220ENST00000622226 LRRK2Q5S007 2527 aa10.24□□□□□ -0.77
PDLIM2-220ENST00000622226 WWC2-AS2Q96NR7 200 aa10.23□□□□□ -0.77
PDLIM2-220ENST00000622226 ACANP16112 2415 aa10.23□□□□□ -0.77
PDLIM2-220ENST00000622226 PKD1L2Q7Z442 2459 aa10.23□□□□□ -0.77
PDLIM2-220ENST00000622226 IGFL1Q6UW32 110 aa10.22□□□□□ -0.77
PDLIM2-220ENST00000622226 C8orf17Q9NRJ1 99 aa10.21□□□□□ -0.77
PDLIM2-220ENST00000622226 CDC42SE1Q9NRR8 79 aa10.21□□□□□ -0.78
PDLIM2-220ENST00000622226 C9orf92A6NGG3 77 aa10.2□□□□□ -0.78
PDLIM2-220ENST00000622226 PRR15Q8IV56 129 aa10.19□□□□□ -0.78
PDLIM2-220ENST00000622226 OBSCN-AS1Q96MR7 158 aa10.19□□□□□ -0.78
PDLIM2-220ENST00000622226 LUZP6Q538Z0 58 aa10.18□□□□□ -0.78
PDLIM2-220ENST00000622226 COX6B2Q6YFQ2 88 aa10.18□□□□□ -0.78
PDLIM2-220ENST00000622226 H3BS24 57 aa10.16□□□□□ -0.78
PDLIM2-220ENST00000622226 WIPF1O43516 503 aa10.16□□□□□ -0.78
PDLIM2-220ENST00000622226 LINC00588Q9Y4M8 146 aa10.15□□□□□ -0.78
PDLIM2-220ENST00000622226 GVQW2A0A096LPI5 108 aaPredicted RBP10.15□□□□□ -0.78
PDLIM2-220ENST00000622226 MUC22E2RYF6 1773 aaPredicted RBP10.14□□□□□ -0.79
PDLIM2-220ENST00000622226 IGLV1-50A0A075B6I6 118 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms