RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SLPIP03973 132 aa10.57□□□□□ -0.72
CPSF1-213ENST00000620219 C6orf99Q4VX62 202 aa10.57□□□□□ -0.72
CPSF1-213ENST00000620219 TEX49A0A1B0GTD5 131 aa10.56□□□□□ -0.72
CPSF1-213ENST00000620219 UBE2BP63146 152 aa10.56□□□□□ -0.72
CPSF1-213ENST00000620219 TEN1Q86WV5 123 aa10.56□□□□□ -0.72
CPSF1-213ENST00000620219 PPDPFLQ8WWR9 84 aa10.56□□□□□ -0.72
CPSF1-213ENST00000620219 PRR34Q9NV39 138 aa10.56□□□□□ -0.72
CPSF1-213ENST00000620219 TTC32Q5I0X7 151 aa10.55□□□□□ -0.72
CPSF1-213ENST00000620219 FAM19A3Q7Z5A8 133 aa10.55□□□□□ -0.72
CPSF1-213ENST00000620219 C6orf48Q9UBA6 75 aa10.55□□□□□ -0.72
CPSF1-213ENST00000620219 DEFB105AQ8NG35 78 aa10.54□□□□□ -0.72
CPSF1-213ENST00000620219 COX17Q14061 63 aa10.54□□□□□ -0.72
CPSF1-213ENST00000620219 SMCPP49901 116 aaPredicted RBP10.54□□□□□ -0.72
CPSF1-213ENST00000620219 DNAH10OSP0CZ25 163 aa10.54□□□□□ -0.72
CPSF1-213ENST00000620219 TENM2Q9NT68 2774 aa10.53□□□□□ -0.72
CPSF1-213ENST00000620219 RPL37AP8A6NKH3 93 aa10.53□□□□□ -0.72
CPSF1-213ENST00000620219 H0YGX0 51 aa10.53□□□□□ -0.72
CPSF1-213ENST00000620219 TRBV10-2A0A0K0K1G8 114 aa10.52□□□□□ -0.73
CPSF1-213ENST00000620219 KIAA0087Q14695 138 aa10.52□□□□□ -0.73
CPSF1-213ENST00000620219 CASC10Q5T4H9 136 aa10.52□□□□□ -0.73
CPSF1-213ENST00000620219 LINC01561Q8N1V8 128 aa10.51□□□□□ -0.73
CPSF1-213ENST00000620219 DIRC1Q969H9 104 aa10.5□□□□□ -0.73
CPSF1-213ENST00000620219 GAGE2AQ6NT46 116 aa10.5□□□□□ -0.73
CPSF1-213ENST00000620219 PRO0461Q9UI25 63 aa10.5□□□□□ -0.73
CPSF1-213ENST00000620219 LST1O00453 97 aa10.5□□□□□ -0.73
CPSF1-213ENST00000620219 ETDCA0A1B0GVM5 59 aa10.49□□□□□ -0.73
CPSF1-213ENST00000620219 NDUFC2-KCTD14E9PQ53 114 aa10.49□□□□□ -0.73
CPSF1-213ENST00000620219 TRBV10-3A0A0K0K1G6 114 aa10.49□□□□□ -0.73
CPSF1-213ENST00000620219 ORMDL1Q9P0S3 153 aa10.48□□□□□ -0.73
CPSF1-213ENST00000620219 C14orf177Q52M58 125 aa10.47□□□□□ -0.73
CPSF1-213ENST00000620219 SIGMAR1Q99720 223 aa10.47□□□□□ -0.73
CPSF1-213ENST00000620219 A0A087WYN8 130 aa10.46□□□□□ -0.74
CPSF1-213ENST00000620219 C2orf48Q96LS8 159 aa10.46□□□□□ -0.74
CPSF1-213ENST00000620219 FAM218AQ96MZ4 157 aa10.46□□□□□ -0.74
CPSF1-213ENST00000620219 TRAV23DV6A0A075B6W5 121 aa10.45□□□□□ -0.74
CPSF1-213ENST00000620219 C15orf56Q8N910 161 aa10.45□□□□□ -0.74
CPSF1-213ENST00000620219 MUC7Q8TAX7 377 aa10.45□□□□□ -0.74
CPSF1-213ENST00000620219 COX7BP24311 80 aa10.44□□□□□ -0.74
CPSF1-213ENST00000620219 APLNQ9ULZ1 77 aa10.44□□□□□ -0.74
CPSF1-213ENST00000620219 NBDYA0A0U1RRE5 68 aa10.43□□□□□ -0.74
CPSF1-213ENST00000620219 LOC107984640A0A0U1RRK4 108 aa10.43□□□□□ -0.74
CPSF1-213ENST00000620219 TGP01266 2768 aa10.43□□□□□ -0.74
CPSF1-213ENST00000620219 M0R378 163 aa10.43□□□□□ -0.74
CPSF1-213ENST00000620219 H3BT86 120 aa10.42□□□□□ -0.74
CPSF1-213ENST00000620219 RPL28P46779 137 aaKnown RBP10.42□□□□□ -0.74
CPSF1-213ENST00000620219 hADV29S1A0JD25 119 aa10.41□□□□□ -0.74
CPSF1-213ENST00000620219 Q6ZRP5 223 aa10.41□□□□□ -0.74
CPSF1-213ENST00000620219 HIGD2AQ9BW72 106 aa10.41□□□□□ -0.74
CPSF1-213ENST00000620219 FUSP35637 526 aaKnown RBP eCLIP10.41□□□□□ -0.74
CPSF1-213ENST00000620219 ZNF73O43830 326 aaPredicted RBP10.41□□□□□ -0.74
CPSF1-213ENST00000620219 Q6ZQY7 126 aa10.4□□□□□ -0.74
CPSF1-213ENST00000620219 C14orf132Q9NPU4 83 aa10.39□□□□□ -0.75
CPSF1-213ENST00000620219 GHRHP01286 108 aa10.39□□□□□ -0.75
CPSF1-213ENST00000620219 INAFM2P0DMQ5 153 aa10.38□□□□□ -0.75
CPSF1-213ENST00000620219 GVQW2A0A096LPI5 108 aaPredicted RBP10.38□□□□□ -0.75
CPSF1-213ENST00000620219 NDUFC2O95298 119 aa10.38□□□□□ -0.75
CPSF1-213ENST00000620219 TRACP01848 142 aa10.38□□□□□ -0.75
CPSF1-213ENST00000620219 C1orf134Q5TEV5 83 aa10.36□□□□□ -0.75
CPSF1-213ENST00000620219 FAM19A1Q7Z5A9 133 aa10.36□□□□□ -0.75
CPSF1-213ENST00000620219 FAM168BA1KXE4 195 aa10.36□□□□□ -0.75
CPSF1-213ENST00000620219 M0QXV9 152 aa10.36□□□□□ -0.75
CPSF1-213ENST00000620219 CHTF8P0CG12 524 aa10.35□□□□□ -0.75
CPSF1-213ENST00000620219 MT-ATP8P03928 68 aa10.34□□□□□ -0.75
CPSF1-213ENST00000620219 UBE2AP49459 152 aa10.34□□□□□ -0.75
CPSF1-213ENST00000620219 Q8NDZ9 215 aa10.34□□□□□ -0.75
CPSF1-213ENST00000620219 WWC2-AS2Q96NR7 200 aa10.34□□□□□ -0.75
CPSF1-213ENST00000620219 DSCR8Q96T75 97 aa10.33□□□□□ -0.76
CPSF1-213ENST00000620219 KRTAP1-5Q9BYS1 174 aa10.33□□□□□ -0.76
CPSF1-213ENST00000620219 UPK3BQ9BT76 320 aa10.33□□□□□ -0.76
CPSF1-213ENST00000620219 F8WEM9 126 aa10.32□□□□□ -0.76
CPSF1-213ENST00000620219 C7orf33Q8WU49 177 aa10.32□□□□□ -0.76
CPSF1-213ENST00000620219 C22orf24Q9Y442 160 aa10.32□□□□□ -0.76
CPSF1-213ENST00000620219 TMEM256-PLSCR3K7ERE1 68 aa10.31□□□□□ -0.76
CPSF1-213ENST00000620219 A0A096LNI7 61 aa10.31□□□□□ -0.76
CPSF1-213ENST00000620219 Q8N814 137 aa10.31□□□□□ -0.76
CPSF1-213ENST00000620219 SERTAD4-AS1Q5TG53 156 aa10.3□□□□□ -0.76
CPSF1-213ENST00000620219 XGP55808 180 aa10.3□□□□□ -0.76
CPSF1-213ENST00000620219 MRPL55Q7Z7F7 128 aaKnown RBP10.29□□□□□ -0.76
CPSF1-213ENST00000620219 PPDPFQ9H3Y8 114 aa10.28□□□□□ -0.76
CPSF1-213ENST00000620219 IGLV5-52A0A0A0MRZ9 124 aa10.28□□□□□ -0.76
CPSF1-213ENST00000620219 LINC00167Q96N53 147 aa10.28□□□□□ -0.76
CPSF1-213ENST00000620219 VPREB1P12018 145 aa10.28□□□□□ -0.76
CPSF1-213ENST00000620219 RBM3P98179 157 aaKnown RBP10.28□□□□□ -0.76
CPSF1-213ENST00000620219 C9orf129Q5T035 196 aaKnown RBP10.27□□□□□ -0.77
CPSF1-213ENST00000620219 PKIGQ9Y2B9 76 aa10.27□□□□□ -0.77
CPSF1-213ENST00000620219 F8WDY8 70 aa10.26□□□□□ -0.77
CPSF1-213ENST00000620219 HIST1H4AP62805 103 aaKnown RBP10.26□□□□□ -0.77
CPSF1-213ENST00000620219 HAMPP81172 84 aa10.26□□□□□ -0.77
CPSF1-213ENST00000620219 KRTAP26-1Q6PEX3 210 aa10.25□□□□□ -0.77
CPSF1-213ENST00000620219 PRLHP81277 87 aa10.25□□□□□ -0.77
CPSF1-213ENST00000620219 LINC00575Q6W349 94 aa10.24□□□□□ -0.77
CPSF1-213ENST00000620219 SCGB1A1P11684 91 aa10.24□□□□□ -0.77
CPSF1-213ENST00000620219 CDIP1Q9H305 208 aa10.24□□□□□ -0.77
CPSF1-213ENST00000620219 JMJD7-PLA2G4BH0Y9G9 81 aa10.23□□□□□ -0.77
CPSF1-213ENST00000620219 PHF5AQ7RTV0 110 aaKnown RBP10.22□□□□□ -0.77
CPSF1-213ENST00000620219 IGKV3D-7A0A0C4DH55 119 aa10.22□□□□□ -0.77
CPSF1-213ENST00000620219 REG3GQ6UW15 175 aa10.21□□□□□ -0.77
CPSF1-213ENST00000620219 LRCOL1A6NCL2 159 aa10.2□□□□□ -0.78
CPSF1-213ENST00000620219 IGLV6-57P01721 117 aa10.2□□□□□ -0.78
CPSF1-213ENST00000620219 UBL5Q9BZL1 73 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms