RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 STHQ8IWL8 128 aa7.5□□□□□ -1.21
UPF3A-212ENST00000619079 TRBV6-8A0A0A6YYG3 113 aa7.5□□□□□ -1.21
UPF3A-212ENST00000619079 HAMPP81172 84 aa7.5□□□□□ -1.21
UPF3A-212ENST00000619079 COX17Q14061 63 aa7.5□□□□□ -1.21
UPF3A-212ENST00000619079 C6orf223Q8N319 242 aa7.5□□□□□ -1.21
UPF3A-212ENST00000619079 IGLV4-60A0A075B6I1 120 aa7.49□□□□□ -1.21
UPF3A-212ENST00000619079 Q6ZVQ6 151 aa7.49□□□□□ -1.21
UPF3A-212ENST00000619079 RMI2Q96E14 147 aa7.49□□□□□ -1.21
UPF3A-212ENST00000619079 SNURFQ9Y675 71 aa7.49□□□□□ -1.21
UPF3A-212ENST00000619079 TRBV7-6A0A0J9YX20 115 aa7.49□□□□□ -1.21
UPF3A-212ENST00000619079 RPL35AP18077 110 aaKnown RBP7.49□□□□□ -1.21
UPF3A-212ENST00000619079 LINC00959A0A1B0GUT2 108 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 KHDC1LQ5JSQ8 128 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 LINC00575Q6W349 94 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 LAMTOR3Q9UHA4 124 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 TRGV2A0A075B6R0 118 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 TRAV10A0A0B4J240 114 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 DEFB114Q30KQ6 69 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 C9orf66Q5T8R8 295 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 MDFIQ99750 246 aa7.48□□□□□ -1.21
UPF3A-212ENST00000619079 COL6A5A8TX70 2615 aa7.47□□□□□ -1.21
UPF3A-212ENST00000619079 C6orf99Q4VX62 202 aa7.47□□□□□ -1.21
UPF3A-212ENST00000619079 C11orf68Q9H3H3 251 aaKnown RBP7.47□□□□□ -1.21
UPF3A-212ENST00000619079 NOP10Q9NPE3 64 aaKnown RBP7.47□□□□□ -1.21
UPF3A-212ENST00000619079 ERC2-IT1O76042 136 aa7.47□□□□□ -1.21
UPF3A-212ENST00000619079 MIFP14174 115 aa7.47□□□□□ -1.21
UPF3A-212ENST00000619079 DEFB136Q30KP8 78 aa7.47□□□□□ -1.21
UPF3A-212ENST00000619079 Q8N3U1 123 aa7.46□□□□□ -1.22
UPF3A-212ENST00000619079 C16orf74Q96GX8 76 aa7.46□□□□□ -1.22
UPF3A-212ENST00000619079 PKIGQ9Y2B9 76 aa7.46□□□□□ -1.22
UPF3A-212ENST00000619079 TRGV4A0A0C4DH28 118 aa7.46□□□□□ -1.22
UPF3A-212ENST00000619079 TRBV7-4A0A0J9YYF1 115 aa7.46□□□□□ -1.22
UPF3A-212ENST00000619079 ODF3L2Q3SX64 289 aa7.46□□□□□ -1.22
UPF3A-212ENST00000619079 C4orf3Q8WVX3 66 aa7.45□□□□□ -1.22
UPF3A-212ENST00000619079 LOC100131303A0A0U1RQF7 123 aa7.44□□□□□ -1.22
UPF3A-212ENST00000619079 PRR3P79522 188 aaKnown RBP7.44□□□□□ -1.22
UPF3A-212ENST00000619079 BRK1Q8WUW1 75 aa7.44□□□□□ -1.22
UPF3A-212ENST00000619079 C18orf65Q6ZTR6 163 aa7.43□□□□□ -1.22
UPF3A-212ENST00000619079 MUC7Q8TAX7 377 aa7.43□□□□□ -1.22
UPF3A-212ENST00000619079 NREPQ16612 68 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 TMEM254Q8TBM7 123 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 KRTAP10-3P60369 221 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 C1orf195Q5TG92 126 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 TM2D3Q9BRN9 247 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 LINC00474Q9P2X8 69 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 V9GYY9 64 aa7.42□□□□□ -1.22
UPF3A-212ENST00000619079 IGHV4-28A0A0C4DH34 117 aa7.41□□□□□ -1.22
UPF3A-212ENST00000619079 A0A1B0GUV1 79 aa7.41□□□□□ -1.22
UPF3A-212ENST00000619079 KRTAP21-3Q3LHN1 58 aa7.41□□□□□ -1.22
UPF3A-212ENST00000619079 TENM1Q9UKZ4 2725 aa7.41□□□□□ -1.22
UPF3A-212ENST00000619079 STAB1Q9NY15 2570 aa7.41□□□□□ -1.22
UPF3A-212ENST00000619079 PLAC8L1A1L4L8 177 aa7.4□□□□□ -1.22
UPF3A-212ENST00000619079 M0R2N4 97 aa7.4□□□□□ -1.23
UPF3A-212ENST00000619079 BPY2O14599 106 aa7.4□□□□□ -1.23
UPF3A-212ENST00000619079 CMC4P56277 68 aaPredicted RBP7.4□□□□□ -1.23
UPF3A-212ENST00000619079 OXLD1Q5BKU9 147 aa7.39□□□□□ -1.23
UPF3A-212ENST00000619079 Q6ZQY7 126 aa7.39□□□□□ -1.23
UPF3A-212ENST00000619079 KIAA0087Q14695 138 aa7.38□□□□□ -1.23
UPF3A-212ENST00000619079 SPATA3Q8NHX4 192 aa7.38□□□□□ -1.23
UPF3A-212ENST00000619079 CD164L2Q6UWJ8 174 aa7.38□□□□□ -1.23
UPF3A-212ENST00000619079 ESRGQ1W209 222 aa7.37□□□□□ -1.23
UPF3A-212ENST00000619079 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.37□□□□□ -1.23
UPF3A-212ENST00000619079 CCL24O00175 119 aa7.37□□□□□ -1.23
UPF3A-212ENST00000619079 PRYO14603 147 aa7.37□□□□□ -1.23
UPF3A-212ENST00000619079 IGLV6-57P01721 117 aa7.37□□□□□ -1.23
UPF3A-212ENST00000619079 DNHD1Q96M86 4753 aa7.36□□□□□ -1.23
UPF3A-212ENST00000619079 TRRAPQ9Y4A5 3859 aa7.36□□□□□ -1.23
UPF3A-212ENST00000619079 ANK2Q01484 3957 aa7.36□□□□□ -1.23
UPF3A-212ENST00000619079 FUSP35637 526 aaKnown RBP eCLIP7.36□□□□□ -1.23
UPF3A-212ENST00000619079 A0A0U1RQV1 116 aa7.35□□□□□ -1.23
UPF3A-212ENST00000619079 SEC61GP60059 68 aa7.35□□□□□ -1.23
UPF3A-212ENST00000619079 GIG44P09565 113 aaPredicted RBP7.34□□□□□ -1.23
UPF3A-212ENST00000619079 COX7BP24311 80 aa7.34□□□□□ -1.23
UPF3A-212ENST00000619079 SCXQ7RTU7 201 aa7.34□□□□□ -1.23
UPF3A-212ENST00000619079 MPLKIPQ8TAP9 179 aa7.34□□□□□ -1.23
UPF3A-212ENST00000619079 DIRC1Q969H9 104 aa7.34□□□□□ -1.23
UPF3A-212ENST00000619079 WNK1Q9H4A3 2382 aa7.34□□□□□ -1.24
UPF3A-212ENST00000619079 Q8NDZ9 215 aa7.33□□□□□ -1.24
UPF3A-212ENST00000619079 CLPSL2Q6UWE3 100 aa7.33□□□□□ -1.24
UPF3A-212ENST00000619079 LINC00269Q8N2A0 174 aa7.33□□□□□ -1.24
UPF3A-212ENST00000619079 C9orf116Q5BN46 136 aaPredicted RBP7.32□□□□□ -1.24
UPF3A-212ENST00000619079 CHCHD10Q8WYQ3 142 aaPredicted RBP7.32□□□□□ -1.24
UPF3A-212ENST00000619079 OCR1Q9BZK8 76 aa7.32□□□□□ -1.24
UPF3A-212ENST00000619079 GYPEP15421 78 aa7.32□□□□□ -1.24
UPF3A-212ENST00000619079 FAM229BQ4G0N7 80 aa7.32□□□□□ -1.24
UPF3A-212ENST00000619079 CSNK1G2-AS1Q8NCQ2 148 aa7.31□□□□□ -1.24
UPF3A-212ENST00000619079 A0A0J9YWU9 116 aa7.3□□□□□ -1.24
UPF3A-212ENST00000619079 IGHV4-30-4P0DP06 118 aa7.3□□□□□ -1.24
UPF3A-212ENST00000619079 IGKV4-1P06312 121 aa7.3□□□□□ -1.24
UPF3A-212ENST00000619079 Q6ZTC4 211 aa7.3□□□□□ -1.24
UPF3A-212ENST00000619079 ZNF73O43830 326 aaPredicted RBP7.29□□□□□ -1.24
UPF3A-212ENST00000619079 REG3AQ06141 175 aa7.29□□□□□ -1.24
UPF3A-212ENST00000619079 PRR15Q8IV56 129 aa7.29□□□□□ -1.24
UPF3A-212ENST00000619079 VWFP04275 2813 aa7.28□□□□□ -1.24
UPF3A-212ENST00000619079 ELOF1P60002 83 aaKnown RBP7.28□□□□□ -1.24
UPF3A-212ENST00000619079 SPAG11BQ08648 103 aa7.28□□□□□ -1.24
UPF3A-212ENST00000619079 NOTCH3Q9UM47 2321 aa7.28□□□□□ -1.24
UPF3A-212ENST00000619079 DEFB130BP0DP73 79 aa7.28□□□□□ -1.24
UPF3A-212ENST00000619079 DEFB130AP0DP74 79 aa7.28□□□□□ -1.24
UPF3A-212ENST00000619079 LINC00612Q8N6U2 182 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms