RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 IGKV2D-28P01615 120 aa9.23□□□□□ -0.93
USP39-220ENST00000613444 A0A087WTM6 91 aa9.23□□□□□ -0.93
USP39-220ENST00000613444 PRO1854Q9UHT4 67 aa9.23□□□□□ -0.93
USP39-220ENST00000613444 FAT2Q9NYQ8 4349 aa9.22□□□□□ -0.93
USP39-220ENST00000613444 XAGE1AQ9HD64 81 aa9.22□□□□□ -0.93
USP39-220ENST00000613444 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.22□□□□□ -0.93
USP39-220ENST00000613444 Q8N814 137 aa9.22□□□□□ -0.93
USP39-220ENST00000613444 DNAH11Q96DT5 4516 aa9.21□□□□□ -0.94
USP39-220ENST00000613444 C9orf118A6NHY6 69 aa9.21□□□□□ -0.94
USP39-220ENST00000613444 A0A1B0GV90 55 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 NDUFC2O95298 119 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 LINC00337Q8N6G1 96 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 NAA38Q9BRA0 125 aaKnown RBP9.2□□□□□ -0.94
USP39-220ENST00000613444 TSPAN13O95857 204 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 GAGE2EQ4V326 116 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 C9orf129Q5T035 196 aaKnown RBP9.2□□□□□ -0.94
USP39-220ENST00000613444 PGPEP1Q9NXJ5 209 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 GAGE2DQ9UEU5 116 aa9.2□□□□□ -0.94
USP39-220ENST00000613444 PRR3P79522 188 aaKnown RBP9.19□□□□□ -0.94
USP39-220ENST00000613444 RTL8CO15255 209 aa9.19□□□□□ -0.94
USP39-220ENST00000613444 LCE6AA0A183 80 aa9.18□□□□□ -0.94
USP39-220ENST00000613444 H3BUT2 72 aa9.18□□□□□ -0.94
USP39-220ENST00000613444 RPL18AQ02543 176 aaKnown RBP9.18□□□□□ -0.94
USP39-220ENST00000613444 KMT2CQ8NEZ4 4911 aaKnown RBP9.18□□□□□ -0.94
USP39-220ENST00000613444 LOC107984640A0A0U1RRK4 108 aa9.17□□□□□ -0.94
USP39-220ENST00000613444 C9orf163Q8N9P6 203 aa9.17□□□□□ -0.94
USP39-220ENST00000613444 RPL13AP40429 203 aaKnown RBP9.16□□□□□ -0.94
USP39-220ENST00000613444 TNP2Q05952 138 aa9.16□□□□□ -0.94
USP39-220ENST00000613444 RYR2Q92736 4967 aa9.16□□□□□ -0.94
USP39-220ENST00000613444 TRAV13-2A0A0B4J235 113 aa9.16□□□□□ -0.94
USP39-220ENST00000613444 VPREB1P12018 145 aa9.16□□□□□ -0.94
USP39-220ENST00000613444 H7C2G1 150 aa9.15□□□□□ -0.94
USP39-220ENST00000613444 PKD1P98161 4303 aa9.15□□□□□ -0.95
USP39-220ENST00000613444 DNAH5Q8TE73 4624 aa9.15□□□□□ -0.95
USP39-220ENST00000613444 A0A1W2PPM0 123 aa9.14□□□□□ -0.95
USP39-220ENST00000613444 GAGE2BQ13066 116 aa9.14□□□□□ -0.95
USP39-220ENST00000613444 A0A096LNI7 61 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 NCR3O14931 201 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 LINC01620Q4KN68 170 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 KRTAP7-1Q8IUC3 87 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 C16orf90A8MZG2 172 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 SERTAD4-AS1Q5TG53 156 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 SDIM1Q6ZPB5 146 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 PLA2G2DQ9UNK4 145 aa9.13□□□□□ -0.95
USP39-220ENST00000613444 TRBV10-2A0A0K0K1G8 114 aa9.12□□□□□ -0.95
USP39-220ENST00000613444 FUSP35637 526 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP39-220ENST00000613444 FAM168BA1KXE4 195 aa9.12□□□□□ -0.95
USP39-220ENST00000613444 TRIAP1O43715 76 aa9.1□□□□□ -0.95
USP39-220ENST00000613444 Q1RN00 199 aa9.1□□□□□ -0.95
USP39-220ENST00000613444 IGLV6-57P01721 117 aa9.1□□□□□ -0.95
USP39-220ENST00000613444 FABP2P12104 132 aa9.09□□□□□ -0.95
USP39-220ENST00000613444 OR13C6PQ8NH95 151 aa9.09□□□□□ -0.95
USP39-220ENST00000613444 SMIM11BQ8TCY0 68 aa9.09□□□□□ -0.95
USP39-220ENST00000613444 TMEM126AQ9H061 195 aa9.09□□□□□ -0.95
USP39-220ENST00000613444 IGLV5-37A0A075B6J1 123 aa9.09□□□□□ -0.95
USP39-220ENST00000613444 CHTF8P0CG12 524 aa9.09□□□□□ -0.95
USP39-220ENST00000613444 RPL28P46779 137 aaKnown RBP9.09□□□□□ -0.95
USP39-220ENST00000613444 IGKV2-24A0A0C4DH68 120 aa9.08□□□□□ -0.96
USP39-220ENST00000613444 VAMP3Q15836 100 aa9.08□□□□□ -0.96
USP39-220ENST00000613444 M0R378 163 aa9.07□□□□□ -0.96
USP39-220ENST00000613444 PSMB2P49721 201 aa9.07□□□□□ -0.96
USP39-220ENST00000613444 TRBV10-3A0A0K0K1G6 114 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 PANO1I0J062 215 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 S100A7L2Q5SY68 101 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 A0A1W2PNN7 141 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 KRTAP10-2P60368 255 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 PKIGQ9Y2B9 76 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 SPCS1Q9Y6A9 102 aa9.06□□□□□ -0.96
USP39-220ENST00000613444 IGLV5-52A0A0A0MRZ9 124 aa9.05□□□□□ -0.96
USP39-220ENST00000613444 K7EP34 96 aa9.05□□□□□ -0.96
USP39-220ENST00000613444 C7orf33Q8WU49 177 aa9.05□□□□□ -0.96
USP39-220ENST00000613444 DNAH8Q96JB1 4490 aa9.05□□□□□ -0.96
USP39-220ENST00000613444 FAM19A5Q7Z5A7 132 aaPredicted RBP9.05□□□□□ -0.96
USP39-220ENST00000613444 C22orf24Q9Y442 160 aa9.05□□□□□ -0.96
USP39-220ENST00000613444 NKAPP1Q8N9T2 125 aa9.04□□□□□ -0.96
USP39-220ENST00000613444 TCL1BO95988 128 aa9.03□□□□□ -0.96
USP39-220ENST00000613444 SCGB1C2P0DMR2 95 aa9.03□□□□□ -0.96
USP39-220ENST00000613444 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.03□□□□□ -0.96
USP39-220ENST00000613444 GAGE10A6NGK3 116 aa9.03□□□□□ -0.96
USP39-220ENST00000613444 UBE2V1Q13404 147 aa9.02□□□□□ -0.97
USP39-220ENST00000613444 LYRM7Q5U5X0 104 aa9.02□□□□□ -0.97
USP39-220ENST00000613444 SPACA4Q8TDM5 124 aa9.02□□□□□ -0.97
USP39-220ENST00000613444 LINC00474Q9P2X8 69 aa9.02□□□□□ -0.97
USP39-220ENST00000613444 PKHD1P08F94 4074 aa9.02□□□□□ -0.97
USP39-220ENST00000613444 COX6CP09669 75 aa9.02□□□□□ -0.97
USP39-220ENST00000613444 EPM2AB3EWF7 344 aa9.01□□□□□ -0.97
USP39-220ENST00000613444 MRPL55Q7Z7F7 128 aaKnown RBP9.01□□□□□ -0.97
USP39-220ENST00000613444 CLEC2BQ92478 149 aa9.01□□□□□ -0.97
USP39-220ENST00000613444 LINC00167Q96N53 147 aa9.01□□□□□ -0.97
USP39-220ENST00000613444 TRBV20-1A0A075B6N2 111 aa9□□□□□ -0.97
USP39-220ENST00000613444 TRAV23DV6A0A075B6W5 121 aa9□□□□□ -0.97
USP39-220ENST00000613444 GTF2H5Q6ZYL4 71 aa9□□□□□ -0.97
USP39-220ENST00000613444 IGLV1-50A0A075B6I6 118 aa9□□□□□ -0.97
USP39-220ENST00000613444 C6orf99Q4VX62 202 aa9□□□□□ -0.97
USP39-220ENST00000613444 H3BMG7 143 aa8.99□□□□□ -0.97
USP39-220ENST00000613444 M0QXV9 152 aa8.99□□□□□ -0.97
USP39-220ENST00000613444 FAM218AQ96MZ4 157 aa8.99□□□□□ -0.97
USP39-220ENST00000613444 KCNQ1DNQ9H478 68 aa8.99□□□□□ -0.97
USP39-220ENST00000613444 RYR3Q15413 4870 aa8.99□□□□□ -0.97
USP39-220ENST00000613444 RPL37AP8A6NKH3 93 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 197.2 ms