RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 Q75L30 129 aa3.51□□□□□ -1.85
VPS13D-213ENST00000613099 PHF5AQ7RTV0 110 aaKnown RBP3.51□□□□□ -1.85
VPS13D-213ENST00000613099 KIF25-AS1Q9Y6Z4 181 aa3.5□□□□□ -1.85
VPS13D-213ENST00000613099 LINC00959A0A1B0GUT2 108 aa3.5□□□□□ -1.85
VPS13D-213ENST00000613099 C19orf84I3L1E1 186 aa3.5□□□□□ -1.85
VPS13D-213ENST00000613099 NUPR2A6NF83 97 aa3.5□□□□□ -1.85
VPS13D-213ENST00000613099 Q6ZTC4 211 aa3.5□□□□□ -1.85
VPS13D-213ENST00000613099 K7EQG2 157 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-213ENST00000613099 PRO0255Q9UI72 69 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 ODF3BA8MYP8 253 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 AVPP01185 164 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 SMIM29Q86T20 159 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 COA5Q86WW8 74 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 EIF4EBP3O60516 100 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-213ENST00000613099 TRBV7-4A0A0J9YYF1 115 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 FLNAP21333 2647 aaKnown RBP3.49□□□□□ -1.85
VPS13D-213ENST00000613099 IGHV4-38-2P0DP08 117 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 PROK1P58294 105 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 BBC3Q96PG8 261 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-213ENST00000613099 FAM215AQ9Y5M1 114 aa3.49□□□□□ -1.85
VPS13D-213ENST00000613099 UQCR11O14957 56 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 ASB16-AS1Q495Z4 193 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 A0A096LPF7 62 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 LINC00315P59091 139 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 IGKV2D-24A0A075B6R9 120 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 AKAP13Q12802 2813 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 LOC100131303A0A0U1RQF7 123 aa3.48□□□□□ -1.85
VPS13D-213ENST00000613099 BRD3OSQ6XYD6 125 aa3.47□□□□□ -1.85
VPS13D-213ENST00000613099 ZFP36P26651 326 aaKnown RBP3.47□□□□□ -1.85
VPS13D-213ENST00000613099 EGFEM1PQ0D2K5 195 aa3.47□□□□□ -1.85
VPS13D-213ENST00000613099 ITPR3Q14573 2671 aa3.47□□□□□ -1.85
VPS13D-213ENST00000613099 C16orf95Q9H693 158 aa3.47□□□□□ -1.85
VPS13D-213ENST00000613099 KLK12Q9UKR0 248 aa3.47□□□□□ -1.85
VPS13D-213ENST00000613099 LY6G6DO95868 133 aa3.46□□□□□ -1.85
VPS13D-213ENST00000613099 TRANK1O15050 2925 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 PCOTHQ58A44 107 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 SPINT4Q6UDR6 99 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 LINC01006Q8NI28 216 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 CYSRT1A8MQ03 144 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 OXTP01178 125 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 IGKV2-28A0A075B6P5 120 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 IGKV2D-28P01615 120 aa3.46□□□□□ -1.86
VPS13D-213ENST00000613099 C6orf48Q9UBA6 75 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 MIR22HGQ0VDD5 57 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 LINC00167Q96N53 147 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 OCR1Q9BZK8 76 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 LY6G6EA0A0G2JKS1 128 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 U3KQA8 63 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 NIPBLQ6KC79 2804 aaeCLIP3.45□□□□□ -1.864e-6■■□□□ 13.9
VPS13D-213ENST00000613099 IGHV4-30-4P0DP06 118 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 IGHV4-31P0DP07 118 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 Q8NA96 180 aa3.45□□□□□ -1.86
VPS13D-213ENST00000613099 IGHV3OR16-9A0A0B4J2B5 98 aa3.44□□□□□ -1.86
VPS13D-213ENST00000613099 UNQ6190/PRO20217Q6UXQ8 127 aa3.44□□□□□ -1.86
VPS13D-213ENST00000613099 Q9BRP9 147 aa3.44□□□□□ -1.86
VPS13D-213ENST00000613099 MSMPQ1L6U9 139 aa3.44□□□□□ -1.86
VPS13D-213ENST00000613099 Q8NBF4 154 aa3.44□□□□□ -1.86
VPS13D-213ENST00000613099 CYSTM1Q9H1C7 97 aa3.44□□□□□ -1.86
VPS13D-213ENST00000613099 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.44□□□□□ -1.86
VPS13D-213ENST00000613099 LINC00313P59037 77 aa3.43□□□□□ -1.86
VPS13D-213ENST00000613099 C11orf45Q8TAV5 145 aa3.43□□□□□ -1.86
VPS13D-213ENST00000613099 Q6ZRP5 223 aa3.43□□□□□ -1.86
VPS13D-213ENST00000613099 IGLV6-57P01721 117 aa3.43□□□□□ -1.86
VPS13D-213ENST00000613099 IGHV4-61A0A0C4DH41 118 aa3.43□□□□□ -1.86
VPS13D-213ENST00000613099 A8MTW9 85 aa3.43□□□□□ -1.86
VPS13D-213ENST00000613099 SSBP3-AS1Q7Z2R9 100 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 KIAA0087Q14695 138 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 EPM2AB3EWF7 344 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 Q6ZSN1 163 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 UTP20O75691 2785 aaKnown RBP3.42□□□□□ -1.86
VPS13D-213ENST00000613099 MAP6D1Q9H9H5 199 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 DMBT1Q9UGM3 2413 aaPredicted RBP3.42□□□□□ -1.86
VPS13D-213ENST00000613099 A6NDX4 124 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 SLURP1P55000 103 aa3.42□□□□□ -1.86
VPS13D-213ENST00000613099 DEFB136Q30KP8 78 aa3.41□□□□□ -1.86
VPS13D-213ENST00000613099 DEFB116Q30KQ4 102 aa3.41□□□□□ -1.86
VPS13D-213ENST00000613099 F8W735 103 aaPredicted RBP3.41□□□□□ -1.86
VPS13D-213ENST00000613099 LELP1Q5T871 98 aa3.41□□□□□ -1.86
VPS13D-213ENST00000613099 A0A087WSZ3 146 aa3.41□□□□□ -1.86
VPS13D-213ENST00000613099 Q5VV11 94 aa3.41□□□□□ -1.86
VPS13D-213ENST00000613099 Q8N9P0 234 aaPredicted RBP3.4□□□□□ -1.86
VPS13D-213ENST00000613099 UBE2DNLQ8IWF7 75 aa3.4□□□□□ -1.86
VPS13D-213ENST00000613099 MAPK1IP1LQ8NDC0 245 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 C1orf134Q5TEV5 83 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 C16orf90A8MZG2 172 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 IGHV6-1A0A0B4J1U7 121 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 Q6YL49 198 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 REG3GQ6UW15 175 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 TNP2Q05952 138 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 C11orf71Q6IPW1 123 aa3.4□□□□□ -1.87
VPS13D-213ENST00000613099 RNF223E7ERA6 249 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 ZNF702PQ9H963 129 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 C7orf33Q8WU49 177 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 STAB2Q8WWQ8 2551 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 LINC01558Q9Y6Z2 57 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 FAM229BQ4G0N7 80 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 KRTAP16-1A8MUX0 517 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 A8MWP4 228 aa3.39□□□□□ -1.87
VPS13D-213ENST00000613099 A0A087X002 238 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms