RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 TMEM170BQ5T4T1 132 aa9.05□□□□□ -0.96
SHKBP1-228ENST00000602239 BAGE3Q86Y29 109 aa9.05□□□□□ -0.96
SHKBP1-228ENST00000602239 CBLN2Q8IUK8 224 aa9.05□□□□□ -0.96
SHKBP1-228ENST00000602239 KRTAP9-2Q9BYQ4 174 aa9.05□□□□□ -0.96
SHKBP1-228ENST00000602239 HBDP02042 147 aa9.04□□□□□ -0.96
SHKBP1-228ENST00000602239 TPRXLQ17RH7 258 aa9.04□□□□□ -0.96
SHKBP1-228ENST00000602239 COMMD7Q86VX2 200 aa9.04□□□□□ -0.96
SHKBP1-228ENST00000602239 CDIP1Q9H305 208 aa9.04□□□□□ -0.96
SHKBP1-228ENST00000602239 TRAPPC1Q9Y5R8 145 aa9.04□□□□□ -0.96
SHKBP1-228ENST00000602239 HIGD2AQ9BW72 106 aa9.03□□□□□ -0.96
SHKBP1-228ENST00000602239 A0A0U1RRA0 63 aa9.02□□□□□ -0.97
SHKBP1-228ENST00000602239 LINC00158P58513 81 aa9.02□□□□□ -0.97
SHKBP1-228ENST00000602239 RHEBQ15382 184 aa9.02□□□□□ -0.97
SHKBP1-228ENST00000602239 FAT4Q6V0I7 4981 aa9.01□□□□□ -0.97
SHKBP1-228ENST00000602239 CTAG1AP78358 180 aa9□□□□□ -0.97
SHKBP1-228ENST00000602239 SPRR4Q96PI1 79 aa8.99□□□□□ -0.97
SHKBP1-228ENST00000602239 PPDPFQ9H3Y8 114 aa8.99□□□□□ -0.97
SHKBP1-228ENST00000602239 CHTOPQ9Y3Y2 248 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-228ENST00000602239 TMEM223A0PJW6 202 aa8.98□□□□□ -0.97
SHKBP1-228ENST00000602239 SFTA2Q6UW10 78 aa8.98□□□□□ -0.97
SHKBP1-228ENST00000602239 MUC17Q685J3 4493 aa8.96□□□□□ -0.97
SHKBP1-228ENST00000602239 SMIM13P0DJ93 91 aa8.96□□□□□ -0.98
SHKBP1-228ENST00000602239 SPAG11AQ6PDA7 123 aa8.95□□□□□ -0.98
SHKBP1-228ENST00000602239 DAND5Q8N907 189 aa8.95□□□□□ -0.98
SHKBP1-228ENST00000602239 BOD1L2Q8IYS8 172 aa8.94□□□□□ -0.98
SHKBP1-228ENST00000602239 NCR3O14931 201 aa8.93□□□□□ -0.98
SHKBP1-228ENST00000602239 SMCR5Q8TEV8 140 aa8.93□□□□□ -0.98
SHKBP1-228ENST00000602239 IFI27L1Q96BM0 104 aa8.93□□□□□ -0.98
SHKBP1-228ENST00000602239 TRAV12-1A0A0B4J245 112 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 KRTAP4-16G5E9R7 235 aaPredicted RBP8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 PRYO14603 147 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 ATP6V1G1O75348 118 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 SPRR1AP35321 89 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 MIR7-3HGQ8N6C7 128 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 Q8NBF4 154 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 KCNQ1DNQ9H478 68 aa8.92□□□□□ -0.98
SHKBP1-228ENST00000602239 APOC3P02656 99 aa8.91□□□□□ -0.98
SHKBP1-228ENST00000602239 C4orf48Q5BLP8 95 aa8.91□□□□□ -0.98
SHKBP1-228ENST00000602239 MEIG1Q5JSS6 88 aa8.91□□□□□ -0.98
SHKBP1-228ENST00000602239 ZNF706Q9Y5V0 76 aaPredicted RBP8.91□□□□□ -0.98
SHKBP1-228ENST00000602239 LINC00337Q8N6G1 96 aa8.9□□□□□ -0.98
SHKBP1-228ENST00000602239 TRBV10-3A0A0K0K1G6 114 aa8.89□□□□□ -0.99
SHKBP1-228ENST00000602239 KRTAP13-3Q3SY46 172 aa8.89□□□□□ -0.99
SHKBP1-228ENST00000602239 FP248Q71RG6 208 aaPredicted RBP8.89□□□□□ -0.99
SHKBP1-228ENST00000602239 CHCHD1Q96BP2 118 aaKnown RBP8.89□□□□□ -0.99
SHKBP1-228ENST00000602239 ETDCA0A1B0GVM5 59 aa8.88□□□□□ -0.99
SHKBP1-228ENST00000602239 HERV-K104P63124 156 aa8.88□□□□□ -0.99
SHKBP1-228ENST00000602239 FAM19A2Q8N3H0 131 aa8.88□□□□□ -0.99
SHKBP1-228ENST00000602239 YPEL4Q96NS1 127 aa8.88□□□□□ -0.99
SHKBP1-228ENST00000602239 NDUFA12Q9UI09 145 aa8.88□□□□□ -0.99
SHKBP1-228ENST00000602239 ERC2-IT1O76042 136 aa8.86□□□□□ -0.99
SHKBP1-228ENST00000602239 LINC00483Q53H64 154 aa8.86□□□□□ -0.99
SHKBP1-228ENST00000602239 GAGE2AQ6NT46 116 aa8.86□□□□□ -0.99
SHKBP1-228ENST00000602239 B5MCH6 92 aa8.85□□□□□ -0.99
SHKBP1-228ENST00000602239 SNAPINO95295 136 aa8.85□□□□□ -0.99
SHKBP1-228ENST00000602239 SPINK1P00995 79 aa8.85□□□□□ -0.99
SHKBP1-228ENST00000602239 TSPEAR-AS2P59090 65 aa8.85□□□□□ -0.99
SHKBP1-228ENST00000602239 KRTAP4-1Q9BYQ7 146 aa8.85□□□□□ -0.99
SHKBP1-228ENST00000602239 MYMXA0A1B0GTQ4 84 aa8.84□□□□□ -0.99
SHKBP1-228ENST00000602239 SVBPQ8N300 66 aa8.84□□□□□ -0.99
SHKBP1-228ENST00000602239 LINC00587B1AMM8 73 aa8.83□□□□□ -1
SHKBP1-228ENST00000602239 H0Y8G0 127 aa8.83□□□□□ -1
SHKBP1-228ENST00000602239 ASB16-AS1Q495Z4 193 aa8.83□□□□□ -1
SHKBP1-228ENST00000602239 IGLV9-49A0A0B4J1Y8 123 aa8.82□□□□□ -1
SHKBP1-228ENST00000602239 MOBPQ13875 183 aa8.82□□□□□ -1
SHKBP1-228ENST00000602239 Q9BRP9 147 aa8.82□□□□□ -1
SHKBP1-228ENST00000602239 LOC107984156A0A0G2JMH3 177 aa8.81□□□□□ -1
SHKBP1-228ENST00000602239 HSBP1O75506 76 aa8.81□□□□□ -1
SHKBP1-228ENST00000602239 DDTP30046 118 aa8.81□□□□□ -1
SHKBP1-228ENST00000602239 ARL17AQ8IVW1 177 aa8.81□□□□□ -1
SHKBP1-228ENST00000602239 MAP1LC3CQ9BXW4 147 aa8.81□□□□□ -1
SHKBP1-228ENST00000602239 KRTAP9-6A0A140TA67 174 aa8.8□□□□□ -1
SHKBP1-228ENST00000602239 LEPROTO15243 131 aa8.8□□□□□ -1
SHKBP1-228ENST00000602239 NDUFA5Q16718 116 aa8.8□□□□□ -1
SHKBP1-228ENST00000602239 Q8N377 158 aa8.8□□□□□ -1
SHKBP1-228ENST00000602239 SSBP3-AS1Q7Z2R9 100 aa8.79□□□□□ -1
SHKBP1-228ENST00000602239 TRBV10-2A0A0K0K1G8 114 aa8.78□□□□□ -1
SHKBP1-228ENST00000602239 LINC00310P59036 64 aa8.78□□□□□ -1
SHKBP1-228ENST00000602239 S100A12P80511 92 aa8.78□□□□□ -1
SHKBP1-228ENST00000602239 J3QQQ9 107 aa8.77□□□□□ -1.01
SHKBP1-228ENST00000602239 Q6ZRX8 168 aa8.77□□□□□ -1.01
SHKBP1-228ENST00000602239 EIF4EBP3O60516 100 aaPredicted RBP8.76□□□□□ -1.01
SHKBP1-228ENST00000602239 LEPROTL1O95214 131 aa8.76□□□□□ -1.01
SHKBP1-228ENST00000602239 TRGC2P03986 189 aa8.76□□□□□ -1.01
SHKBP1-228ENST00000602239 PMCHL2Q9BQD1 86 aa8.76□□□□□ -1.01
SHKBP1-228ENST00000602239 SERF1AO75920 110 aa8.75□□□□□ -1.01
SHKBP1-228ENST00000602239 IGLV6-57P01721 117 aa8.75□□□□□ -1.01
SHKBP1-228ENST00000602239 FABP4P15090 132 aa8.74□□□□□ -1.01
SHKBP1-228ENST00000602239 SEC61BP60468 96 aaKnown RBP8.74□□□□□ -1.01
SHKBP1-228ENST00000602239 RPS29P62273 56 aaKnown RBP8.74□□□□□ -1.01
SHKBP1-228ENST00000602239 SOSTDC1Q6X4U4 206 aa8.74□□□□□ -1.01
SHKBP1-228ENST00000602239 SPANXB1Q9NS25 103 aaPredicted RBP8.74□□□□□ -1.01
SHKBP1-228ENST00000602239 SLC25A20O43772 301 aa8.73□□□□□ -1.01
SHKBP1-228ENST00000602239 PLNP26678 52 aa8.73□□□□□ -1.01
SHKBP1-228ENST00000602239 S100A7L2Q5SY68 101 aa8.73□□□□□ -1.01
SHKBP1-228ENST00000602239 ADAMTSL4-AS1Q5T5F5 129 aa8.73□□□□□ -1.01
SHKBP1-228ENST00000602239 DPM2O94777 84 aa8.72□□□□□ -1.01
SHKBP1-228ENST00000602239 NDUFC2O95298 119 aa8.72□□□□□ -1.01
SHKBP1-228ENST00000602239 LINC01547P58512 204 aaPredicted RBP8.72□□□□□ -1.01
SHKBP1-228ENST00000602239 NPC2P61916 151 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms