RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 Q6ZSA8 131 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 TTTY13Q9BZ97 58 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 PPDPFQ9H3Y8 114 aa5.66□□□□□ -1.5
TRIM28-214ENST00000600840 GVQW2A0A096LPI5 108 aaPredicted RBP5.65□□□□□ -1.5
TRIM28-214ENST00000600840 IGHV1-58A0A0C4DH39 117 aa5.65□□□□□ -1.5
TRIM28-214ENST00000600840 A0A0J9YXY3 114 aa5.65□□□□□ -1.5
TRIM28-214ENST00000600840 COX7A2LO14548 114 aa5.65□□□□□ -1.5
TRIM28-214ENST00000600840 OCIAD2Q56VL3 154 aa5.65□□□□□ -1.5
TRIM28-214ENST00000600840 GEMIN7Q9H840 131 aaKnown RBP5.65□□□□□ -1.5
TRIM28-214ENST00000600840 A0A0B4J2C4 111 aa5.64□□□□□ -1.51
TRIM28-214ENST00000600840 IGLV5-39A0A0G2JS06 123 aa5.64□□□□□ -1.51
TRIM28-214ENST00000600840 SMIM1B2RUZ4 78 aa5.64□□□□□ -1.51
TRIM28-214ENST00000600840 IFITM1P13164 125 aa5.64□□□□□ -1.51
TRIM28-214ENST00000600840 SPANXDQ9BXN6 97 aa5.64□□□□□ -1.51
TRIM28-214ENST00000600840 SPANXCQ9NY87 97 aa5.64□□□□□ -1.51
TRIM28-214ENST00000600840 CIRBPQ14011 172 aaKnown RBP5.63□□□□□ -1.51
TRIM28-214ENST00000600840 SFTA2Q6UW10 78 aa5.63□□□□□ -1.51
TRIM28-214ENST00000600840 LRP1Q07954 4544 aaKnown RBP5.63□□□□□ -1.51
TRIM28-214ENST00000600840 KRTAP10-4P60372 401 aaPredicted RBP5.62□□□□□ -1.51
TRIM28-214ENST00000600840 CNBPP62633 177 aaKnown RBP5.62□□□□□ -1.51
TRIM28-214ENST00000600840 CFAP161Q6P656 301 aa5.62□□□□□ -1.51
TRIM28-214ENST00000600840 SCXQ7RTU7 201 aa5.62□□□□□ -1.51
TRIM28-214ENST00000600840 LINC00528Q8N1L1 170 aa5.62□□□□□ -1.51
TRIM28-214ENST00000600840 LINC00526Q96FQ7 95 aa5.62□□□□□ -1.51
TRIM28-214ENST00000600840 PRO1854Q9UHT4 67 aa5.62□□□□□ -1.51
TRIM28-214ENST00000600840 K7ERJ3 54 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 M0QXV9 152 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 PLA2G1BP04054 148 aaKnown RBP5.61□□□□□ -1.51
TRIM28-214ENST00000600840 TSPEAR-AS2P59090 65 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 HERV-K104P63124 156 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 HIGD2BQ4VC39 106 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 C14orf177Q52M58 125 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 C9orf163Q8N9P6 203 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 C2orf48Q96LS8 159 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 NDUFA12Q9UI09 145 aa5.61□□□□□ -1.51
TRIM28-214ENST00000600840 NDUFA1O15239 70 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 APOMO95445 188 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 SPINK8P0C7L1 97 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 MALP21145 153 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 C10orf25Q5T742 122 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 SDIM1Q6ZPB5 146 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 Q8IZM0 81 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 CIRBP-AS1Q8TBR5 109 aa5.6□□□□□ -1.51
TRIM28-214ENST00000600840 F8WDY8 70 aa5.59□□□□□ -1.51
TRIM28-214ENST00000600840 TSPAN13O95857 204 aa5.59□□□□□ -1.51
TRIM28-214ENST00000600840 SPAG11BQ08648 103 aa5.59□□□□□ -1.51
TRIM28-214ENST00000600840 UNQ6190/PRO20217Q6UXQ8 127 aa5.59□□□□□ -1.51
TRIM28-214ENST00000600840 VPS25Q9BRG1 176 aa5.59□□□□□ -1.51
TRIM28-214ENST00000600840 ERG28Q9UKR5 140 aa5.59□□□□□ -1.51
TRIM28-214ENST00000600840 H3BMG7 143 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 COX6CP09669 75 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 CFC1BP0CG36 223 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 CFC1P0CG37 223 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 RNF151Q2KHN1 245 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 C2orf82Q6UX34 121 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 Q6ZRU5 148 aa5.58□□□□□ -1.52
TRIM28-214ENST00000600840 FAT3Q8TDW7 4589 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 LOC107984156A0A0G2JMH3 177 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 TRBV30A0A0K0K1B3 111 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 A4D1N5 150 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 PANO1I0J062 215 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 ZNF561-AS1K7EIQ3 104 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 SYCNQ0VAF6 134 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 ARL17AQ8IVW1 177 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 COX7B2Q8TF08 81 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 ZNF625Q96I27 306 aaPredicted RBP5.57□□□□□ -1.52
TRIM28-214ENST00000600840 NAA38Q9BRA0 125 aaKnown RBP5.57□□□□□ -1.52
TRIM28-214ENST00000600840 C6orf48Q9UBA6 75 aa5.57□□□□□ -1.52
TRIM28-214ENST00000600840 OXTP01178 125 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 SCGB1C2P0DMR2 95 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 C6orf226Q5I0X4 101 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 MUSTN1Q8IVN3 82 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 LINC01600Q96MT4 127 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 CAMK2N2Q96S95 79 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 LITAFQ99732 161 aa5.56□□□□□ -1.52
TRIM28-214ENST00000600840 TLX1NBP0CAT3 122 aa5.55□□□□□ -1.52
TRIM28-214ENST00000600840 PSMB2P49721 201 aa5.55□□□□□ -1.52
TRIM28-214ENST00000600840 ATXN8Q156A1 80 aa5.55□□□□□ -1.52
TRIM28-214ENST00000600840 TOMM7Q9P0U1 55 aa5.55□□□□□ -1.52
TRIM28-214ENST00000600840 PRO0461Q9UI25 63 aa5.55□□□□□ -1.52
TRIM28-214ENST00000600840 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.55□□□□□ -1.52
TRIM28-214ENST00000600840 RNF213Q63HN8 5207 aa5.54□□□□□ -1.52
TRIM28-214ENST00000600840 PRSS2P07478 247 aa5.54□□□□□ -1.52
TRIM28-214ENST00000600840 CXCL5P42830 114 aa5.54□□□□□ -1.52
TRIM28-214ENST00000600840 Q1RN00 199 aa5.54□□□□□ -1.52
TRIM28-214ENST00000600840 C9orf116Q5BN46 136 aaPredicted RBP5.54□□□□□ -1.52
TRIM28-214ENST00000600840 CARD19Q96LW7 228 aa5.54□□□□□ -1.52
TRIM28-214ENST00000600840 TEN1Q86WV5 123 aa5.53□□□□□ -1.52
TRIM28-214ENST00000600840 SCGB1A1P11684 91 aa5.52□□□□□ -1.53
TRIM28-214ENST00000600840 CKS1BP61024 79 aa5.52□□□□□ -1.53
TRIM28-214ENST00000600840 MEIG1Q5JSS6 88 aa5.52□□□□□ -1.53
TRIM28-214ENST00000600840 Q6ZRP5 223 aa5.52□□□□□ -1.53
TRIM28-214ENST00000600840 PPDPFLQ8WWR9 84 aa5.52□□□□□ -1.53
TRIM28-214ENST00000600840 PKHD1L1Q86WI1 4243 aa5.52□□□□□ -1.53
TRIM28-214ENST00000600840 A0A096LNI7 61 aa5.51□□□□□ -1.53
TRIM28-214ENST00000600840 H3BT86 120 aa5.51□□□□□ -1.53
TRIM28-214ENST00000600840 TCL1BO95988 128 aa5.51□□□□□ -1.53
TRIM28-214ENST00000600840 KRTAP7-1Q8IUC3 87 aa5.51□□□□□ -1.53
TRIM28-214ENST00000600840 LINC00308Q8TCZ7 52 aa5.51□□□□□ -1.53
TRIM28-214ENST00000600840 TRAV13-2A0A0B4J235 113 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms