RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 TMEM170BQ5T4T1 132 aa7.09□□□□□ -1.27
HIF3A-217ENST00000600236 ORAOV1Q8WV07 137 aa7.09□□□□□ -1.27
HIF3A-217ENST00000600236 TTTY13Q9BZ97 58 aa7.09□□□□□ -1.27
HIF3A-217ENST00000600236 A0A1W2PNN7 141 aa7.08□□□□□ -1.28
HIF3A-217ENST00000600236 LEPROTO15243 131 aa7.08□□□□□ -1.28
HIF3A-217ENST00000600236 SEC11AP67812 179 aa7.08□□□□□ -1.28
HIF3A-217ENST00000600236 SRSF9Q13242 221 aaKnown RBP eCLIP7.08□□□□□ -1.28
HIF3A-217ENST00000600236 TAL2Q16559 108 aa7.08□□□□□ -1.28
HIF3A-217ENST00000600236 IGHV3OR16-9A0A0B4J2B5 98 aa7.07□□□□□ -1.28
HIF3A-217ENST00000600236 BATFQ16520 125 aa7.07□□□□□ -1.28
HIF3A-217ENST00000600236 PLEKHB2Q96CS7 222 aa7.07□□□□□ -1.28
HIF3A-217ENST00000600236 ZNF815PA8K554 130 aa7.06□□□□□ -1.28
HIF3A-217ENST00000600236 J3QQQ9 107 aa7.06□□□□□ -1.28
HIF3A-217ENST00000600236 TSPEAR-AS2P59090 65 aa7.06□□□□□ -1.28
HIF3A-217ENST00000600236 HERVK_113P63121 156 aa7.06□□□□□ -1.28
HIF3A-217ENST00000600236 A0A1B0GV90 55 aa7.05□□□□□ -1.28
HIF3A-217ENST00000600236 KRTAP10-8P60410 259 aa7.05□□□□□ -1.28
HIF3A-217ENST00000600236 C1orf137Q5JT78 98 aa7.05□□□□□ -1.28
HIF3A-217ENST00000600236 GEMIN7Q9H840 131 aaKnown RBP7.05□□□□□ -1.28
HIF3A-217ENST00000600236 PSORS1C2Q9UIG4 136 aa7.05□□□□□ -1.28
HIF3A-217ENST00000600236 H3BRM9 83 aa7.04□□□□□ -1.28
HIF3A-217ENST00000600236 TLX1NBP0CAT3 122 aa7.04□□□□□ -1.28
HIF3A-217ENST00000600236 LGALS3P17931 250 aaKnown RBP7.04□□□□□ -1.28
HIF3A-217ENST00000600236 LINC00242Q5T6M2 205 aa7.04□□□□□ -1.28
HIF3A-217ENST00000600236 PHF5AQ7RTV0 110 aaKnown RBP7.04□□□□□ -1.28
HIF3A-217ENST00000600236 LINC00469Q8N7U9 141 aa7.04□□□□□ -1.28
HIF3A-217ENST00000600236 A0A087WZ39 114 aa7.03□□□□□ -1.28
HIF3A-217ENST00000600236 IGLV5-39A0A0G2JS06 123 aa7.03□□□□□ -1.28
HIF3A-217ENST00000600236 A6NDN8 102 aa7.03□□□□□ -1.28
HIF3A-217ENST00000600236 SPANXB1Q9NS25 103 aaPredicted RBP7.03□□□□□ -1.28
HIF3A-217ENST00000600236 TRBV30A0A0K0K1B3 111 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 GAGE2EQ4V326 116 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 CEND1Q8N111 149 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 DIRC1Q969H9 104 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 C6orf48Q9UBA6 75 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 GAGE2DQ9UEU5 116 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 CDKN2A-AS1Q9UH64 79 aa7.02□□□□□ -1.29
HIF3A-217ENST00000600236 TAX1BP3O14907 124 aa7.01□□□□□ -1.29
HIF3A-217ENST00000600236 IGLV7-43P04211 117 aa7.01□□□□□ -1.29
HIF3A-217ENST00000600236 C10orf25Q5T742 122 aa7.01□□□□□ -1.29
HIF3A-217ENST00000600236 UNQ6190/PRO20217Q6UXQ8 127 aa7.01□□□□□ -1.29
HIF3A-217ENST00000600236 FAM19A5Q7Z5A7 132 aaPredicted RBP7.01□□□□□ -1.29
HIF3A-217ENST00000600236 LINC01561Q8N1V8 128 aa7.01□□□□□ -1.29
HIF3A-217ENST00000600236 UBR4Q5T4S7 5183 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 A0A1B0GWB2 263 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 SMIM1B2RUZ4 78 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 PRSS2P07478 247 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 FXYD2P54710 66 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 UBE2BP63146 152 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 SCGB1D4Q6XE38 83 aa7□□□□□ -1.29
HIF3A-217ENST00000600236 FAM168BA1KXE4 195 aa6.99□□□□□ -1.29
HIF3A-217ENST00000600236 NDUFC2-KCTD14E9PQ53 114 aa6.99□□□□□ -1.29
HIF3A-217ENST00000600236 M0QXV9 152 aa6.99□□□□□ -1.29
HIF3A-217ENST00000600236 SPINK8P0C7L1 97 aa6.99□□□□□ -1.29
HIF3A-217ENST00000600236 KIAA0087Q14695 138 aa6.99□□□□□ -1.29
HIF3A-217ENST00000600236 HIST1H4GQ99525 98 aa6.99□□□□□ -1.29
HIF3A-217ENST00000600236 A0A0J9YXY3 114 aa6.98□□□□□ -1.29
HIF3A-217ENST00000600236 TIMM17BO60830 172 aa6.98□□□□□ -1.29
HIF3A-217ENST00000600236 NDUFA12Q9UI09 145 aa6.98□□□□□ -1.29
HIF3A-217ENST00000600236 TNXBP22105 4242 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 TMEM238LA0A1B0GVL6 79 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 A6NJY4 79 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 TMEM238C9JI98 176 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 H0Y9J4 135 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 CKS1BP61024 79 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 LITAFQ99732 161 aa6.97□□□□□ -1.29
HIF3A-217ENST00000600236 C6orf226Q5I0X4 101 aa6.96□□□□□ -1.3
HIF3A-217ENST00000600236 C2orf82Q6UX34 121 aa6.96□□□□□ -1.3
HIF3A-217ENST00000600236 Q6ZVH6 145 aa6.96□□□□□ -1.3
HIF3A-217ENST00000600236 SPANXDQ9BXN6 97 aa6.96□□□□□ -1.3
HIF3A-217ENST00000600236 SPANXCQ9NY87 97 aa6.96□□□□□ -1.3
HIF3A-217ENST00000600236 TOMM7Q9P0U1 55 aa6.96□□□□□ -1.3
HIF3A-217ENST00000600236 IGLV1-50A0A075B6I6 118 aa6.95□□□□□ -1.3
HIF3A-217ENST00000600236 C9orf118A6NHY6 69 aa6.95□□□□□ -1.3
HIF3A-217ENST00000600236 SMIM13P0DJ93 91 aa6.95□□□□□ -1.3
HIF3A-217ENST00000600236 Q8IZM0 81 aa6.95□□□□□ -1.3
HIF3A-217ENST00000600236 ZNF625Q96I27 306 aaPredicted RBP6.95□□□□□ -1.3
HIF3A-217ENST00000600236 HERV-K104P63124 156 aa6.94□□□□□ -1.3
HIF3A-217ENST00000600236 PRR26Q8N8Z3 221 aa6.94□□□□□ -1.3
HIF3A-217ENST00000600236 PPDPFQ9H3Y8 114 aa6.94□□□□□ -1.3
HIF3A-217ENST00000600236 NHP2Q9NX24 153 aaKnown RBP6.94□□□□□ -1.3
HIF3A-217ENST00000600236 CXCL5P42830 114 aa6.93□□□□□ -1.3
HIF3A-217ENST00000600236 C9orf129Q5T035 196 aaKnown RBP6.93□□□□□ -1.3
HIF3A-217ENST00000600236 SFTA2Q6UW10 78 aa6.93□□□□□ -1.3
HIF3A-217ENST00000600236 KRTAP11-1Q8IUC1 163 aa6.93□□□□□ -1.3
HIF3A-217ENST00000600236 IFITM1P13164 125 aa6.92□□□□□ -1.3
HIF3A-217ENST00000600236 RPL13AP40429 203 aaKnown RBP6.92□□□□□ -1.3
HIF3A-217ENST00000600236 KRTAP7-1Q8IUC3 87 aa6.92□□□□□ -1.3
HIF3A-217ENST00000600236 COX7B2Q8TF08 81 aa6.92□□□□□ -1.3
HIF3A-217ENST00000600236 K7ERJ3 54 aa6.91□□□□□ -1.3
HIF3A-217ENST00000600236 RPL24P83731 157 aaKnown RBP6.91□□□□□ -1.3
HIF3A-217ENST00000600236 A0A0B4J2C4 111 aa6.9□□□□□ -1.3
HIF3A-217ENST00000600236 ZNF861PO60384 105 aa6.9□□□□□ -1.3
HIF3A-217ENST00000600236 UBE2V1Q13404 147 aa6.9□□□□□ -1.3
HIF3A-217ENST00000600236 XAGE1AQ9HD64 81 aa6.9□□□□□ -1.3
HIF3A-217ENST00000600236 A0A1W2PPM0 123 aa6.89□□□□□ -1.31
HIF3A-217ENST00000600236 H3BUT2 72 aa6.89□□□□□ -1.31
HIF3A-217ENST00000600236 VAMP3Q15836 100 aa6.89□□□□□ -1.31
HIF3A-217ENST00000600236 ADAMTSL4-AS1Q5T5F5 129 aa6.89□□□□□ -1.31
HIF3A-217ENST00000600236 MUSTN1Q8IVN3 82 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms