RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 LINC00158P58513 81 aa8.17□□□□□ -1.1
UPF1-208ENST00000600012 NPC2P61916 151 aa8.17□□□□□ -1.1
UPF1-208ENST00000600012 C14orf177Q52M58 125 aa8.17□□□□□ -1.1
UPF1-208ENST00000600012 CARD19Q96LW7 228 aa8.17□□□□□ -1.1
UPF1-208ENST00000600012 HIST1H4GQ99525 98 aa8.17□□□□□ -1.1
UPF1-208ENST00000600012 SPANXB1Q9NS25 103 aaPredicted RBP8.17□□□□□ -1.1
UPF1-208ENST00000600012 TRBV30A0A0K0K1B3 111 aa8.16□□□□□ -1.1
UPF1-208ENST00000600012 HSD52Q0P140 79 aa8.16□□□□□ -1.1
UPF1-208ENST00000600012 CIRBPQ14011 172 aaKnown RBP8.16□□□□□ -1.1
UPF1-208ENST00000600012 SPANXDQ9BXN6 97 aa8.16□□□□□ -1.1
UPF1-208ENST00000600012 SPANXCQ9NY87 97 aa8.16□□□□□ -1.1
UPF1-208ENST00000600012 F8WDY8 70 aa8.15□□□□□ -1.1
UPF1-208ENST00000600012 SRSF9Q13242 221 aaKnown RBP eCLIP8.15□□□□□ -1.1
UPF1-208ENST00000600012 SCXQ7RTU7 201 aa8.15□□□□□ -1.1
UPF1-208ENST00000600012 MIR7-3HGQ8N6C7 128 aa8.15□□□□□ -1.1
UPF1-208ENST00000600012 HINT1P49773 126 aaPredicted RBP8.14□□□□□ -1.11
UPF1-208ENST00000600012 LINC01620Q4KN68 170 aa8.14□□□□□ -1.11
UPF1-208ENST00000600012 EIF4EBP3O60516 100 aaPredicted RBP8.13□□□□□ -1.11
UPF1-208ENST00000600012 TAL2Q16559 108 aa8.13□□□□□ -1.11
UPF1-208ENST00000600012 SERTAD4-AS1Q5TG53 156 aa8.13□□□□□ -1.11
UPF1-208ENST00000600012 MUSTN1Q8IVN3 82 aa8.13□□□□□ -1.11
UPF1-208ENST00000600012 FXYD2P54710 66 aa8.12□□□□□ -1.11
UPF1-208ENST00000600012 CNBPP62633 177 aaKnown RBP8.12□□□□□ -1.11
UPF1-208ENST00000600012 COX17Q14061 63 aa8.12□□□□□ -1.11
UPF1-208ENST00000600012 BATFQ16520 125 aa8.12□□□□□ -1.11
UPF1-208ENST00000600012 SOSTDC1Q6X4U4 206 aa8.12□□□□□ -1.11
UPF1-208ENST00000600012 CEND1Q8N111 149 aa8.12□□□□□ -1.11
UPF1-208ENST00000600012 LINC00308Q8TCZ7 52 aa8.12□□□□□ -1.11
UPF1-208ENST00000600012 RNF151Q2KHN1 245 aa8.11□□□□□ -1.11
UPF1-208ENST00000600012 BVES-AS1Q5T3Y7 98 aa8.11□□□□□ -1.11
UPF1-208ENST00000600012 Q6ZVH6 145 aa8.11□□□□□ -1.11
UPF1-208ENST00000600012 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.1□□□□□ -1.11
UPF1-208ENST00000600012 NDUFC2-KCTD14E9PQ53 114 aa8.1□□□□□ -1.11
UPF1-208ENST00000600012 M0R143 59 aa8.1□□□□□ -1.11
UPF1-208ENST00000600012 OXTP01178 125 aa8.1□□□□□ -1.11
UPF1-208ENST00000600012 KRTAP10-4P60372 401 aaPredicted RBP8.1□□□□□ -1.11
UPF1-208ENST00000600012 CIRBP-AS1Q8TBR5 109 aa8.1□□□□□ -1.11
UPF1-208ENST00000600012 SND1-IT1Q9HBX3 110 aa8.1□□□□□ -1.11
UPF1-208ENST00000600012 IFITM1P13164 125 aa8.09□□□□□ -1.11
UPF1-208ENST00000600012 RPL18AQ02543 176 aaKnown RBP8.09□□□□□ -1.11
UPF1-208ENST00000600012 Q6ZRP5 223 aa8.09□□□□□ -1.11
UPF1-208ENST00000600012 SNHG12Q9BXW3 62 aa8.09□□□□□ -1.11
UPF1-208ENST00000600012 A4D1N5 150 aa8.08□□□□□ -1.12
UPF1-208ENST00000600012 PTTG1IPP53801 180 aa8.08□□□□□ -1.12
UPF1-208ENST00000600012 GAGE2EQ4V326 116 aa8.08□□□□□ -1.12
UPF1-208ENST00000600012 XAGE1AQ9HD64 81 aa8.08□□□□□ -1.12
UPF1-208ENST00000600012 GAGE2DQ9UEU5 116 aa8.08□□□□□ -1.12
UPF1-208ENST00000600012 LOC107984640A0A0U1RRK4 108 aa8.07□□□□□ -1.12
UPF1-208ENST00000600012 TLX1NBP0CAT3 122 aa8.07□□□□□ -1.12
UPF1-208ENST00000600012 RPL24P83731 157 aaKnown RBP8.07□□□□□ -1.12
UPF1-208ENST00000600012 GAGE2BQ13066 116 aa8.06□□□□□ -1.12
UPF1-208ENST00000600012 C9orf163Q8N9P6 203 aa8.06□□□□□ -1.12
UPF1-208ENST00000600012 COPS9Q8WXC6 57 aa8.06□□□□□ -1.12
UPF1-208ENST00000600012 NHP2Q9NX24 153 aaKnown RBP8.06□□□□□ -1.12
UPF1-208ENST00000600012 LRP1Q07954 4544 aaKnown RBP8.06□□□□□ -1.12
UPF1-208ENST00000600012 TMEM238LA0A1B0GVL6 79 aa8.05□□□□□ -1.12
UPF1-208ENST00000600012 A6NJY4 79 aa8.05□□□□□ -1.12
UPF1-208ENST00000600012 K7ERJ3 54 aa8.05□□□□□ -1.12
UPF1-208ENST00000600012 Q8NDZ9 215 aa8.05□□□□□ -1.12
UPF1-208ENST00000600012 A0A096LNI7 61 aa8.04□□□□□ -1.12
UPF1-208ENST00000600012 LOC107984156A0A0G2JMH3 177 aa8.04□□□□□ -1.12
UPF1-208ENST00000600012 C9orf129Q5T035 196 aaKnown RBP8.04□□□□□ -1.12
UPF1-208ENST00000600012 ARL17AQ8IVW1 177 aa8.04□□□□□ -1.12
UPF1-208ENST00000600012 PLA2G2DQ9UNK4 145 aa8.04□□□□□ -1.12
UPF1-208ENST00000600012 IGKV2-24A0A0C4DH68 120 aa8.03□□□□□ -1.12
UPF1-208ENST00000600012 RPL37AP61513 92 aaKnown RBP8.03□□□□□ -1.12
UPF1-208ENST00000600012 PPDPFQ9H3Y8 114 aa8.03□□□□□ -1.12
UPF1-208ENST00000600012 HMCN2Q8NDA2 5059 aa8.02□□□□□ -1.12
UPF1-208ENST00000600012 A6NDN8 102 aa8.02□□□□□ -1.13
UPF1-208ENST00000600012 CFC1BP0CG36 223 aa8.02□□□□□ -1.13
UPF1-208ENST00000600012 CFC1P0CG37 223 aa8.02□□□□□ -1.13
UPF1-208ENST00000600012 FAT3Q8TDW7 4589 aa8.01□□□□□ -1.13
UPF1-208ENST00000600012 IGKV2-28A0A075B6P5 120 aa8.01□□□□□ -1.13
UPF1-208ENST00000600012 NCR3O14931 201 aa8.01□□□□□ -1.13
UPF1-208ENST00000600012 IGKV2D-28P01615 120 aa8.01□□□□□ -1.13
UPF1-208ENST00000600012 CHTF8P0CG12 524 aa8.01□□□□□ -1.13
UPF1-208ENST00000600012 PRR3P79522 188 aaKnown RBP8.01□□□□□ -1.13
UPF1-208ENST00000600012 SDIM1Q6ZPB5 146 aa8.01□□□□□ -1.13
UPF1-208ENST00000600012 A0A0B4J2C4 111 aa8□□□□□ -1.13
UPF1-208ENST00000600012 A0A1B0GWB2 263 aa8□□□□□ -1.13
UPF1-208ENST00000600012 FAM168BA1KXE4 195 aa8□□□□□ -1.13
UPF1-208ENST00000600012 RAB37Q96AX2 223 aa8□□□□□ -1.13
UPF1-208ENST00000600012 PKIGQ9Y2B9 76 aa8□□□□□ -1.13
UPF1-208ENST00000600012 NDUFC2O95298 119 aa7.99□□□□□ -1.13
UPF1-208ENST00000600012 VPREB1P12018 145 aa7.99□□□□□ -1.13
UPF1-208ENST00000600012 LINC00337Q8N6G1 96 aa7.99□□□□□ -1.13
UPF1-208ENST00000600012 PANO1I0J062 215 aa7.98□□□□□ -1.13
UPF1-208ENST00000600012 COL5A1-AS1Q5SY13 56 aa7.98□□□□□ -1.13
UPF1-208ENST00000600012 FAM19A5Q7Z5A7 132 aaPredicted RBP7.98□□□□□ -1.13
UPF1-208ENST00000600012 PKHD1L1Q86WI1 4243 aa7.97□□□□□ -1.13
UPF1-208ENST00000600012 RPL13AP40429 203 aaKnown RBP7.97□□□□□ -1.13
UPF1-208ENST00000600012 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.97□□□□□ -1.13
UPF1-208ENST00000600012 H7C2G1 150 aa7.96□□□□□ -1.14
UPF1-208ENST00000600012 TAX1BP3O14907 124 aa7.96□□□□□ -1.14
UPF1-208ENST00000600012 KRTAP7-1Q8IUC3 87 aa7.96□□□□□ -1.14
UPF1-208ENST00000600012 NAA38Q9BRA0 125 aaKnown RBP7.96□□□□□ -1.14
UPF1-208ENST00000600012 PRO1854Q9UHT4 67 aa7.96□□□□□ -1.14
UPF1-208ENST00000600012 TRAV13-2A0A0B4J235 113 aa7.95□□□□□ -1.14
UPF1-208ENST00000600012 A0A1W2PNN7 141 aa7.95□□□□□ -1.14
UPF1-208ENST00000600012 NKAPP1Q8N9T2 125 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms