RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 TSPEAR-AS2P59090 65 aa11.35□□□□□ -0.59
PNKP-213ENST00000599543 KRTDAPP60985 99 aa11.35□□□□□ -0.59
PNKP-213ENST00000599543 PRR26Q8N8Z3 221 aa11.35□□□□□ -0.59
PNKP-213ENST00000599543 A0A0U1RRA0 63 aa11.34□□□□□ -0.59
PNKP-213ENST00000599543 ERG28Q9UKR5 140 aa11.34□□□□□ -0.59
PNKP-213ENST00000599543 IGLV1-50A0A075B6I6 118 aa11.3□□□□□ -0.6
PNKP-213ENST00000599543 LEPROTO15243 131 aa11.3□□□□□ -0.6
PNKP-213ENST00000599543 LINC01545Q5VT33 79 aa11.3□□□□□ -0.6
PNKP-213ENST00000599543 PET117Q6UWS5 81 aa11.3□□□□□ -0.6
PNKP-213ENST00000599543 NDUFA12Q9UI09 145 aa11.3□□□□□ -0.6
PNKP-213ENST00000599543 LINC00158P58513 81 aa11.29□□□□□ -0.6
PNKP-213ENST00000599543 HERVK_113P61574 105 aa11.29□□□□□ -0.6
PNKP-213ENST00000599543 HIST3H2BBQ8N257 126 aa11.29□□□□□ -0.6
PNKP-213ENST00000599543 SMIM13P0DJ93 91 aa11.28□□□□□ -0.6
PNKP-213ENST00000599543 SND1-IT1Q9HBX3 110 aa11.28□□□□□ -0.6
PNKP-213ENST00000599543 C22orf24Q9Y442 160 aa11.28□□□□□ -0.6
PNKP-213ENST00000599543 J3QQQ9 107 aa11.27□□□□□ -0.61
PNKP-213ENST00000599543 KRTAP1-4P0C5Y4 121 aa11.27□□□□□ -0.61
PNKP-213ENST00000599543 MEIG1Q5JSS6 88 aa11.27□□□□□ -0.61
PNKP-213ENST00000599543 PLEKHB2Q96CS7 222 aa11.27□□□□□ -0.61
PNKP-213ENST00000599543 LPAP08519 4548 aa11.27□□□□□ -0.61
PNKP-213ENST00000599543 ATOH7Q8N100 152 aa11.26□□□□□ -0.61
PNKP-213ENST00000599543 GAGE10A6NGK3 116 aa11.25□□□□□ -0.61
PNKP-213ENST00000599543 S100A6P06703 90 aa11.25□□□□□ -0.61
PNKP-213ENST00000599543 LGALS3P17931 250 aaKnown RBP11.25□□□□□ -0.61
PNKP-213ENST00000599543 LBHQ53QV2 105 aaPredicted RBP11.25□□□□□ -0.61
PNKP-213ENST00000599543 SFTA2Q6UW10 78 aa11.25□□□□□ -0.61
PNKP-213ENST00000599543 Q8NDZ9 215 aa11.25□□□□□ -0.61
PNKP-213ENST00000599543 HIST1H2BLQ99880 126 aa11.25□□□□□ -0.61
PNKP-213ENST00000599543 MYMXA0A1B0GTQ4 84 aa11.24□□□□□ -0.61
PNKP-213ENST00000599543 S100A2P29034 98 aa11.24□□□□□ -0.61
PNKP-213ENST00000599543 RPL13AP40429 203 aaKnown RBP11.24□□□□□ -0.61
PNKP-213ENST00000599543 SNRPEP62304 92 aaKnown RBP11.24□□□□□ -0.61
PNKP-213ENST00000599543 E9PLD3 99 aa11.23□□□□□ -0.61
PNKP-213ENST00000599543 ZNF861PO60384 105 aa11.23□□□□□ -0.61
PNKP-213ENST00000599543 COX17Q14061 63 aa11.23□□□□□ -0.61
PNKP-213ENST00000599543 RPL37AP8A6NKH3 93 aa11.22□□□□□ -0.61
PNKP-213ENST00000599543 HERV-K104P63124 156 aa11.22□□□□□ -0.61
PNKP-213ENST00000599543 DAND5Q8N907 189 aa11.22□□□□□ -0.61
PNKP-213ENST00000599543 IGKV2D-26A0A0A0MRZ7 120 aa11.21□□□□□ -0.61
PNKP-213ENST00000599543 MRPL55Q7Z7F7 128 aaKnown RBP11.21□□□□□ -0.61
PNKP-213ENST00000599543 MIR7-3HGQ8N6C7 128 aa11.21□□□□□ -0.61
PNKP-213ENST00000599543 TTTY13Q9BZ97 58 aa11.21□□□□□ -0.61
PNKP-213ENST00000599543 TP73-AS1Q9UF72 201 aa11.21□□□□□ -0.61
PNKP-213ENST00000599543 C20orf202A1L168 122 aa11.2□□□□□ -0.62
PNKP-213ENST00000599543 NKAPP1Q8N9T2 125 aa11.2□□□□□ -0.62
PNKP-213ENST00000599543 LINC00167Q96N53 147 aa11.2□□□□□ -0.62
PNKP-213ENST00000599543 VPREB1P12018 145 aa11.19□□□□□ -0.62
PNKP-213ENST00000599543 IGLV5-37A0A075B6J1 123 aa11.17□□□□□ -0.62
PNKP-213ENST00000599543 NMUP48645 174 aa11.17□□□□□ -0.62
PNKP-213ENST00000599543 ANKRD39Q53RE8 183 aa11.17□□□□□ -0.62
PNKP-213ENST00000599543 A0A0J9YXY3 114 aa11.16□□□□□ -0.62
PNKP-213ENST00000599543 RPL28P46779 137 aaKnown RBP11.16□□□□□ -0.62
PNKP-213ENST00000599543 IGKV2-28A0A075B6P5 120 aa11.15□□□□□ -0.62
PNKP-213ENST00000599543 C5orf52A6NGY3 159 aa11.15□□□□□ -0.62
PNKP-213ENST00000599543 BCE1O60756 84 aa11.15□□□□□ -0.62
PNKP-213ENST00000599543 IGKV2D-28P01615 120 aa11.15□□□□□ -0.62
PNKP-213ENST00000599543 NPC2P61916 151 aa11.15□□□□□ -0.62
PNKP-213ENST00000599543 BOD1L2Q8IYS8 172 aa11.15□□□□□ -0.62
PNKP-213ENST00000599543 PRR4Q16378 134 aa11.14□□□□□ -0.63
PNKP-213ENST00000599543 ZNF815PA8K554 130 aa11.13□□□□□ -0.63
PNKP-213ENST00000599543 NCR3O14931 201 aa11.13□□□□□ -0.63
PNKP-213ENST00000599543 RPL24P83731 157 aaKnown RBP11.13□□□□□ -0.63
PNKP-213ENST00000599543 ADAMTSL4-AS1Q5T5F5 129 aa11.13□□□□□ -0.63
PNKP-213ENST00000599543 LINC00587B1AMM8 73 aa11.12□□□□□ -0.63
PNKP-213ENST00000599543 EIF4EBP3O60516 100 aaPredicted RBP11.11□□□□□ -0.63
PNKP-213ENST00000599543 TMA7Q9Y2S6 64 aaKnown RBP11.1□□□□□ -0.63
PNKP-213ENST00000599543 TMEM238C9JI98 176 aa11.09□□□□□ -0.63
PNKP-213ENST00000599543 SOSTDC1Q6X4U4 206 aa11.09□□□□□ -0.63
PNKP-213ENST00000599543 A0A087X002 238 aa11.08□□□□□ -0.64
PNKP-213ENST00000599543 CRYGAP11844 174 aa11.08□□□□□ -0.64
PNKP-213ENST00000599543 PCP2Q8IVA1 136 aa11.08□□□□□ -0.64
PNKP-213ENST00000599543 TSPAN13O95857 204 aa11.07□□□□□ -0.64
PNKP-213ENST00000599543 SCGB1D1O95968 90 aa11.07□□□□□ -0.64
PNKP-213ENST00000599543 UBE2AP49459 152 aa11.07□□□□□ -0.64
PNKP-213ENST00000599543 LITAFQ99732 161 aa11.07□□□□□ -0.64
PNKP-213ENST00000599543 M0R378 163 aa11.06□□□□□ -0.64
PNKP-213ENST00000599543 TYMSOSQ8TAI1 123 aa11.06□□□□□ -0.64
PNKP-213ENST00000599543 MIEN1Q9BRT3 115 aa11.05□□□□□ -0.64
PNKP-213ENST00000599543 SCGB1D4Q6XE38 83 aa11.03□□□□□ -0.64
PNKP-213ENST00000599543 TMEM126AQ9H061 195 aa11.03□□□□□ -0.64
PNKP-213ENST00000599543 MUC2Q02817 5179 aa11.02□□□□□ -0.65
PNKP-213ENST00000599543 LOC107984156A0A0G2JMH3 177 aa11.02□□□□□ -0.65
PNKP-213ENST00000599543 AKR1D1P51857 326 aa11.02□□□□□ -0.65
PNKP-213ENST00000599543 PRLHP81277 87 aa11.02□□□□□ -0.65
PNKP-213ENST00000599543 KRTAP13-1Q8IUC0 172 aa11.02□□□□□ -0.65
PNKP-213ENST00000599543 ARL17AQ8IVW1 177 aa11.02□□□□□ -0.65
PNKP-213ENST00000599543 TRBV10-3A0A0K0K1G6 114 aa11.01□□□□□ -0.65
PNKP-213ENST00000599543 TIMM17BO60830 172 aa11.01□□□□□ -0.65
PNKP-213ENST00000599543 FAM19A1Q7Z5A9 133 aa11.01□□□□□ -0.65
PNKP-213ENST00000599543 LINC00308Q8TCZ7 52 aa11.01□□□□□ -0.65
PNKP-213ENST00000599543 ANAPC11Q9NYG5 84 aa11.01□□□□□ -0.65
PNKP-213ENST00000599543 HSBP1L1C9JCN9 74 aa11□□□□□ -0.65
PNKP-213ENST00000599543 FAM229BQ4G0N7 80 aa10.98□□□□□ -0.65
PNKP-213ENST00000599543 SPANXB1Q9NS25 103 aaPredicted RBP10.98□□□□□ -0.65
PNKP-213ENST00000599543 DDTP30046 118 aa10.96□□□□□ -0.65
PNKP-213ENST00000599543 KRTAP13-2Q52LG2 175 aa10.96□□□□□ -0.65
PNKP-213ENST00000599543 NDUFC2O95298 119 aa10.95□□□□□ -0.66
PNKP-213ENST00000599543 TRBV10-2A0A0K0K1G8 114 aa10.94□□□□□ -0.66
PNKP-213ENST00000599543 PRYO14603 147 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms