RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 CRYGAP11844 174 aa8.91□□□□□ -0.98
LIG1-215ENST00000597901 ANAPC11Q9NYG5 84 aa8.91□□□□□ -0.98
LIG1-215ENST00000597901 TMEM238C9JI98 176 aa8.9□□□□□ -0.98
LIG1-215ENST00000597901 SLC7A5P1Q8MH63 180 aa8.9□□□□□ -0.98
LIG1-215ENST00000597901 TMEM126AQ9H061 195 aa8.89□□□□□ -0.99
LIG1-215ENST00000597901 M0R378 163 aa8.88□□□□□ -0.99
LIG1-215ENST00000597901 TSPAN13O95857 204 aa8.88□□□□□ -0.99
LIG1-215ENST00000597901 SMIM13P0DJ93 91 aa8.88□□□□□ -0.99
LIG1-215ENST00000597901 FAM19A1Q7Z5A9 133 aa8.88□□□□□ -0.99
LIG1-215ENST00000597901 TYMSOSQ8TAI1 123 aa8.88□□□□□ -0.99
LIG1-215ENST00000597901 ATP6V1G1O75348 118 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 SERF1AO75920 110 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 LEPROTL1O95214 131 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 LINC00310P59036 64 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 PRLHP81277 87 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 LPAP08519 4548 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 RNF213Q63HN8 5207 aa8.87□□□□□ -0.99
LIG1-215ENST00000597901 H0Y8G0 127 aa8.86□□□□□ -0.99
LIG1-215ENST00000597901 PRR4Q16378 134 aa8.86□□□□□ -0.99
LIG1-215ENST00000597901 COLCA2A8K830 154 aa8.85□□□□□ -0.99
LIG1-215ENST00000597901 HERV-K104P63124 156 aa8.85□□□□□ -0.99
LIG1-215ENST00000597901 FAM229BQ4G0N7 80 aa8.85□□□□□ -0.99
LIG1-215ENST00000597901 KRTAP13-2Q52LG2 175 aa8.85□□□□□ -0.99
LIG1-215ENST00000597901 MEIG1Q5JSS6 88 aa8.85□□□□□ -0.99
LIG1-215ENST00000597901 NDUFA12Q9UI09 145 aa8.85□□□□□ -0.99
LIG1-215ENST00000597901 LINC00587B1AMM8 73 aa8.84□□□□□ -0.99
LIG1-215ENST00000597901 MIR7-3HGQ8N6C7 128 aa8.84□□□□□ -0.99
LIG1-215ENST00000597901 MYMXA0A1B0GTQ4 84 aa8.83□□□□□ -1
LIG1-215ENST00000597901 FABP4P15090 132 aa8.83□□□□□ -1
LIG1-215ENST00000597901 BOD1L2Q8IYS8 172 aa8.83□□□□□ -1
LIG1-215ENST00000597901 PLEKHB2Q96CS7 222 aa8.83□□□□□ -1
LIG1-215ENST00000597901 LEPROTO15243 131 aa8.82□□□□□ -1
LIG1-215ENST00000597901 HSPB8Q9UJY1 196 aa8.82□□□□□ -1
LIG1-215ENST00000597901 IGKV2D-26A0A0A0MRZ7 120 aa8.8□□□□□ -1
LIG1-215ENST00000597901 PLNP26678 52 aa8.8□□□□□ -1
LIG1-215ENST00000597901 TSPEAR-AS2P59090 65 aa8.8□□□□□ -1
LIG1-215ENST00000597901 HIGD2AQ9BW72 106 aa8.8□□□□□ -1
LIG1-215ENST00000597901 MAP1LC3CQ9BXW4 147 aa8.8□□□□□ -1
LIG1-215ENST00000597901 DPM2O94777 84 aa8.79□□□□□ -1
LIG1-215ENST00000597901 PMCHL2Q9BQD1 86 aa8.79□□□□□ -1
LIG1-215ENST00000597901 NCR3O14931 201 aa8.78□□□□□ -1
LIG1-215ENST00000597901 LOC107984156A0A0G2JMH3 177 aa8.77□□□□□ -1.01
LIG1-215ENST00000597901 J3QQQ9 107 aa8.77□□□□□ -1.01
LIG1-215ENST00000597901 IGKCP01834 107 aa8.77□□□□□ -1.01
LIG1-215ENST00000597901 ARL17AQ8IVW1 177 aa8.77□□□□□ -1.01
LIG1-215ENST00000597901 LINC00304Q8N9R0 145 aa8.77□□□□□ -1.01
LIG1-215ENST00000597901 KCNQ1DNQ9H478 68 aa8.77□□□□□ -1.01
LIG1-215ENST00000597901 PRYO14603 147 aa8.76□□□□□ -1.01
LIG1-215ENST00000597901 SPRR1AP35321 89 aa8.76□□□□□ -1.01
LIG1-215ENST00000597901 HERVK_113P61574 105 aa8.76□□□□□ -1.01
LIG1-215ENST00000597901 LINC00337Q8N6G1 96 aa8.76□□□□□ -1.01
LIG1-215ENST00000597901 DAND5Q8N907 189 aa8.76□□□□□ -1.01
LIG1-215ENST00000597901 TRBV10-3A0A0K0K1G6 114 aa8.75□□□□□ -1.01
LIG1-215ENST00000597901 SPRR4Q96PI1 79 aa8.75□□□□□ -1.01
LIG1-215ENST00000597901 KRTAP4-16G5E9R7 235 aaPredicted RBP8.74□□□□□ -1.01
LIG1-215ENST00000597901 LGALS3P17931 250 aaKnown RBP8.74□□□□□ -1.01
LIG1-215ENST00000597901 NMUP48645 174 aa8.74□□□□□ -1.01
LIG1-215ENST00000597901 C3orf22Q8N5N4 141 aa8.74□□□□□ -1.01
LIG1-215ENST00000597901 SMCR5Q8TEV8 140 aa8.74□□□□□ -1.01
LIG1-215ENST00000597901 ETDCA0A1B0GVM5 59 aa8.72□□□□□ -1.01
LIG1-215ENST00000597901 TRBV10-2A0A0K0K1G8 114 aa8.71□□□□□ -1.02
LIG1-215ENST00000597901 A0A0U1RQV1 116 aa8.71□□□□□ -1.02
LIG1-215ENST00000597901 CTAG1AP78358 180 aa8.71□□□□□ -1.02
LIG1-215ENST00000597901 S100A12P80511 92 aa8.71□□□□□ -1.02
LIG1-215ENST00000597901 RETNLBQ9BQ08 111 aa8.71□□□□□ -1.02
LIG1-215ENST00000597901 ZNF706Q9Y5V0 76 aaPredicted RBP8.71□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BKO60814 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BJP06899 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BOP23527 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 DDTP30046 118 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BBP33778 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BDP58876 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BCP62807 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST2H2BEQ16778 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BHQ93079 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BNQ99877 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 HIST1H2BMQ99879 126 aa8.7□□□□□ -1.02
LIG1-215ENST00000597901 B5MCH6 92 aa8.69□□□□□ -1.02
LIG1-215ENST00000597901 E9PLD3 99 aa8.69□□□□□ -1.02
LIG1-215ENST00000597901 SYS1-DBNDD2H3BUS1 97 aa8.69□□□□□ -1.02
LIG1-215ENST00000597901 ADAMTSL4-AS1Q5T5F5 129 aa8.69□□□□□ -1.02
LIG1-215ENST00000597901 A0A0J9YXY3 114 aa8.68□□□□□ -1.02
LIG1-215ENST00000597901 NDUFC2O95298 119 aa8.68□□□□□ -1.02
LIG1-215ENST00000597901 SPAG11AQ6PDA7 123 aa8.68□□□□□ -1.02
LIG1-215ENST00000597901 MIEN1Q9BRT3 115 aa8.68□□□□□ -1.02
LIG1-215ENST00000597901 PPDPFQ9H3Y8 114 aa8.68□□□□□ -1.02
LIG1-215ENST00000597901 SOSTDC1Q6X4U4 206 aa8.67□□□□□ -1.02
LIG1-215ENST00000597901 SPANXB1Q9NS25 103 aaPredicted RBP8.67□□□□□ -1.02
LIG1-215ENST00000597901 EIF4EBP3O60516 100 aaPredicted RBP8.66□□□□□ -1.02
LIG1-215ENST00000597901 IGLV6-57P01721 117 aa8.66□□□□□ -1.02
LIG1-215ENST00000597901 ERC2-IT1O76042 136 aa8.65□□□□□ -1.02
LIG1-215ENST00000597901 NPC2P61916 151 aa8.65□□□□□ -1.02
LIG1-215ENST00000597901 C4orf48Q5BLP8 95 aa8.65□□□□□ -1.02
LIG1-215ENST00000597901 S100A7L2Q5SY68 101 aa8.65□□□□□ -1.02
LIG1-215ENST00000597901 GAGE2AQ6NT46 116 aa8.65□□□□□ -1.02
LIG1-215ENST00000597901 PET117Q6UWS5 81 aa8.65□□□□□ -1.02
LIG1-215ENST00000597901 IGLV7-46A0A075B6I9 117 aa8.64□□□□□ -1.03
LIG1-215ENST00000597901 LINC00483Q53H64 154 aa8.64□□□□□ -1.03
LIG1-215ENST00000597901 LINC01545Q5VT33 79 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms