RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PLEKHB2	Q96CS7	222 aa		6.06	□□□□□ -1.44
LSM4-205	ENST00000597776	COX17	Q14061	63 aa		6.05	□□□□□ -1.44
LSM4-205	ENST00000597776	COX19	Q49B96	90 aa		6.05	□□□□□ -1.44
LSM4-205	ENST00000597776	TMEM170B	Q5T4T1	132 aa		6.05	□□□□□ -1.44
LSM4-205	ENST00000597776	C18orf32	Q8TCD1	76 aa		6.05	□□□□□ -1.44
LSM4-205	ENST00000597776	HIGD2A	Q9BW72	106 aa		6.05	□□□□□ -1.44
LSM4-205	ENST00000597776	HBD	P02042	147 aa		6.04	□□□□□ -1.44
LSM4-205	ENST00000597776	LINC00614	P0C842	121 aa		6.04	□□□□□ -1.44
LSM4-205	ENST00000597776	C10orf91	Q5T1B1	145 aa		6.04	□□□□□ -1.44
LSM4-205	ENST00000597776	BAGE3	Q86Y29	109 aa		6.04	□□□□□ -1.44
LSM4-205	ENST00000597776	RPS10P5	Q9NQ39	176 aa		6.04	□□□□□ -1.44
LSM4-205	ENST00000597776		A0A0U1RRA0	63 aa		6.03	□□□□□ -1.44
LSM4-205	ENST00000597776	LINC00158	P58513	81 aa		6.03	□□□□□ -1.44
LSM4-205	ENST00000597776	RHEB	Q15382	184 aa		6.03	□□□□□ -1.44
LSM4-205	ENST00000597776	SPRR4	Q96PI1	79 aa		6.02	□□□□□ -1.45
LSM4-205	ENST00000597776	PPDPF	Q9H3Y8	114 aa		6.02	□□□□□ -1.45
LSM4-205	ENST00000597776	TRAPPC1	Q9Y5R8	145 aa		6.02	□□□□□ -1.45
LSM4-205	ENST00000597776	SFTA2	Q6UW10	78 aa		6.01	□□□□□ -1.45
LSM4-205	ENST00000597776	CTAG1A	P78358	180 aa		6	□□□□□ -1.45
LSM4-205	ENST00000597776	DAND5	Q8N907	189 aa		6	□□□□□ -1.45
LSM4-205	ENST00000597776	CHTOP	Q9Y3Y2	248 aa	Known RBP	6	□□□□□ -1.45
LSM4-205	ENST00000597776	TMEM223	A0PJW6	202 aa		5.99	□□□□□ -1.45
LSM4-205	ENST00000597776	NCR3	O14931	201 aa		5.99	□□□□□ -1.45
LSM4-205	ENST00000597776	SMIM13	P0DJ93	91 aa		5.99	□□□□□ -1.45
LSM4-205	ENST00000597776	SPAG11A	Q6PDA7	123 aa		5.99	□□□□□ -1.45
LSM4-205	ENST00000597776	BOD1L2	Q8IYS8	172 aa		5.98	□□□□□ -1.45
LSM4-205	ENST00000597776		Q8NBF4	154 aa		5.98	□□□□□ -1.45
LSM4-205	ENST00000597776	ZNF706	Q9Y5V0	76 aa	Predicted RBP	5.98	□□□□□ -1.45
LSM4-205	ENST00000597776	PRY	O14603	147 aa		5.97	□□□□□ -1.45
LSM4-205	ENST00000597776	C4orf48	Q5BLP8	95 aa		5.97	□□□□□ -1.45
LSM4-205	ENST00000597776	MEIG1	Q5JSS6	88 aa		5.97	□□□□□ -1.45
LSM4-205	ENST00000597776	MIR7-3HG	Q8N6C7	128 aa		5.97	□□□□□ -1.45
LSM4-205	ENST00000597776	ATP6V1G1	O75348	118 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	SPRR1A	P35321	89 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	NDUFA5	Q16718	116 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	FP248	Q71RG6	208 aa	Predicted RBP	5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	SVBP	Q8N300	66 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	LINC00337	Q8N6G1	96 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	SMCR5	Q8TEV8	140 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	IFI27L1	Q96BM0	104 aa		5.96	□□□□□ -1.46
LSM4-205	ENST00000597776	TRAV12-1	A0A0B4J245	112 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	TRBV10-3	A0A0K0K1G6	114 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	ETDC	A0A1B0GVM5	59 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	SNAPIN	O95295	136 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	APOC3	P02656	99 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	KRTAP13-3	Q3SY46	172 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	KCNQ1DN	Q9H478	68 aa		5.95	□□□□□ -1.46
LSM4-205	ENST00000597776	HERV-K104	P63124	156 aa		5.93	□□□□□ -1.46
LSM4-205	ENST00000597776	LINC00483	Q53H64	154 aa		5.93	□□□□□ -1.46
LSM4-205	ENST00000597776	GAGE2A	Q6NT46	116 aa		5.93	□□□□□ -1.46
LSM4-205	ENST00000597776	CHCHD1	Q96BP2	118 aa	Known RBP	5.93	□□□□□ -1.46
LSM4-205	ENST00000597776	NDUFA12	Q9UI09	145 aa		5.93	□□□□□ -1.46
LSM4-205	ENST00000597776	IGLV9-49	A0A0B4J1Y8	123 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	KRTAP9-6	A0A140TA67	174 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776		H0Y8G0	127 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	ERC2-IT1	O76042	136 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	SPINK1	P00995	79 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	TSPEAR-AS2	P59090	65 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	MOBP	Q13875	183 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	FAM19A2	Q8N3H0	131 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	YPEL4	Q96NS1	127 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776	KRTAP4-1	Q9BYQ7	146 aa		5.92	□□□□□ -1.46
LSM4-205	ENST00000597776		B5MCH6	92 aa		5.91	□□□□□ -1.46
LSM4-205	ENST00000597776	ASB16-AS1	Q495Z4	193 aa		5.91	□□□□□ -1.46
LSM4-205	ENST00000597776	MYMX	A0A1B0GTQ4	84 aa		5.9	□□□□□ -1.46
LSM4-205	ENST00000597776		Q9BRP9	147 aa		5.9	□□□□□ -1.46
LSM4-205	ENST00000597776	LINC00587	B1AMM8	73 aa		5.89	□□□□□ -1.47
LSM4-205	ENST00000597776	HSBP1	O75506	76 aa		5.89	□□□□□ -1.47
LSM4-205	ENST00000597776	DDT	P30046	118 aa		5.89	□□□□□ -1.47
LSM4-205	ENST00000597776		Q8N377	158 aa		5.89	□□□□□ -1.47
LSM4-205	ENST00000597776	MAP1LC3C	Q9BXW4	147 aa		5.89	□□□□□ -1.47
LSM4-205	ENST00000597776	S100A12	P80511	92 aa		5.88	□□□□□ -1.47
LSM4-205	ENST00000597776	LEPROT	O15243	131 aa		5.87	□□□□□ -1.47
LSM4-205	ENST00000597776		Q6ZRX8	168 aa		5.87	□□□□□ -1.47
LSM4-205	ENST00000597776	LOC107984156	A0A0G2JMH3	177 aa		5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	TRBV10-2	A0A0K0K1G8	114 aa		5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	LINC01547	P58512	204 aa	Predicted RBP	5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	SEC61B	P60468	96 aa	Known RBP	5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	SSBP3-AS1	Q7Z2R9	100 aa		5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	ARL17A	Q8IVW1	177 aa		5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	PMCHL2	Q9BQD1	86 aa		5.86	□□□□□ -1.47
LSM4-205	ENST00000597776	SPANXB1	Q9NS25	103 aa	Predicted RBP	5.86	□□□□□ -1.47
LSM4-205	ENST00000597776		J3QQQ9	107 aa		5.85	□□□□□ -1.47
LSM4-205	ENST00000597776	SERF1A	O75920	110 aa		5.85	□□□□□ -1.47
LSM4-205	ENST00000597776	LEPROTL1	O95214	131 aa		5.85	□□□□□ -1.47
LSM4-205	ENST00000597776	LINC00310	P59036	64 aa		5.85	□□□□□ -1.47
LSM4-205	ENST00000597776	RPS29	P62273	56 aa	Known RBP	5.85	□□□□□ -1.47
LSM4-205	ENST00000597776	MIEN1	Q9BRT3	115 aa		5.85	□□□□□ -1.47
LSM4-205	ENST00000597776	SLC25A20	O43772	301 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	EIF4EBP3	O60516	100 aa	Predicted RBP	5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	IGLV6-57	P01721	117 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	PLN	P26678	52 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	NPC2	P61916	151 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	S100A7L2	Q5SY68	101 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	C9orf153	Q5TBE3	101 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	SOSTDC1	Q6X4U4	206 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	ST20-AS1	Q8NBB2	130 aa		5.84	□□□□□ -1.47
LSM4-205	ENST00000597776	TRAV23DV6	A0A075B6W5	121 aa		5.83	□□□□□ -1.48
LSM4-205	ENST00000597776	DPM2	O94777	84 aa		5.83	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms