RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ANAPC11Q9NYG5 84 aa7.69□□□□□ -1.18
LIG1-212ENST00000596549 M0R378 163 aa7.68□□□□□ -1.18
LIG1-212ENST00000596549 HSBP1O75506 76 aa7.68□□□□□ -1.18
LIG1-212ENST00000596549 TRGC2P03986 189 aa7.68□□□□□ -1.18
LIG1-212ENST00000596549 UBE2AP49459 152 aa7.68□□□□□ -1.18
LIG1-212ENST00000596549 KRTAP13-2Q52LG2 175 aa7.68□□□□□ -1.18
LIG1-212ENST00000596549 A0A0U1RRA0 63 aa7.67□□□□□ -1.18
LIG1-212ENST00000596549 RPL24P83731 157 aaKnown RBP7.67□□□□□ -1.18
LIG1-212ENST00000596549 SERF1AO75920 110 aa7.66□□□□□ -1.18
LIG1-212ENST00000596549 CRYGAP11844 174 aa7.66□□□□□ -1.18
LIG1-212ENST00000596549 FAM19A1Q7Z5A9 133 aa7.66□□□□□ -1.18
LIG1-212ENST00000596549 SMIM13P0DJ93 91 aa7.65□□□□□ -1.18
LIG1-212ENST00000596549 LINC00158P58513 81 aa7.65□□□□□ -1.18
LIG1-212ENST00000596549 TSPEAR-AS2P59090 65 aa7.65□□□□□ -1.18
LIG1-212ENST00000596549 TYMSOSQ8TAI1 123 aa7.65□□□□□ -1.18
LIG1-212ENST00000596549 H0Y8G0 127 aa7.64□□□□□ -1.19
LIG1-212ENST00000596549 SLC7A5P1Q8MH63 180 aa7.64□□□□□ -1.19
LIG1-212ENST00000596549 LEPROTL1O95214 131 aa7.63□□□□□ -1.19
LIG1-212ENST00000596549 TSPAN13O95857 204 aa7.63□□□□□ -1.19
LIG1-212ENST00000596549 PRR4Q16378 134 aa7.63□□□□□ -1.19
LIG1-212ENST00000596549 FAM229BQ4G0N7 80 aa7.62□□□□□ -1.19
LIG1-212ENST00000596549 MEIG1Q5JSS6 88 aa7.62□□□□□ -1.19
LIG1-212ENST00000596549 MIR7-3HGQ8N6C7 128 aa7.62□□□□□ -1.19
LIG1-212ENST00000596549 NDUFA12Q9UI09 145 aa7.62□□□□□ -1.19
LIG1-212ENST00000596549 COLCA2A8K830 154 aa7.61□□□□□ -1.19
LIG1-212ENST00000596549 NCR3O14931 201 aa7.61□□□□□ -1.19
LIG1-212ENST00000596549 HERV-K104P63124 156 aa7.61□□□□□ -1.19
LIG1-212ENST00000596549 BOD1L2Q8IYS8 172 aa7.6□□□□□ -1.19
LIG1-212ENST00000596549 PLEKHB2Q96CS7 222 aa7.6□□□□□ -1.19
LIG1-212ENST00000596549 PMCHL2Q9BQD1 86 aa7.59□□□□□ -1.19
LIG1-212ENST00000596549 HIGD2AQ9BW72 106 aa7.59□□□□□ -1.19
LIG1-212ENST00000596549 PRYO14603 147 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 LEPROTO15243 131 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 FABP4P15090 132 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 PLNP26678 52 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 SPRR1AP35321 89 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 C3orf22Q8N5N4 141 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 DAND5Q8N907 189 aa7.58□□□□□ -1.2
LIG1-212ENST00000596549 MYMXA0A1B0GTQ4 84 aa7.57□□□□□ -1.2
LIG1-212ENST00000596549 KRTAP4-16G5E9R7 235 aaPredicted RBP7.57□□□□□ -1.2
LIG1-212ENST00000596549 LINC00304Q8N9R0 145 aa7.57□□□□□ -1.2
LIG1-212ENST00000596549 HSPB8Q9UJY1 196 aa7.57□□□□□ -1.2
LIG1-212ENST00000596549 IGKV2D-26A0A0A0MRZ7 120 aa7.56□□□□□ -1.2
LIG1-212ENST00000596549 TRBV10-3A0A0K0K1G6 114 aa7.56□□□□□ -1.2
LIG1-212ENST00000596549 ATP6V1G1O75348 118 aa7.56□□□□□ -1.2
LIG1-212ENST00000596549 DPM2O94777 84 aa7.56□□□□□ -1.2
LIG1-212ENST00000596549 SPRR4Q96PI1 79 aa7.56□□□□□ -1.2
LIG1-212ENST00000596549 RETNLBQ9BQ08 111 aa7.56□□□□□ -1.2
LIG1-212ENST00000596549 J3QQQ9 107 aa7.55□□□□□ -1.2
LIG1-212ENST00000596549 IGKCP01834 107 aa7.55□□□□□ -1.2
LIG1-212ENST00000596549 LINC00337Q8N6G1 96 aa7.55□□□□□ -1.2
LIG1-212ENST00000596549 KCNQ1DNQ9H478 68 aa7.55□□□□□ -1.2
LIG1-212ENST00000596549 LOC107984156A0A0G2JMH3 177 aa7.54□□□□□ -1.2
LIG1-212ENST00000596549 LINC00587B1AMM8 73 aa7.54□□□□□ -1.2
LIG1-212ENST00000596549 ARL17AQ8IVW1 177 aa7.54□□□□□ -1.2
LIG1-212ENST00000596549 MAP1LC3CQ9BXW4 147 aa7.54□□□□□ -1.2
LIG1-212ENST00000596549 KRTAP9-2Q9BYQ4 174 aa7.54□□□□□ -1.2
LIG1-212ENST00000596549 HERVK_113P61574 105 aa7.53□□□□□ -1.2
LIG1-212ENST00000596549 SMCR5Q8TEV8 140 aa7.53□□□□□ -1.2
LIG1-212ENST00000596549 HIST1H2BKO60814 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BJP06899 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BOP23527 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BBP33778 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BDP58876 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BCP62807 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST2H2BEQ16778 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BHQ93079 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BNQ99877 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 HIST1H2BMQ99879 126 aa7.52□□□□□ -1.21
LIG1-212ENST00000596549 EIF4EBP3O60516 100 aaPredicted RBP7.51□□□□□ -1.21
LIG1-212ENST00000596549 LGALS3P17931 250 aaKnown RBP7.51□□□□□ -1.21
LIG1-212ENST00000596549 NMUP48645 174 aa7.51□□□□□ -1.21
LIG1-212ENST00000596549 SOSTDC1Q6X4U4 206 aa7.51□□□□□ -1.21
LIG1-212ENST00000596549 ETDCA0A1B0GVM5 59 aa7.5□□□□□ -1.21
LIG1-212ENST00000596549 E9PLD3 99 aa7.5□□□□□ -1.21
LIG1-212ENST00000596549 ZNF706Q9Y5V0 76 aaPredicted RBP7.5□□□□□ -1.21
LIG1-212ENST00000596549 A0A0J9YXY3 114 aa7.49□□□□□ -1.21
LIG1-212ENST00000596549 TRBV10-2A0A0K0K1G8 114 aa7.49□□□□□ -1.21
LIG1-212ENST00000596549 KRTAP9-6A0A140TA67 174 aa7.49□□□□□ -1.21
LIG1-212ENST00000596549 B5MCH6 92 aa7.49□□□□□ -1.21
LIG1-212ENST00000596549 SYS1-DBNDD2H3BUS1 97 aa7.49□□□□□ -1.21
LIG1-212ENST00000596549 DDTP30046 118 aa7.49□□□□□ -1.21
LIG1-212ENST00000596549 SPANXB1Q9NS25 103 aaPredicted RBP7.49□□□□□ -1.21
LIG1-212ENST00000596549 ERC2-IT1O76042 136 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 NPC2P61916 151 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 LINC00483Q53H64 154 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 ADAMTSL4-AS1Q5T5F5 129 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 Q9BRP9 147 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 MIEN1Q9BRT3 115 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 PPDPFQ9H3Y8 114 aa7.48□□□□□ -1.21
LIG1-212ENST00000596549 NDUFC2O95298 119 aa7.47□□□□□ -1.21
LIG1-212ENST00000596549 IGLV6-57P01721 117 aa7.47□□□□□ -1.21
LIG1-212ENST00000596549 CTAG1AP78358 180 aa7.47□□□□□ -1.21
LIG1-212ENST00000596549 MUC2Q02817 5179 aa7.47□□□□□ -1.21
LIG1-212ENST00000596549 TPRXLQ17RH7 258 aa7.46□□□□□ -1.22
LIG1-212ENST00000596549 LINC01545Q5VT33 79 aa7.46□□□□□ -1.22
LIG1-212ENST00000596549 Q6ZRX8 168 aa7.46□□□□□ -1.22
LIG1-212ENST00000596549 Q8NBF4 154 aa7.46□□□□□ -1.22
LIG1-212ENST00000596549 LITAFQ99732 161 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms