RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 USP17L23D6RBM5 183 aa7.42□□□□□ -1.22
VPS4B-206ENST00000591475 ATP5EP2Q5VTU8 51 aa7.42□□□□□ -1.22
VPS4B-206ENST00000591475 IGHV4-28A0A0C4DH34 117 aa7.42□□□□□ -1.22
VPS4B-206ENST00000591475 J3KT08 172 aa7.42□□□□□ -1.22
VPS4B-206ENST00000591475 OXLD1Q5BKU9 147 aa7.42□□□□□ -1.22
VPS4B-206ENST00000591475 CHCHD10Q8WYQ3 142 aaPredicted RBP7.42□□□□□ -1.22
VPS4B-206ENST00000591475 X6R8D5 127 aa7.42□□□□□ -1.22
VPS4B-206ENST00000591475 KRTAP21-3Q3LHN1 58 aa7.4□□□□□ -1.22
VPS4B-206ENST00000591475 EGFEM1PQ0D2K5 195 aa7.4□□□□□ -1.23
VPS4B-206ENST00000591475 C6orf99Q4VX62 202 aa7.4□□□□□ -1.23
VPS4B-206ENST00000591475 IGLV10-54A0A075B6I4 117 aa7.39□□□□□ -1.23
VPS4B-206ENST00000591475 LYRM9A8MSI8 78 aa7.39□□□□□ -1.23
VPS4B-206ENST00000591475 ANGP03950 147 aaKnown RBP7.39□□□□□ -1.23
VPS4B-206ENST00000591475 REG3AQ06141 175 aa7.39□□□□□ -1.23
VPS4B-206ENST00000591475 C9orf116Q5BN46 136 aaPredicted RBP7.39□□□□□ -1.23
VPS4B-206ENST00000591475 UPK3BQ9BT76 320 aa7.39□□□□□ -1.23
VPS4B-206ENST00000591475 TMEM258P61165 79 aa7.39□□□□□ -1.23
VPS4B-206ENST00000591475 LINC00575Q6W349 94 aa7.39□□□□□ -1.23
VPS4B-206ENST00000591475 LOC107984640A0A0U1RRK4 108 aa7.38□□□□□ -1.23
VPS4B-206ENST00000591475 RPS28P62857 69 aaKnown RBP7.38□□□□□ -1.23
VPS4B-206ENST00000591475 LYPD5Q6UWN5 251 aa7.38□□□□□ -1.23
VPS4B-206ENST00000591475 UBL5Q9BZL1 73 aa7.38□□□□□ -1.23
VPS4B-206ENST00000591475 CYSTM1Q9H1C7 97 aa7.38□□□□□ -1.23
VPS4B-206ENST00000591475 CMYA5Q8N3K9 4069 aa7.37□□□□□ -1.23
VPS4B-206ENST00000591475 MUC7Q8TAX7 377 aa7.37□□□□□ -1.23
VPS4B-206ENST00000591475 TRBV10-3A0A0K0K1G6 114 aa7.37□□□□□ -1.23
VPS4B-206ENST00000591475 Q8NDZ9 215 aa7.37□□□□□ -1.23
VPS4B-206ENST00000591475 ZNF561-AS1K7EIQ3 104 aa7.36□□□□□ -1.23
VPS4B-206ENST00000591475 KRTAP10-11P60412 298 aa7.36□□□□□ -1.23
VPS4B-206ENST00000591475 Q8N3U1 123 aa7.36□□□□□ -1.23
VPS4B-206ENST00000591475 GHRHP01286 108 aa7.35□□□□□ -1.23
VPS4B-206ENST00000591475 RBM3P98179 157 aaKnown RBP7.35□□□□□ -1.23
VPS4B-206ENST00000591475 ENHOQ6UWT2 76 aa7.35□□□□□ -1.23
VPS4B-206ENST00000591475 SPAG11BQ08648 103 aa7.35□□□□□ -1.23
VPS4B-206ENST00000591475 NBEAL1Q6ZS30 2694 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 TRAV23DV6A0A075B6W5 121 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 LOC110117498A0A087WWA1 95 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 IGHV4-30-4P0DP06 118 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 APOC4P55056 127 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 UNQ6190/PRO20217Q6UXQ8 127 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 Q6ZQT0 140 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 FAM19A1Q7Z5A9 133 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 MGAM2Q2M2H8 2515 aa7.34□□□□□ -1.23
VPS4B-206ENST00000591475 DAD1P61803 113 aa7.34□□□□□ -1.24
VPS4B-206ENST00000591475 C10orf25Q5T742 122 aa7.34□□□□□ -1.24
VPS4B-206ENST00000591475 FAM19A5Q7Z5A7 132 aaPredicted RBP7.34□□□□□ -1.24
VPS4B-206ENST00000591475 C6orf223Q8N319 242 aa7.34□□□□□ -1.24
VPS4B-206ENST00000591475 LAMTOR3Q9UHA4 124 aa7.34□□□□□ -1.24
VPS4B-206ENST00000591475 NOTCH1P46531 2555 aa7.33□□□□□ -1.24
VPS4B-206ENST00000591475 A0A0J9YWU9 116 aa7.33□□□□□ -1.24
VPS4B-206ENST00000591475 H3BQ85 93 aa7.33□□□□□ -1.24
VPS4B-206ENST00000591475 DEFB4AO15263 64 aa7.33□□□□□ -1.24
VPS4B-206ENST00000591475 IGLV6-57P01721 117 aa7.32□□□□□ -1.24
VPS4B-206ENST00000591475 DEFB135Q30KP9 77 aa7.32□□□□□ -1.24
VPS4B-206ENST00000591475 DPH3Q96FX2 82 aa7.32□□□□□ -1.24
VPS4B-206ENST00000591475 KPRPQ5T749 579 aaPredicted RBP7.3□□□□□ -1.24
VPS4B-206ENST00000591475 LELP1Q5T871 98 aa7.3□□□□□ -1.24
VPS4B-206ENST00000591475 DSCR8Q96T75 97 aa7.3□□□□□ -1.24
VPS4B-206ENST00000591475 NDUFC2-KCTD14E9PQ53 114 aa7.3□□□□□ -1.24
VPS4B-206ENST00000591475 PDE6GP18545 87 aa7.3□□□□□ -1.24
VPS4B-206ENST00000591475 GVQW2A0A096LPI5 108 aaPredicted RBP7.29□□□□□ -1.24
VPS4B-206ENST00000591475 BCE1O60756 84 aa7.29□□□□□ -1.24
VPS4B-206ENST00000591475 Q6ZQY7 126 aa7.29□□□□□ -1.24
VPS4B-206ENST00000591475 PRR34Q9NV39 138 aa7.29□□□□□ -1.24
VPS4B-206ENST00000591475 NBEAL2Q6ZNJ1 2754 aa7.29□□□□□ -1.24
VPS4B-206ENST00000591475 DIRC1Q969H9 104 aa7.28□□□□□ -1.24
VPS4B-206ENST00000591475 KLK12Q9UKR0 248 aa7.28□□□□□ -1.24
VPS4B-206ENST00000591475 CELA1Q9UNI1 258 aa7.28□□□□□ -1.24
VPS4B-206ENST00000591475 DNHD1Q96M86 4753 aa7.28□□□□□ -1.24
VPS4B-206ENST00000591475 DNAH3Q8TD57 4116 aa7.28□□□□□ -1.24
VPS4B-206ENST00000591475 LINC01547P58512 204 aaPredicted RBP7.28□□□□□ -1.24
VPS4B-206ENST00000591475 Q6ZVQ6 151 aa7.28□□□□□ -1.24
VPS4B-206ENST00000591475 M0R2N4 97 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 MIFP14174 115 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 HTN3P15516 51 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 HAMPP81172 84 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 Q8NAQ8 132 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 TRAV7A0A075B6U4 112 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 SPART-AS1P0CW21 52 aa7.27□□□□□ -1.25
VPS4B-206ENST00000591475 C5orf47Q569G3 176 aa7.26□□□□□ -1.25
VPS4B-206ENST00000591475 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.26□□□□□ -1.25
VPS4B-206ENST00000591475 C20orf197Q8N268 126 aa7.26□□□□□ -1.25
VPS4B-206ENST00000591475 C6orf48Q9UBA6 75 aa7.26□□□□□ -1.25
VPS4B-206ENST00000591475 COX7BP24311 80 aa7.25□□□□□ -1.25
VPS4B-206ENST00000591475 CXCL6P80162 114 aa7.25□□□□□ -1.25
VPS4B-206ENST00000591475 PRB2P02812 416 aaPredicted RBP7.25□□□□□ -1.25
VPS4B-206ENST00000591475 XAGE1AQ9HD64 81 aa7.25□□□□□ -1.25
VPS4B-206ENST00000591475 ZNF73O43830 326 aaPredicted RBP7.24□□□□□ -1.25
VPS4B-206ENST00000591475 OXTP01178 125 aa7.24□□□□□ -1.25
VPS4B-206ENST00000591475 TRBV7-6A0A0J9YX20 115 aa7.23□□□□□ -1.25
VPS4B-206ENST00000591475 K7EIL1 84 aa7.23□□□□□ -1.25
VPS4B-206ENST00000591475 ELOF1P60002 83 aaKnown RBP7.23□□□□□ -1.25
VPS4B-206ENST00000591475 TRBV7-4A0A0J9YYF1 115 aa7.23□□□□□ -1.25
VPS4B-206ENST00000591475 FAM236DA0A1B0GTK5 79 aa7.22□□□□□ -1.25
VPS4B-206ENST00000591475 FAM236CP0DP71 79 aa7.22□□□□□ -1.25
VPS4B-206ENST00000591475 LCE2DQ5TA82 110 aaPredicted RBP7.22□□□□□ -1.25
VPS4B-206ENST00000591475 TRAV10A0A0B4J240 114 aa7.21□□□□□ -1.26
VPS4B-206ENST00000591475 VPREB1P12018 145 aa7.21□□□□□ -1.26
VPS4B-206ENST00000591475 M0R378 163 aa7.2□□□□□ -1.26
VPS4B-206ENST00000591475 CAMK2N2Q96S95 79 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms