RNA–Protein interactions for RNA: ENST00000581514.1

SCN4A-202, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

TSL 3

Gene SCN4A, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-202ENST00000581514 CLLU1Q5K131 121 aa8.46□□□□□ -1.06
SCN4A-202ENST00000581514 SPRR4Q96PI1 79 aa8.46□□□□□ -1.06
SCN4A-202ENST00000581514 SFTA2Q6UW10 78 aa8.45□□□□□ -1.06
SCN4A-202ENST00000581514 FP248Q71RG6 208 aaPredicted RBP8.45□□□□□ -1.06
SCN4A-202ENST00000581514 C11orf86A6NJI1 115 aa8.44□□□□□ -1.06
SCN4A-202ENST00000581514 UQCC3Q6UW78 93 aa8.44□□□□□ -1.06
SCN4A-202ENST00000581514 C4orf48Q5BLP8 95 aa8.43□□□□□ -1.06
SCN4A-202ENST00000581514 TMEM170BQ5T4T1 132 aa8.43□□□□□ -1.06
SCN4A-202ENST00000581514 URB1-AS1Q96HZ7 61 aa8.43□□□□□ -1.06
SCN4A-202ENST00000581514 ZNF706Q9Y5V0 76 aaPredicted RBP8.43□□□□□ -1.06
SCN4A-202ENST00000581514 HBDP02042 147 aa8.42□□□□□ -1.06
SCN4A-202ENST00000581514 LINC00158P58513 81 aa8.42□□□□□ -1.06
SCN4A-202ENST00000581514 SEC11CQ9BY50 192 aa8.42□□□□□ -1.06
SCN4A-202ENST00000581514 LINC00614P0C842 121 aa8.41□□□□□ -1.06
SCN4A-202ENST00000581514 PMCHL1Q16048 86 aa8.41□□□□□ -1.06
SCN4A-202ENST00000581514 KRTAP13-3Q3SY46 172 aa8.41□□□□□ -1.06
SCN4A-202ENST00000581514 BAGE3Q86Y29 109 aa8.41□□□□□ -1.06
SCN4A-202ENST00000581514 LINC00337Q8N6G1 96 aa8.41□□□□□ -1.06
SCN4A-202ENST00000581514 Q8NBF4 154 aa8.41□□□□□ -1.06
SCN4A-202ENST00000581514 DAND5Q8N907 189 aa8.4□□□□□ -1.06
SCN4A-202ENST00000581514 C18orf32Q8TCD1 76 aa8.4□□□□□ -1.06
SCN4A-202ENST00000581514 A0A0U1RRA0 63 aa8.39□□□□□ -1.07
SCN4A-202ENST00000581514 PRYO14603 147 aa8.39□□□□□ -1.07
SCN4A-202ENST00000581514 ASB16-AS1Q495Z4 193 aa8.39□□□□□ -1.07
SCN4A-202ENST00000581514 SPRR1AP35321 89 aa8.37□□□□□ -1.07
SCN4A-202ENST00000581514 SMCR5Q8TEV8 140 aa8.37□□□□□ -1.07
SCN4A-202ENST00000581514 CHTOPQ9Y3Y2 248 aaKnown RBP8.37□□□□□ -1.07
SCN4A-202ENST00000581514 TMEM223A0PJW6 202 aa8.36□□□□□ -1.07
SCN4A-202ENST00000581514 NCR3O14931 201 aa8.36□□□□□ -1.07
SCN4A-202ENST00000581514 SPINK1P00995 79 aa8.36□□□□□ -1.07
SCN4A-202ENST00000581514 BOD1L2Q8IYS8 172 aa8.36□□□□□ -1.07
SCN4A-202ENST00000581514 KCNQ1DNQ9H478 68 aa8.36□□□□□ -1.07
SCN4A-202ENST00000581514 TRAPPC1Q9Y5R8 145 aa8.36□□□□□ -1.07
SCN4A-202ENST00000581514 KRTAP4-16G5E9R7 235 aaPredicted RBP8.35□□□□□ -1.07
SCN4A-202ENST00000581514 ATP6V1G1O75348 118 aa8.35□□□□□ -1.07
SCN4A-202ENST00000581514 SMIM13P0DJ93 91 aa8.35□□□□□ -1.07
SCN4A-202ENST00000581514 RHEBQ15382 184 aa8.35□□□□□ -1.07
SCN4A-202ENST00000581514 KRTAP4-1Q9BYQ7 146 aa8.35□□□□□ -1.07
SCN4A-202ENST00000581514 RPS10P5Q9NQ39 176 aa8.35□□□□□ -1.07
SCN4A-202ENST00000581514 ETDCA0A1B0GVM5 59 aa8.34□□□□□ -1.07
SCN4A-202ENST00000581514 LINC01547P58512 204 aaPredicted RBP8.34□□□□□ -1.07
SCN4A-202ENST00000581514 LINC00483Q53H64 154 aa8.34□□□□□ -1.07
SCN4A-202ENST00000581514 MEIG1Q5JSS6 88 aa8.33□□□□□ -1.08
SCN4A-202ENST00000581514 C10orf91Q5T1B1 145 aa8.33□□□□□ -1.08
SCN4A-202ENST00000581514 MIR7-3HGQ8N6C7 128 aa8.33□□□□□ -1.08
SCN4A-202ENST00000581514 SEC61BP60468 96 aaKnown RBP8.32□□□□□ -1.08
SCN4A-202ENST00000581514 IFITM2Q01629 132 aa8.32□□□□□ -1.08
SCN4A-202ENST00000581514 TRAV12-1A0A0B4J245 112 aa8.31□□□□□ -1.08
SCN4A-202ENST00000581514 TRBV10-3A0A0K0K1G6 114 aa8.31□□□□□ -1.08
SCN4A-202ENST00000581514 HERV-K104P63124 156 aa8.31□□□□□ -1.08
SCN4A-202ENST00000581514 GAGE2AQ6NT46 116 aa8.31□□□□□ -1.08
SCN4A-202ENST00000581514 COMMD7Q86VX2 200 aa8.31□□□□□ -1.08
SCN4A-202ENST00000581514 MOBPQ13875 183 aa8.3□□□□□ -1.08
SCN4A-202ENST00000581514 NDUFA12Q9UI09 145 aa8.3□□□□□ -1.08
SCN4A-202ENST00000581514 IGLV9-49A0A0B4J1Y8 123 aa8.29□□□□□ -1.08
SCN4A-202ENST00000581514 B5MCH6 92 aa8.29□□□□□ -1.08
SCN4A-202ENST00000581514 RPS29P62273 56 aaKnown RBP8.29□□□□□ -1.08
SCN4A-202ENST00000581514 Q8N377 158 aa8.29□□□□□ -1.08
SCN4A-202ENST00000581514 IFI27L1Q96BM0 104 aa8.29□□□□□ -1.08
SCN4A-202ENST00000581514 LINC00587B1AMM8 73 aa8.28□□□□□ -1.08
SCN4A-202ENST00000581514 ERC2-IT1O76042 136 aa8.28□□□□□ -1.08
SCN4A-202ENST00000581514 S100A12P80511 92 aa8.28□□□□□ -1.08
SCN4A-202ENST00000581514 LCE2DQ5TA82 110 aaPredicted RBP8.28□□□□□ -1.08
SCN4A-202ENST00000581514 SSBP3-AS1Q7Z2R9 100 aa8.28□□□□□ -1.08
SCN4A-202ENST00000581514 FAM19A2Q8N3H0 131 aa8.28□□□□□ -1.08
SCN4A-202ENST00000581514 MAP1LC3CQ9BXW4 147 aa8.26□□□□□ -1.09
SCN4A-202ENST00000581514 MYMXA0A1B0GTQ4 84 aa8.25□□□□□ -1.09
SCN4A-202ENST00000581514 SLC25A20O43772 301 aa8.25□□□□□ -1.09
SCN4A-202ENST00000581514 CHCHD1Q96BP2 118 aaKnown RBP8.25□□□□□ -1.09
SCN4A-202ENST00000581514 Q9BRP9 147 aa8.25□□□□□ -1.09
SCN4A-202ENST00000581514 DDTP30046 118 aa8.24□□□□□ -1.09
SCN4A-202ENST00000581514 XP32Q5T750 250 aa8.24□□□□□ -1.09
SCN4A-202ENST00000581514 LOC107984156A0A0G2JMH3 177 aa8.23□□□□□ -1.09
SCN4A-202ENST00000581514 TRBV10-2A0A0K0K1G8 114 aa8.23□□□□□ -1.09
SCN4A-202ENST00000581514 Q6ZRX8 168 aa8.23□□□□□ -1.09
SCN4A-202ENST00000581514 ARL17AQ8IVW1 177 aa8.23□□□□□ -1.09
SCN4A-202ENST00000581514 TSPEAR-AS2P59090 65 aa8.22□□□□□ -1.09
SCN4A-202ENST00000581514 SPANXB1Q9NS25 103 aaPredicted RBP8.2□□□□□ -1.1
SCN4A-202ENST00000581514 FSIP2Q5CZC0 6907 aa8.19□□□□□ -1.1
SCN4A-202ENST00000581514 LEPROTO15243 131 aa8.19□□□□□ -1.1
SCN4A-202ENST00000581514 APOC3P02656 99 aa8.19□□□□□ -1.1
SCN4A-202ENST00000581514 C9orf153Q5TBE3 101 aa8.19□□□□□ -1.1
SCN4A-202ENST00000581514 H0Y8G0 127 aa8.18□□□□□ -1.1
SCN4A-202ENST00000581514 HSBP1O75506 76 aa8.18□□□□□ -1.1
SCN4A-202ENST00000581514 IGLV6-57P01721 117 aa8.18□□□□□ -1.1
SCN4A-202ENST00000581514 LCE2CQ5TA81 110 aa8.18□□□□□ -1.1
SCN4A-202ENST00000581514 SNAPINO95295 136 aa8.17□□□□□ -1.1
SCN4A-202ENST00000581514 JOSD1Q15040 202 aaPredicted RBP8.17□□□□□ -1.1
SCN4A-202ENST00000581514 S100A7L2Q5SY68 101 aa8.17□□□□□ -1.1
SCN4A-202ENST00000581514 YPEL4Q96NS1 127 aa8.17□□□□□ -1.1
SCN4A-202ENST00000581514 MIEN1Q9BRT3 115 aa8.17□□□□□ -1.1
SCN4A-202ENST00000581514 CRCT1Q9UGL9 99 aa8.17□□□□□ -1.1
SCN4A-202ENST00000581514 J3QQQ9 107 aa8.16□□□□□ -1.1
SCN4A-202ENST00000581514 NDUFC2O95298 119 aa8.16□□□□□ -1.1
SCN4A-202ENST00000581514 TRAV23DV6A0A075B6W5 121 aa8.15□□□□□ -1.1
SCN4A-202ENST00000581514 SVBPQ8N300 66 aa8.15□□□□□ -1.1
SCN4A-202ENST00000581514 ST20-AS1Q8NBB2 130 aa8.15□□□□□ -1.1
SCN4A-202ENST00000581514 PLNP26678 52 aa8.14□□□□□ -1.11
SCN4A-202ENST00000581514 NDUFA5Q16718 116 aa8.14□□□□□ -1.11
SCN4A-202ENST00000581514 KRTAP19-2Q3LHN2 52 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms