RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 A0A1W2PPM0 123 aa6.93□□□□□ -1.3
SS18-217ENST00000580958 H7C2G1 150 aa6.93□□□□□ -1.3
SS18-217ENST00000580958 Q6ZRU5 148 aa6.93□□□□□ -1.3
SS18-217ENST00000580958 F8WDY8 70 aa6.92□□□□□ -1.3
SS18-217ENST00000580958 LECT2O14960 151 aa6.92□□□□□ -1.3
SS18-217ENST00000580958 RPL13AP40429 203 aaKnown RBP6.92□□□□□ -1.3
SS18-217ENST00000580958 TTC32Q5I0X7 151 aa6.92□□□□□ -1.3
SS18-217ENST00000580958 WWC2-AS2Q96NR7 200 aa6.92□□□□□ -1.3
SS18-217ENST00000580958 SND1-IT1Q9HBX3 110 aa6.92□□□□□ -1.3
SS18-217ENST00000580958 FABP2P12104 132 aa6.91□□□□□ -1.3
SS18-217ENST00000580958 SYCNQ0VAF6 134 aa6.91□□□□□ -1.3
SS18-217ENST00000580958 Q1RN00 199 aa6.91□□□□□ -1.3
SS18-217ENST00000580958 KMT2AQ03164 3969 aa6.91□□□□□ -1.3
SS18-217ENST00000580958 DNAH17Q9UFH2 4485 aa6.9□□□□□ -1.3
SS18-217ENST00000580958 LOC107984156A0A0G2JMH3 177 aa6.9□□□□□ -1.3
SS18-217ENST00000580958 ARL17AQ8IVW1 177 aa6.9□□□□□ -1.3
SS18-217ENST00000580958 SPCS1Q9Y6A9 102 aa6.9□□□□□ -1.3
SS18-217ENST00000580958 IGKV2-28A0A075B6P5 120 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 K7EP34 96 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 M0R2N4 97 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 PSCAO43653 123 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 IGKV2D-28P01615 120 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 WFDC2Q14508 124 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 CARD19Q96LW7 228 aa6.89□□□□□ -1.31
SS18-217ENST00000580958 HECTD4Q9Y4D8 3996 aa6.88□□□□□ -1.31
SS18-217ENST00000580958 GAGE10A6NGK3 116 aa6.88□□□□□ -1.31
SS18-217ENST00000580958 SLPIP03973 132 aa6.88□□□□□ -1.31
SS18-217ENST00000580958 PSMB2P49721 201 aa6.88□□□□□ -1.31
SS18-217ENST00000580958 UBE2V1Q13404 147 aa6.88□□□□□ -1.31
SS18-217ENST00000580958 LINC00337Q8N6G1 96 aa6.88□□□□□ -1.31
SS18-217ENST00000580958 GTF2H5Q6ZYL4 71 aa6.87□□□□□ -1.31
SS18-217ENST00000580958 TRAV13-2A0A0B4J235 113 aa6.86□□□□□ -1.31
SS18-217ENST00000580958 SCGB1C2P0DMR2 95 aa6.86□□□□□ -1.31
SS18-217ENST00000580958 RNF151Q2KHN1 245 aa6.86□□□□□ -1.31
SS18-217ENST00000580958 LCE1DQ5T752 114 aa6.86□□□□□ -1.31
SS18-217ENST00000580958 Q8NDZ9 215 aa6.86□□□□□ -1.31
SS18-217ENST00000580958 XAGE1AQ9HD64 81 aa6.86□□□□□ -1.31
SS18-217ENST00000580958 FRAS1Q86XX4 4008 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 NDUFC2-KCTD14E9PQ53 114 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 NCR3O14931 201 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 TRIAP1O43715 76 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 NDUFC2O95298 119 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 PRR3P79522 188 aaKnown RBP6.85□□□□□ -1.31
SS18-217ENST00000580958 GAGE2EQ4V326 116 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 LYRM7Q5U5X0 104 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 Q6ZRN7 208 aaPredicted RBP6.85□□□□□ -1.31
SS18-217ENST00000580958 GAGE2DQ9UEU5 116 aa6.85□□□□□ -1.31
SS18-217ENST00000580958 C3orf84H3BNL1 204 aa6.84□□□□□ -1.31
SS18-217ENST00000580958 LY6G6CO95867 125 aa6.84□□□□□ -1.31
SS18-217ENST00000580958 Q6ZR54 194 aa6.84□□□□□ -1.31
SS18-217ENST00000580958 Q6ZRP5 223 aa6.84□□□□□ -1.31
SS18-217ENST00000580958 OR13C6PQ8NH95 151 aa6.84□□□□□ -1.31
SS18-217ENST00000580958 TCL1BO95988 128 aa6.83□□□□□ -1.32
SS18-217ENST00000580958 TLX1NBP0CAT3 122 aa6.83□□□□□ -1.32
SS18-217ENST00000580958 RPL18AQ02543 176 aaKnown RBP6.83□□□□□ -1.32
SS18-217ENST00000580958 C14orf177Q52M58 125 aa6.83□□□□□ -1.32
SS18-217ENST00000580958 LINC00476Q8WZB0 136 aa6.83□□□□□ -1.32
SS18-217ENST00000580958 LRCOL1A6NCL2 159 aa6.82□□□□□ -1.32
SS18-217ENST00000580958 KRTAP4-7Q9BYR0 210 aa6.82□□□□□ -1.32
SS18-217ENST00000580958 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.81□□□□□ -1.32
SS18-217ENST00000580958 LOC107984640A0A0U1RRK4 108 aa6.81□□□□□ -1.32
SS18-217ENST00000580958 H3BMG7 143 aa6.81□□□□□ -1.32
SS18-217ENST00000580958 COX6CP09669 75 aa6.81□□□□□ -1.32
SS18-217ENST00000580958 C9orf129Q5T035 196 aaKnown RBP6.81□□□□□ -1.32
SS18-217ENST00000580958 SMIM11BQ8TCY0 68 aa6.81□□□□□ -1.32
SS18-217ENST00000580958 TRBV20-1A0A075B6N2 111 aa6.8□□□□□ -1.32
SS18-217ENST00000580958 VPREB1P12018 145 aa6.8□□□□□ -1.32
SS18-217ENST00000580958 RPL28P46779 137 aaKnown RBP6.8□□□□□ -1.32
SS18-217ENST00000580958 CNBPP62633 177 aaKnown RBP6.8□□□□□ -1.32
SS18-217ENST00000580958 GAGE2BQ13066 116 aa6.8□□□□□ -1.32
SS18-217ENST00000580958 CLEC2BQ92478 149 aa6.8□□□□□ -1.32
SS18-217ENST00000580958 SACSQ9NZJ4 4579 aa6.79□□□□□ -1.32
SS18-217ENST00000580958 DNAH11Q96DT5 4516 aa6.79□□□□□ -1.32
SS18-217ENST00000580958 TRBV10-2A0A0K0K1G8 114 aa6.79□□□□□ -1.32
SS18-217ENST00000580958 S100A7L2Q5SY68 101 aa6.79□□□□□ -1.32
SS18-217ENST00000580958 ATXN8Q156A1 80 aa6.78□□□□□ -1.32
SS18-217ENST00000580958 C1orf134Q5TEV5 83 aa6.78□□□□□ -1.32
SS18-217ENST00000580958 MTURNQ8N3F0 131 aa6.78□□□□□ -1.32
SS18-217ENST00000580958 TMEM126AQ9H061 195 aa6.78□□□□□ -1.32
SS18-217ENST00000580958 HYDINQ4G0P3 5121 aa6.78□□□□□ -1.32
SS18-217ENST00000580958 A0A087WTM6 91 aa6.77□□□□□ -1.33
SS18-217ENST00000580958 M0R378 163 aa6.77□□□□□ -1.33
SS18-217ENST00000580958 SERTAD4-AS1Q5TG53 156 aa6.77□□□□□ -1.33
SS18-217ENST00000580958 PRO0461Q9UI25 63 aa6.77□□□□□ -1.33
SS18-217ENST00000580958 DNAH5Q8TE73 4624 aa6.77□□□□□ -1.33
SS18-217ENST00000580958 DNAH8Q96JB1 4490 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 TRBV10-3A0A0K0K1G6 114 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 LST1O00453 97 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 IGLV6-57P01721 117 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 LINC01620Q4KN68 170 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 Q8N814 137 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 PLA2G2DQ9UNK4 145 aa6.76□□□□□ -1.33
SS18-217ENST00000580958 A0A096LNI7 61 aa6.75□□□□□ -1.33
SS18-217ENST00000580958 FAM168BA1KXE4 195 aa6.75□□□□□ -1.33
SS18-217ENST00000580958 NKAPP1Q8N9T2 125 aa6.75□□□□□ -1.33
SS18-217ENST00000580958 FAM218AQ96MZ4 157 aa6.75□□□□□ -1.33
SS18-217ENST00000580958 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.75□□□□□ -1.33
SS18-217ENST00000580958 IGKV2-24A0A0C4DH68 120 aa6.74□□□□□ -1.33
SS18-217ENST00000580958 C9JAW5 83 aa6.74□□□□□ -1.33
SS18-217ENST00000580958 C9orf163Q8N9P6 203 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms