RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PPDPFQ9H3Y8 114 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 Q9HAA7 133 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 PRO1854Q9UHT4 67 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 ERG28Q9UKR5 140 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 A0A0B4J2C4 111 aa6.74□□□□□ -1.33
SS18-207ENST00000577636 J3QL48 77 aa6.74□□□□□ -1.33
SS18-207ENST00000577636 PFN2P35080 140 aa6.74□□□□□ -1.33
SS18-207ENST00000577636 HAMPP81172 84 aa6.74□□□□□ -1.33
SS18-207ENST00000577636 GTF2H5Q6ZYL4 71 aa6.74□□□□□ -1.33
SS18-207ENST00000577636 DAND5Q8N907 189 aa6.74□□□□□ -1.33
SS18-207ENST00000577636 A0A1W2PPM0 123 aa6.73□□□□□ -1.33
SS18-207ENST00000577636 F8WDY8 70 aa6.73□□□□□ -1.33
SS18-207ENST00000577636 KRTAP10-1P60331 282 aa6.73□□□□□ -1.33
SS18-207ENST00000577636 Q1RN00 199 aa6.73□□□□□ -1.33
SS18-207ENST00000577636 MIR7-3HGQ8N6C7 128 aa6.73□□□□□ -1.33
SS18-207ENST00000577636 FAM229AH3BQW9 127 aa6.72□□□□□ -1.33
SS18-207ENST00000577636 CFC1BP0CG36 223 aa6.72□□□□□ -1.33
SS18-207ENST00000577636 CFC1P0CG37 223 aa6.72□□□□□ -1.33
SS18-207ENST00000577636 KIAA0087Q14695 138 aa6.72□□□□□ -1.33
SS18-207ENST00000577636 C2orf82Q6UX34 121 aa6.72□□□□□ -1.33
SS18-207ENST00000577636 CAMK2N2Q96S95 79 aa6.72□□□□□ -1.33
SS18-207ENST00000577636 DMBT1Q9UGM3 2413 aaPredicted RBP6.71□□□□□ -1.33
SS18-207ENST00000577636 GAGE10A6NGK3 116 aa6.71□□□□□ -1.34
SS18-207ENST00000577636 PSMB2P49721 201 aa6.71□□□□□ -1.34
SS18-207ENST00000577636 SMCPP49901 116 aaPredicted RBP6.71□□□□□ -1.34
SS18-207ENST00000577636 Q6ZRN7 208 aaPredicted RBP6.71□□□□□ -1.34
SS18-207ENST00000577636 C2orf48Q96LS8 159 aa6.71□□□□□ -1.34
SS18-207ENST00000577636 TRBV30A0A0K0K1B3 111 aa6.7□□□□□ -1.34
SS18-207ENST00000577636 NTN5Q8WTR8 489 aaPredicted RBP6.7□□□□□ -1.34
SS18-207ENST00000577636 SND1-IT1Q9HBX3 110 aa6.7□□□□□ -1.34
SS18-207ENST00000577636 FAT1Q14517 4588 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 GVQW2A0A096LPI5 108 aaPredicted RBP6.69□□□□□ -1.34
SS18-207ENST00000577636 TRAV13-2A0A0B4J235 113 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 LOC107984156A0A0G2JMH3 177 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 H7C2G1 150 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 PSCAO43653 123 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 TSPAN13O95857 204 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 COX6CP09669 75 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 SCGB1C2P0DMR2 95 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 UBE2V1Q13404 147 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 HIGD2BQ4VC39 106 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 KRTAP26-1Q6PEX3 210 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 UNQ6190/PRO20217Q6UXQ8 127 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 ARL17AQ8IVW1 177 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 NAA38Q9BRA0 125 aaKnown RBP6.69□□□□□ -1.34
SS18-207ENST00000577636 SPCS1Q9Y6A9 102 aa6.69□□□□□ -1.34
SS18-207ENST00000577636 FLG2Q5D862 2391 aaPredicted RBP6.68□□□□□ -1.34
SS18-207ENST00000577636 A0A087WTM6 91 aa6.68□□□□□ -1.34
SS18-207ENST00000577636 VPS13BQ7Z7G8 4022 aa6.68□□□□□ -1.34
SS18-207ENST00000577636 K7EP34 96 aa6.67□□□□□ -1.34
SS18-207ENST00000577636 RPL13AP40429 203 aaKnown RBP6.67□□□□□ -1.34
SS18-207ENST00000577636 C15orf56Q8N910 161 aa6.67□□□□□ -1.34
SS18-207ENST00000577636 TRBV20-1A0A075B6N2 111 aa6.66□□□□□ -1.34
SS18-207ENST00000577636 SYCNQ0VAF6 134 aa6.66□□□□□ -1.34
SS18-207ENST00000577636 SOSTDC1Q6X4U4 206 aa6.66□□□□□ -1.34
SS18-207ENST00000577636 LINC00526Q96FQ7 95 aa6.66□□□□□ -1.34
SS18-207ENST00000577636 USP17L23D6RBM5 183 aa6.65□□□□□ -1.34
SS18-207ENST00000577636 C14orf177Q52M58 125 aa6.65□□□□□ -1.34
SS18-207ENST00000577636 C9orf116Q5BN46 136 aaPredicted RBP6.65□□□□□ -1.34
SS18-207ENST00000577636 C10orf25Q5T742 122 aa6.65□□□□□ -1.34
SS18-207ENST00000577636 C6orf48Q9UBA6 75 aa6.65□□□□□ -1.34
SS18-207ENST00000577636 MYCBP2O75592 4640 aa6.65□□□□□ -1.34
SS18-207ENST00000577636 NDUFC2O95298 119 aa6.64□□□□□ -1.35
SS18-207ENST00000577636 OR13C6PQ8NH95 151 aa6.64□□□□□ -1.35
SS18-207ENST00000577636 CARD19Q96LW7 228 aa6.64□□□□□ -1.35
SS18-207ENST00000577636 IGLV5-52A0A0A0MRZ9 124 aa6.63□□□□□ -1.35
SS18-207ENST00000577636 NDUFC2-KCTD14E9PQ53 114 aa6.63□□□□□ -1.35
SS18-207ENST00000577636 EIF4EBP3O60516 100 aaPredicted RBP6.63□□□□□ -1.35
SS18-207ENST00000577636 RNF151Q2KHN1 245 aa6.63□□□□□ -1.35
SS18-207ENST00000577636 Q6ZRU5 148 aa6.63□□□□□ -1.35
SS18-207ENST00000577636 ATXN8Q156A1 80 aa6.61□□□□□ -1.35
SS18-207ENST00000577636 S100A7L2Q5SY68 101 aa6.61□□□□□ -1.35
SS18-207ENST00000577636 FAM30AQ9NZY2 134 aa6.61□□□□□ -1.35
SS18-207ENST00000577636 PKIGQ9Y2B9 76 aa6.61□□□□□ -1.35
SS18-207ENST00000577636 UBR4Q5T4S7 5183 aa6.6□□□□□ -1.35
SS18-207ENST00000577636 TRIAP1O43715 76 aa6.6□□□□□ -1.35
SS18-207ENST00000577636 TMEM126AQ9H061 195 aa6.6□□□□□ -1.35
SS18-207ENST00000577636 CBY1Q9Y3M2 126 aa6.6□□□□□ -1.35
SS18-207ENST00000577636 IGKV2-28A0A075B6P5 120 aa6.59□□□□□ -1.35
SS18-207ENST00000577636 F8W1H4 67 aa6.59□□□□□ -1.35
SS18-207ENST00000577636 H3BMG7 143 aa6.59□□□□□ -1.35
SS18-207ENST00000577636 LECT2O14960 151 aa6.59□□□□□ -1.35
SS18-207ENST00000577636 IGKV2D-28P01615 120 aa6.59□□□□□ -1.35
SS18-207ENST00000577636 PLA2G1BP04054 148 aaKnown RBP6.59□□□□□ -1.35
SS18-207ENST00000577636 LCE2AQ5TA79 106 aaPredicted RBP6.59□□□□□ -1.35
SS18-207ENST00000577636 LINC00337Q8N6G1 96 aa6.59□□□□□ -1.35
SS18-207ENST00000577636 TRBV10-2A0A0K0K1G8 114 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 KRTAP29-1A8MX34 341 aaPredicted RBP6.58□□□□□ -1.36
SS18-207ENST00000577636 H0YGX0 51 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 SNCGO76070 127 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 TCL1BO95988 128 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 RPL28P46779 137 aaKnown RBP6.58□□□□□ -1.36
SS18-207ENST00000577636 RPL18AQ02543 176 aaKnown RBP6.58□□□□□ -1.36
SS18-207ENST00000577636 GAGE2EQ4V326 116 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 SERTAD4-AS1Q5TG53 156 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 XAGE1AQ9HD64 81 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 GAGE2DQ9UEU5 116 aa6.58□□□□□ -1.36
SS18-207ENST00000577636 LOC107984640A0A0U1RRK4 108 aa6.57□□□□□ -1.36
SS18-207ENST00000577636 NCR3O14931 201 aa6.57□□□□□ -1.36
SS18-207ENST00000577636 TLX1NBP0CAT3 122 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms