RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 C20orf78Q9BR46 151 aa2.53□□□□□ -2
NUP88-213ENST00000576862 TXNDC17Q9BRA2 123 aa2.53□□□□□ -2
NUP88-213ENST00000576862 TMEM14CQ9P0S9 112 aa2.53□□□□□ -2
NUP88-213ENST00000576862 U3KQK5 164 aa2.53□□□□□ -2
NUP88-213ENST00000576862 MTORP42345 2549 aa2.53□□□□□ -2
NUP88-213ENST00000576862 SONP18583 2426 aaKnown RBP2.53□□□□□ -2
NUP88-213ENST00000576862 ASH1LQ9NR48 2969 aaKnown RBP2.53□□□□□ -2
NUP88-213ENST00000576862 ITPR2Q14571 2701 aa2.53□□□□□ -2
NUP88-213ENST00000576862 FLNAP21333 2647 aaKnown RBP2.53□□□□□ -2.01
NUP88-213ENST00000576862 ARHGAP32A7KAX9 2087 aa2.53□□□□□ -2.01
NUP88-213ENST00000576862 CELSR2Q9HCU4 2923 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 ACANP16112 2415 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 ANKRD17O75179 2603 aaKnown RBP2.52□□□□□ -2.01
NUP88-213ENST00000576862 TRAV2A0A0B4J234 112 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 FAM223BA6NKX1 122 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 ZNF705FA8MVS1 300 aaPredicted RBP2.52□□□□□ -2.01
NUP88-213ENST00000576862 H3BPC8 53 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 H3BUA1 57 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 GNRH2O43555 120 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 PRB4P10163 310 aaPredicted RBP2.52□□□□□ -2.01
NUP88-213ENST00000576862 RPL28P46779 137 aaKnown RBP2.52□□□□□ -2.01
NUP88-213ENST00000576862 ELOBQ15370 118 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 Q1T7F1 81 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 C10orf99Q6UWK7 81 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 FAM223AQ8IWN6 122 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 PPDPFLQ8WWR9 84 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 RETNLBQ9BQ08 111 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 ICOSQ9Y6W8 199 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 HIVEP2P31629 2446 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 DOPEY2Q9Y3R5 2298 aa2.52□□□□□ -2.01
NUP88-213ENST00000576862 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.51□□□□□ -2.015e-8■■■■□ 25.2
NUP88-213ENST00000576862 WNK2Q9Y3S1 2297 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 TRBV7-1A0A0A6YYK4 115 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 TRBV10-2A0A0K0K1G8 114 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 hDV103S1A0JD37 113 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 M0R3E3 92 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 SPANXN1Q5VSR9 72 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 LYZL1Q6UWQ5 148 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 C2orf91Q6ZV80 131 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 OR10AG1Q8NH19 301 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 USMG5Q96IX5 58 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 SPCS1Q9Y6A9 102 aa2.51□□□□□ -2.01
NUP88-213ENST00000576862 PDZD2O15018 2839 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 PLXNB1O43157 2135 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 TRAV7A0A075B6U4 112 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 A0A1W2PPM0 123 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 IGLV1-51P01701 117 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 CCKP06307 115 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 MGST1P10620 155 aaKnown RBP2.5□□□□□ -2.01
NUP88-213ENST00000576862 HINT1P49773 126 aaPredicted RBP2.5□□□□□ -2.01
NUP88-213ENST00000576862 ROMO1P60602 79 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 PDE6HQ13956 83 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 ESRGQ1W209 222 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 BVES-AS1Q5T3Y7 98 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 LINC00322Q6ZN03 302 aaPredicted RBP2.5□□□□□ -2.01
NUP88-213ENST00000576862 TMEM136Q6ZRR5 245 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 Q86TA4 180 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 BAGE2Q86Y30 109 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 Q8N814 137 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 LINC00304Q8N9R0 145 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 LINC01600Q96MT4 127 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 MRPL35Q9NZE8 188 aaKnown RBP2.5□□□□□ -2.01
NUP88-213ENST00000576862 V9GYV3 84 aa2.5□□□□□ -2.01
NUP88-213ENST00000576862 SETD2Q9BYW2 2564 aaPredicted RBP2.5□□□□□ -2.01
NUP88-213ENST00000576862 CRYBG3Q68DQ2 2970 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 CSMD1Q96PZ7 3565 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 IGKV2-40A0A087WW87 121 aaPredicted RBP2.49□□□□□ -2.01
NUP88-213ENST00000576862 TRBV6-1A0A0K0K1D8 114 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 NDUFA4O00483 81 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 NDUFC1O43677 76 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 IGKV2D-40P01614 121 aaPredicted RBP2.49□□□□□ -2.01
NUP88-213ENST00000576862 IGHV3-53P01767 116 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 UBE2G1P62253 170 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 KRTAP13-1Q8IUC0 172 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 SERP2Q8N6R1 65 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 CMTM2Q8TAZ6 248 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 DYNLRB2Q8TF09 96 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 SMR3AQ99954 134 aa2.49□□□□□ -2.01
NUP88-213ENST00000576862 DOCK11Q5JSL3 2073 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 MXRA5Q9NR99 2828 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 OTOGQ6ZRI0 2925 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 A0A087WSZ3 146 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 A0A0B4J2C4 111 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 SMIM27A0A1W2PRY6 76 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 hADV29S1A0JD25 119 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 H7C2G1 150 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 IGKV4-1P06312 121 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 CRIP1P50238 77 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 GDF5OSQ5U4N7 250 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 Q6ZQT0 140 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 C1orf64Q8NEQ6 169 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 Q8TAT8 98 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 TMEM141Q96I45 108 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 RHPN1-AS1Q9BWJ2 59 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 C14orf132Q9NPU4 83 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 CSMD2Q7Z408 3487 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
NUP88-213ENST00000576862 TEX15Q9BXT5 2789 aa2.47□□□□□ -2.01
NUP88-213ENST00000576862 H3BQ85 93 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms