RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 SMIM13P0DJ93 91 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 HBBP68871 147 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 TMEM136Q6ZRR5 245 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 CHCHD7Q9BUK0 85 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 CSMD3Q7Z407 3707 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 HYDINQ4G0P3 5121 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 GAS8-AS1O95177 125 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 UBE2AP49459 152 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 PHF5AQ7RTV0 110 aaKnown RBP4.6□□□□□ -1.67
VPS53-217ENST00000575100 CEND1Q8N111 149 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 TMEM263Q8WUH6 116 aaKnown RBP4.6□□□□□ -1.67
VPS53-217ENST00000575100 PHLDA3Q9Y5J5 127 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 F2Z2F3 143 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 TMEM256-PLSCR3K7ERE1 68 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 HLA-DQA1P01909 254 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 APCSP02743 223 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 SPANXN1Q5VSR9 72 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 DAND5Q8N907 189 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 Q8NAQ8 132 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 NOP10Q9NPE3 64 aaKnown RBP4.59□□□□□ -1.67
VPS53-217ENST00000575100 CELA1Q9UNI1 258 aa4.59□□□□□ -1.67
VPS53-217ENST00000575100 LINC01554Q52M75 96 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 Q6ZTI0 123 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 C14orf178Q8N769 122 aaPredicted RBP4.58□□□□□ -1.68
VPS53-217ENST00000575100 C15orf53Q8NAA6 179 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 C3orf79P0CE67 100 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 LINC00315P59091 139 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 NANOS2P60321 138 aaKnown RBP4.58□□□□□ -1.68
VPS53-217ENST00000575100 MRPS36P82909 103 aaKnown RBP4.58□□□□□ -1.68
VPS53-217ENST00000575100 SS18Q15532 418 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 CFAP126Q5VTH2 177 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 KRTAP4-5Q9BYR2 181 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 KIF25-AS1Q9Y6Z4 181 aa4.58□□□□□ -1.68
VPS53-217ENST00000575100 TRGV1A0A0A0MS02 117 aa4.57□□□□□ -1.68
VPS53-217ENST00000575100 K7ERJ3 54 aa4.57□□□□□ -1.68
VPS53-217ENST00000575100 TLX1NBP0CAT3 122 aa4.57□□□□□ -1.68
VPS53-217ENST00000575100 C16orf74Q96GX8 76 aa4.57□□□□□ -1.68
VPS53-217ENST00000575100 IGHV3-73A0A0B4J1V6 119 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 Q1RN00 199 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 FAM74A4Q5TZK3 123 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 TRAPPC1Q9Y5R8 145 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 ATOX1O00244 68 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 MRPL51Q4U2R6 128 aaKnown RBP4.56□□□□□ -1.68
VPS53-217ENST00000575100 FAM104BQ5XKR9 115 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 NTM-AS1Q6ZSK4 140 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 C2orf91Q6ZV80 131 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 LINC00588Q9Y4M8 146 aa4.56□□□□□ -1.68
VPS53-217ENST00000575100 NACAE9PAV3 2078 aa4.55□□□□□ -1.68
VPS53-217ENST00000575100 IGHV3-53P01767 116 aa4.55□□□□□ -1.68
VPS53-217ENST00000575100 DEFB130BP0DP73 79 aa4.55□□□□□ -1.68
VPS53-217ENST00000575100 DEFB130AP0DP74 79 aa4.55□□□□□ -1.68
VPS53-217ENST00000575100 MIFP14174 115 aa4.55□□□□□ -1.68
VPS53-217ENST00000575100 UPK3BQ9BT76 320 aa4.55□□□□□ -1.68
VPS53-217ENST00000575100 D6R8Y8 96 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 MGPP08493 103 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 COX8AP10176 69 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 LINC00612Q8N6U2 182 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 HERC2O95714 4834 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 A0A0J9YWU9 116 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 TSPEAR-AS2P59090 65 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 UBE2BP63146 152 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 ADM2Q7Z4H4 148 aa4.54□□□□□ -1.68
VPS53-217ENST00000575100 RPL39LQ96EH5 51 aaKnown RBP4.54□□□□□ -1.68
VPS53-217ENST00000575100 TRGV2A0A075B6R0 118 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 NPYP01303 97 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 BAGE3Q86Y29 109 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 CIRBP-AS1Q8TBR5 109 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 DEFB104AQ8WTQ1 72 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 OPRPNQ99935 248 aaPredicted RBP4.53□□□□□ -1.68
VPS53-217ENST00000575100 M0QY20 66 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 TIMM17BO60830 172 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 HBDP02042 147 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 CKS2P33552 79 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 ZNF56Q15929 161 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 HIGD1BQ9P298 99 aa4.53□□□□□ -1.68
VPS53-217ENST00000575100 LEPROTO15243 131 aa4.52□□□□□ -1.69
VPS53-217ENST00000575100 IGHV3-30-3P0DP02 117 aa4.52□□□□□ -1.69
VPS53-217ENST00000575100 NXT2Q9NPJ8 142 aaKnown RBP4.52□□□□□ -1.69
VPS53-217ENST00000575100 SPART-AS1P0CW21 52 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 Q6ZTC4 211 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 CYSTM1Q9H1C7 97 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 DNAH10Q8IVF4 4471 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 KRTAP19-4Q3LI73 84 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 ZFP2Q6ZN57 461 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 SERP2Q8N6R1 65 aa4.51□□□□□ -1.69
VPS53-217ENST00000575100 IGLV2-18A0A075B6J9 118 aa4.5□□□□□ -1.69
VPS53-217ENST00000575100 K7ERS5 55 aa4.5□□□□□ -1.69
VPS53-217ENST00000575100 IFI27P40305 119 aaPredicted RBP4.5□□□□□ -1.69
VPS53-217ENST00000575100 HIST1H4AP62805 103 aaKnown RBP4.5□□□□□ -1.69
VPS53-217ENST00000575100 SYCNQ0VAF6 134 aa4.5□□□□□ -1.69
VPS53-217ENST00000575100 HTN3P15516 51 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 C5orf38Q86SI9 138 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 XAGE1AQ9HD64 81 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 TRGV4A0A0C4DH28 118 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 A0A0J9YY99 117 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 NUPR2A6NF83 97 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 A8MWP4 228 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 C7orf65Q6ZTY9 151 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 Q8N8P6 123 aa4.49□□□□□ -1.69
VPS53-217ENST00000575100 LINC01600Q96MT4 127 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms