RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 FAM19A1Q7Z5A9 133 aa10.49□□□□□ -0.73
CHD3-214ENST00000572579 PLEKHB2Q96CS7 222 aa10.49□□□□□ -0.73
CHD3-214ENST00000572579 RETNLBQ9BQ08 111 aa10.49□□□□□ -0.73
CHD3-214ENST00000572579 CHTOPQ9Y3Y2 248 aaKnown RBP10.49□□□□□ -0.73
CHD3-214ENST00000572579 TMEM223A0PJW6 202 aa10.48□□□□□ -0.73
CHD3-214ENST00000572579 A0A0U1RRA0 63 aa10.47□□□□□ -0.73
CHD3-214ENST00000572579 RPL24P83731 157 aaKnown RBP10.47□□□□□ -0.73
CHD3-214ENST00000572579 C3orf22Q8N5N4 141 aa10.46□□□□□ -0.73
CHD3-214ENST00000572579 LINC00304Q8N9R0 145 aa10.46□□□□□ -0.73
CHD3-214ENST00000572579 LINC00158P58513 81 aa10.45□□□□□ -0.74
CHD3-214ENST00000572579 TRAV12-1A0A0B4J245 112 aa10.44□□□□□ -0.74
CHD3-214ENST00000572579 IFI27L1Q96BM0 104 aa10.44□□□□□ -0.74
CHD3-214ENST00000572579 SNAPINO95295 136 aa10.43□□□□□ -0.74
CHD3-214ENST00000572579 SVBPQ8N300 66 aa10.43□□□□□ -0.74
CHD3-214ENST00000572579 IGKV2D-26A0A0A0MRZ7 120 aa10.42□□□□□ -0.74
CHD3-214ENST00000572579 SMIM13P0DJ93 91 aa10.42□□□□□ -0.74
CHD3-214ENST00000572579 SFTA2Q6UW10 78 aa10.42□□□□□ -0.74
CHD3-214ENST00000572579 CBLN2Q8IUK8 224 aa10.42□□□□□ -0.74
CHD3-214ENST00000572579 CHCHD1Q96BP2 118 aaKnown RBP10.42□□□□□ -0.74
CHD3-214ENST00000572579 FAM19A2Q8N3H0 131 aa10.41□□□□□ -0.74
CHD3-214ENST00000572579 SPRR4Q96PI1 79 aa10.39□□□□□ -0.75
CHD3-214ENST00000572579 HIGD2AQ9BW72 106 aa10.39□□□□□ -0.75
CHD3-214ENST00000572579 LINC00310P59036 64 aa10.38□□□□□ -0.75
CHD3-214ENST00000572579 KRTAP4-16G5E9R7 235 aaPredicted RBP10.37□□□□□ -0.75
CHD3-214ENST00000572579 SPRR1AP35321 89 aa10.37□□□□□ -0.75
CHD3-214ENST00000572579 TSPEAR-AS2P59090 65 aa10.37□□□□□ -0.75
CHD3-214ENST00000572579 MIR7-3HGQ8N6C7 128 aa10.37□□□□□ -0.75
CHD3-214ENST00000572579 BOD1L2Q8IYS8 172 aa10.36□□□□□ -0.75
CHD3-214ENST00000572579 IGLV7-46A0A075B6I9 117 aa10.35□□□□□ -0.75
CHD3-214ENST00000572579 NCR3O14931 201 aa10.35□□□□□ -0.75
CHD3-214ENST00000572579 NDUFA5Q16718 116 aa10.35□□□□□ -0.75
CHD3-214ENST00000572579 KCNQ1DNQ9H478 68 aa10.35□□□□□ -0.75
CHD3-214ENST00000572579 TPRXLQ17RH7 258 aa10.33□□□□□ -0.76
CHD3-214ENST00000572579 LCE2AQ5TA79 106 aaPredicted RBP10.33□□□□□ -0.76
CHD3-214ENST00000572579 NDUFA12Q9UI09 145 aa10.33□□□□□ -0.76
CHD3-214ENST00000572579 TRBV10-3A0A0K0K1G6 114 aa10.32□□□□□ -0.76
CHD3-214ENST00000572579 PRYO14603 147 aa10.32□□□□□ -0.76
CHD3-214ENST00000572579 TRGC2P03986 189 aa10.32□□□□□ -0.76
CHD3-214ENST00000572579 CTAG1AP78358 180 aa10.32□□□□□ -0.76
CHD3-214ENST00000572579 MEIG1Q5JSS6 88 aa10.32□□□□□ -0.76
CHD3-214ENST00000572579 SMCR5Q8TEV8 140 aa10.32□□□□□ -0.76
CHD3-214ENST00000572579 HSBP1O75506 76 aa10.31□□□□□ -0.76
CHD3-214ENST00000572579 HERV-K104P63124 156 aa10.31□□□□□ -0.76
CHD3-214ENST00000572579 LINC00337Q8N6G1 96 aa10.31□□□□□ -0.76
CHD3-214ENST00000572579 DAND5Q8N907 189 aa10.31□□□□□ -0.76
CHD3-214ENST00000572579 H0Y8G0 127 aa10.3□□□□□ -0.76
CHD3-214ENST00000572579 PPDPFQ9H3Y8 114 aa10.3□□□□□ -0.76
CHD3-214ENST00000572579 LOC107984156A0A0G2JMH3 177 aa10.29□□□□□ -0.76
CHD3-214ENST00000572579 ATP6V1G1O75348 118 aa10.29□□□□□ -0.76
CHD3-214ENST00000572579 SERF1AO75920 110 aa10.29□□□□□ -0.76
CHD3-214ENST00000572579 ERC2-IT1O76042 136 aa10.29□□□□□ -0.76
CHD3-214ENST00000572579 ARL17AQ8IVW1 177 aa10.29□□□□□ -0.76
CHD3-214ENST00000572579 MYMXA0A1B0GTQ4 84 aa10.28□□□□□ -0.76
CHD3-214ENST00000572579 CDIP1Q9H305 208 aa10.28□□□□□ -0.76
CHD3-214ENST00000572579 LEPROTO15243 131 aa10.27□□□□□ -0.77
CHD3-214ENST00000572579 Q8NBF4 154 aa10.27□□□□□ -0.77
CHD3-214ENST00000572579 PMCHL2Q9BQD1 86 aa10.27□□□□□ -0.77
CHD3-214ENST00000572579 B5MCH6 92 aa10.26□□□□□ -0.77
CHD3-214ENST00000572579 EIF4EBP3O60516 100 aaPredicted RBP10.26□□□□□ -0.77
CHD3-214ENST00000572579 LINC00483Q53H64 154 aa10.26□□□□□ -0.77
CHD3-214ENST00000572579 SPAG11AQ6PDA7 123 aa10.26□□□□□ -0.77
CHD3-214ENST00000572579 LEPROTL1O95214 131 aa10.25□□□□□ -0.77
CHD3-214ENST00000572579 LINC00587B1AMM8 73 aa10.24□□□□□ -0.77
CHD3-214ENST00000572579 Q9BRP9 147 aa10.24□□□□□ -0.77
CHD3-214ENST00000572579 ZNF706Q9Y5V0 76 aaPredicted RBP10.24□□□□□ -0.77
CHD3-214ENST00000572579 ETDCA0A1B0GVM5 59 aa10.23□□□□□ -0.77
CHD3-214ENST00000572579 J3QQQ9 107 aa10.23□□□□□ -0.77
CHD3-214ENST00000572579 FABP4P15090 132 aa10.23□□□□□ -0.77
CHD3-214ENST00000572579 A0A0U1RQV1 116 aa10.22□□□□□ -0.77
CHD3-214ENST00000572579 COLCA2A8K830 154 aa10.22□□□□□ -0.77
CHD3-214ENST00000572579 GAGE2AQ6NT46 116 aa10.22□□□□□ -0.77
CHD3-214ENST00000572579 SOSTDC1Q6X4U4 206 aa10.22□□□□□ -0.77
CHD3-214ENST00000572579 MAP1LC3CQ9BXW4 147 aa10.22□□□□□ -0.77
CHD3-214ENST00000572579 KRTAP13-3Q3SY46 172 aa10.21□□□□□ -0.77
CHD3-214ENST00000572579 ADAMTSL4-AS1Q5T5F5 129 aa10.21□□□□□ -0.77
CHD3-214ENST00000572579 TRBV10-2A0A0K0K1G8 114 aa10.2□□□□□ -0.78
CHD3-214ENST00000572579 PLNP26678 52 aa10.2□□□□□ -0.78
CHD3-214ENST00000572579 DDTP30046 118 aa10.2□□□□□ -0.78
CHD3-214ENST00000572579 SLC7A5P1Q8MH63 180 aa10.2□□□□□ -0.78
CHD3-214ENST00000572579 DPM2O94777 84 aa10.19□□□□□ -0.78
CHD3-214ENST00000572579 IGLV6-57P01721 117 aa10.19□□□□□ -0.78
CHD3-214ENST00000572579 FP248Q71RG6 208 aaPredicted RBP10.19□□□□□ -0.78
CHD3-214ENST00000572579 KRTAP9-2Q9BYQ4 174 aa10.19□□□□□ -0.78
CHD3-214ENST00000572579 C4orf48Q5BLP8 95 aa10.18□□□□□ -0.78
CHD3-214ENST00000572579 HSPB8Q9UJY1 196 aa10.18□□□□□ -0.78
CHD3-214ENST00000572579 IGKCP01834 107 aa10.17□□□□□ -0.78
CHD3-214ENST00000572579 KRTAP4-1Q9BYQ7 146 aa10.17□□□□□ -0.78
CHD3-214ENST00000572579 SPINK1P00995 79 aa10.16□□□□□ -0.78
CHD3-214ENST00000572579 MOBPQ13875 183 aa10.16□□□□□ -0.78
CHD3-214ENST00000572579 Q6ZRX8 168 aa10.16□□□□□ -0.78
CHD3-214ENST00000572579 SPANXB1Q9NS25 103 aaPredicted RBP10.16□□□□□ -0.78
CHD3-214ENST00000572579 IGLV9-49A0A0B4J1Y8 123 aa10.15□□□□□ -0.78
CHD3-214ENST00000572579 A0A0J9YXY3 114 aa10.15□□□□□ -0.78
CHD3-214ENST00000572579 NDUFC2O95298 119 aa10.15□□□□□ -0.78
CHD3-214ENST00000572579 NMUP48645 174 aa10.15□□□□□ -0.78
CHD3-214ENST00000572579 LGALS3P17931 250 aaKnown RBP10.14□□□□□ -0.79
CHD3-214ENST00000572579 NPC2P61916 151 aa10.14□□□□□ -0.79
CHD3-214ENST00000572579 SSBP3-AS1Q7Z2R9 100 aa10.13□□□□□ -0.79
CHD3-214ENST00000572579 Q8N377 158 aa10.13□□□□□ -0.79
CHD3-214ENST00000572579 HERVK_113P61574 105 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms