RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 GAGE2AQ6NT46 116 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 ENHOQ6UWT2 76 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 DEFB104AQ8WTQ1 72 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 CARD19Q96LW7 228 aa4.36□□□□□ -1.71
VPS53-213ENST00000572334 IGKV2D-24A0A075B6R9 120 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 TMSB15BA0A087X1C1 80 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 NDUFC2-KCTD14E9PQ53 114 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 M0R381 172 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 TCL1BO95988 128 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 IGLC6P0CF74 106 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 CRYGAP11844 174 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 LGALS3P17931 250 aaKnown RBP4.35□□□□□ -1.71
VPS53-213ENST00000572334 KRTAP26-1Q6PEX3 210 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 C2orf82Q6UX34 121 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 NEXN-AS1Q8NBZ9 246 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 TOMM6Q96B49 74 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 KIR2DL4Q99706 377 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 CHCHD7Q9BUK0 85 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 UBR4Q5T4S7 5183 aa4.35□□□□□ -1.71
VPS53-213ENST00000572334 TRBV10-1A0A0K0K1A3 114 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 C11orf86A6NJI1 115 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 PANO1I0J062 215 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 COX7CP15954 63 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 NTM-AS1Q6ZSK4 140 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 PLEKHB2Q96CS7 222 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 PHLDA3Q9Y5J5 127 aa4.34□□□□□ -1.71
VPS53-213ENST00000572334 TRBV6-8A0A0A6YYG3 113 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 KRTAP4-8A0A0G2JLE6 195 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 SDHAF1A6NFY7 115 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 RPL36AP83881 106 aaKnown RBP4.33□□□□□ -1.72
VPS53-213ENST00000572334 ZNF56Q15929 161 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 RPL36ALQ969Q0 106 aaKnown RBP4.33□□□□□ -1.72
VPS53-213ENST00000572334 RMI2Q96E14 147 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 SMIM2Q9BVW6 85 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 KIF25-AS1Q9Y6Z4 181 aa4.33□□□□□ -1.72
VPS53-213ENST00000572334 A4D1N5 150 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 USP17L23D6RBM5 183 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 OXTP01178 125 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 MT1HL1P0DM35 61 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 HERVK_113P63121 156 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 S100A7L2Q5SY68 101 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 SPANXN1Q5VSR9 72 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 PPDPFQ9H3Y8 114 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 PRR34Q9NV39 138 aa4.32□□□□□ -1.72
VPS53-213ENST00000572334 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.32□□□□□ -1.72
VPS53-213ENST00000572334 FAM236AA0A1B0GUQ0 79 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 FAM236BA0A1B0GV22 79 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 F8WDY8 70 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 LEPROTO15243 131 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 NDUFC2O95298 119 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 SUMO2P61956 95 aaKnown RBP4.31□□□□□ -1.72
VPS53-213ENST00000572334 SERTAD4-AS1Q5TG53 156 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 FAM19A5Q7Z5A7 132 aaPredicted RBP4.31□□□□□ -1.72
VPS53-213ENST00000572334 C9orf163Q8N9P6 203 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 RNF185Q96GF1 192 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 TIMM17AQ99595 171 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 C1orf43Q9BWL3 253 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 DPH3P1Q9H4G8 78 aa4.31□□□□□ -1.72
VPS53-213ENST00000572334 ANGP03950 147 aaKnown RBP4.3□□□□□ -1.72
VPS53-213ENST00000572334 SLPIP03973 132 aa4.3□□□□□ -1.72
VPS53-213ENST00000572334 MRPS36P82909 103 aaKnown RBP4.3□□□□□ -1.72
VPS53-213ENST00000572334 CIRBPQ14011 172 aaKnown RBP4.3□□□□□ -1.72
VPS53-213ENST00000572334 MIAQ16674 131 aa4.3□□□□□ -1.72
VPS53-213ENST00000572334 SDIM1Q6ZPB5 146 aa4.3□□□□□ -1.72
VPS53-213ENST00000572334 DAND5Q8N907 189 aa4.3□□□□□ -1.72
VPS53-213ENST00000572334 A0A0J9YXY3 114 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 J3QQQ9 107 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 M0QY20 66 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 BCE1O60756 84 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 RPL37AP61513 92 aaKnown RBP4.29□□□□□ -1.72
VPS53-213ENST00000572334 C14orf177Q52M58 125 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 DGAT2L7PQ6IED9 249 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 CLPSL2Q6UWE3 100 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 C2orf66Q6UXQ4 117 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 C20orf203Q8NBC4 194 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 CHCHD5Q9BSY4 110 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 LAMTOR3Q9UHA4 124 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 PRO0628Q9UI54 55 aa4.29□□□□□ -1.72
VPS53-213ENST00000572334 IGLV4-60A0A075B6I1 120 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 SMKR1H3BMG3 65 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 LST1O00453 97 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 VCYO14598 125 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 TIMM17BO60830 172 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 CRPP02741 224 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 MALP21145 153 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 ATP5EP2Q5VTU8 51 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 LINC00269Q8N2A0 174 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 SERP2Q8N6R1 65 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 NRACQ8N912 160 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 TTTY13Q9BZ97 58 aa4.28□□□□□ -1.72
VPS53-213ENST00000572334 LRP2P98164 4655 aa4.27□□□□□ -1.73
VPS53-213ENST00000572334 IGLV10-54A0A075B6I4 117 aa4.27□□□□□ -1.73
VPS53-213ENST00000572334 TRAV13-1A0A0B4J241 112 aa4.27□□□□□ -1.73
VPS53-213ENST00000572334 TEX49A0A1B0GTD5 131 aa4.27□□□□□ -1.73
VPS53-213ENST00000572334 ATP5EP56381 51 aaPredicted RBP4.27□□□□□ -1.73
VPS53-213ENST00000572334 CNBPP62633 177 aaKnown RBP4.27□□□□□ -1.73
VPS53-213ENST00000572334 SUMO4Q6EEV6 95 aa4.27□□□□□ -1.73
VPS53-213ENST00000572334 PLA2G2DQ9UNK4 145 aa4.27□□□□□ -1.73
VPS53-213ENST00000572334 A0A1B0GUV1 79 aa4.26□□□□□ -1.73
VPS53-213ENST00000572334 F5H697 171 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms