RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 EIF4EBP3O60516 100 aaPredicted RBP10.47□□□□□ -0.73
CIITA-204ENST00000570546 BCE1O60756 84 aa10.47□□□□□ -0.73
CIITA-204ENST00000570546 DOPEY1Q5JWR5 2465 aa10.47□□□□□ -0.73
CIITA-204ENST00000570546 SMIM29Q86T20 159 aa10.47□□□□□ -0.73
CIITA-204ENST00000570546 LINC00167Q96N53 147 aa10.46□□□□□ -0.73
CIITA-204ENST00000570546 ABCA12Q86UK0 2595 aa10.45□□□□□ -0.74
CIITA-204ENST00000570546 Q8NAQ8 132 aa10.45□□□□□ -0.74
CIITA-204ENST00000570546 CIRBP-AS1Q8TBR5 109 aa10.44□□□□□ -0.74
CIITA-204ENST00000570546 TLN2Q9Y4G6 2542 aa10.44□□□□□ -0.74
CIITA-204ENST00000570546 CSNK1G2-AS1Q8NCQ2 148 aa10.43□□□□□ -0.74
CIITA-204ENST00000570546 PCOTHQ58A44 107 aa10.43□□□□□ -0.74
CIITA-204ENST00000570546 CHD7Q9P2D1 2997 aa10.42□□□□□ -0.74
CIITA-204ENST00000570546 IGLV5-52A0A0A0MRZ9 124 aa10.42□□□□□ -0.74
CIITA-204ENST00000570546 USP9YO00507 2555 aaPredicted RBP10.42□□□□□ -0.74
CIITA-204ENST00000570546 C5orf42Q9H799 3197 aa10.41□□□□□ -0.74
CIITA-204ENST00000570546 PSPHP1O15172 72 aa10.41□□□□□ -0.74
CIITA-204ENST00000570546 GVQW2A0A096LPI5 108 aaPredicted RBP10.4□□□□□ -0.74
CIITA-204ENST00000570546 RPS28P62857 69 aaKnown RBP10.39□□□□□ -0.75
CIITA-204ENST00000570546 IGLV6-57P01721 117 aa10.39□□□□□ -0.75
CIITA-204ENST00000570546 A0A096LNT2 108 aa10.39□□□□□ -0.75
CIITA-204ENST00000570546 Q6ZRX8 168 aa10.39□□□□□ -0.75
CIITA-204ENST00000570546 MUC4Q99102 2169 aa10.39□□□□□ -0.75
CIITA-204ENST00000570546 FN1P02751 2386 aaKnown RBP10.38□□□□□ -0.75
CIITA-204ENST00000570546 hDV103S1A0JD37 113 aa10.38□□□□□ -0.75
CIITA-204ENST00000570546 A0A1B0GW54 56 aa10.38□□□□□ -0.75
CIITA-204ENST00000570546 ZNF575Q86XF7 245 aa10.37□□□□□ -0.75
CIITA-204ENST00000570546 C1orf64Q8NEQ6 169 aa10.35□□□□□ -0.75
CIITA-204ENST00000570546 CHD8Q9HCK8 2581 aa10.35□□□□□ -0.75
CIITA-204ENST00000570546 VPREB1P12018 145 aa10.34□□□□□ -0.75
CIITA-204ENST00000570546 GIG44P09565 113 aaPredicted RBP10.34□□□□□ -0.75
CIITA-204ENST00000570546 Q8NBF4 154 aa10.34□□□□□ -0.75
CIITA-204ENST00000570546 TM2D3Q9BRN9 247 aa10.34□□□□□ -0.75
CIITA-204ENST00000570546 Q6ZRP5 223 aa10.34□□□□□ -0.75
CIITA-204ENST00000570546 ST20-AS1Q8NBB2 130 aa10.33□□□□□ -0.76
CIITA-204ENST00000570546 HTTP42858 3142 aa10.33□□□□□ -0.76
CIITA-204ENST00000570546 SETD2Q9BYW2 2564 aaPredicted RBP10.33□□□□□ -0.76
CIITA-204ENST00000570546 PMAIP1Q13794 54 aa10.32□□□□□ -0.76
CIITA-204ENST00000570546 C4orf26Q17RF5 130 aa10.32□□□□□ -0.76
CIITA-204ENST00000570546 LINC00476Q8WZB0 136 aa10.32□□□□□ -0.76
CIITA-204ENST00000570546 RETNLBQ9BQ08 111 aa10.32□□□□□ -0.76
CIITA-204ENST00000570546 ZNF462Q96JM2 2506 aa10.32□□□□□ -0.76
CIITA-204ENST00000570546 K7ERS5 55 aa10.31□□□□□ -0.76
CIITA-204ENST00000570546 NHLRC4P0CG21 123 aaPredicted RBP10.31□□□□□ -0.76
CIITA-204ENST00000570546 C1orf134Q5TEV5 83 aa10.31□□□□□ -0.76
CIITA-204ENST00000570546 SPTBN4Q9H254 2564 aa10.3□□□□□ -0.76
CIITA-204ENST00000570546 LRRK2Q5S007 2527 aa10.3□□□□□ -0.76
CIITA-204ENST00000570546 LINC00588Q9Y4M8 146 aa10.3□□□□□ -0.76
CIITA-204ENST00000570546 ANKRD17O75179 2603 aaKnown RBP10.3□□□□□ -0.76
CIITA-204ENST00000570546 C19orf73Q9NVV2 129 aa10.3□□□□□ -0.76
CIITA-204ENST00000570546 JMJD1CQ15652 2540 aa10.28□□□□□ -0.76
CIITA-204ENST00000570546 CHD9Q3L8U1 2897 aa10.28□□□□□ -0.76
CIITA-204ENST00000570546 PHF5AQ7RTV0 110 aaKnown RBP10.27□□□□□ -0.76
CIITA-204ENST00000570546 MDFIQ99750 246 aa10.27□□□□□ -0.77
CIITA-204ENST00000570546 PRO0628Q9UI54 55 aa10.27□□□□□ -0.77
CIITA-204ENST00000570546 PRRC2CQ9Y520 2896 aaKnown RBP10.27□□□□□ -0.77
CIITA-204ENST00000570546 KRTAP24-1Q3LI83 254 aa10.26□□□□□ -0.77
CIITA-204ENST00000570546 POLQO75417 2590 aa10.26□□□□□ -0.77
CIITA-204ENST00000570546 C16orf90A8MZG2 172 aa10.25□□□□□ -0.77
CIITA-204ENST00000570546 LINC00612Q8N6U2 182 aa10.25□□□□□ -0.77
CIITA-204ENST00000570546 FAM168BA1KXE4 195 aa10.25□□□□□ -0.77
CIITA-204ENST00000570546 SERTAD4-AS1Q5TG53 156 aa10.25□□□□□ -0.77
CIITA-204ENST00000570546 DNAH10OSP0CZ25 163 aa10.25□□□□□ -0.77
CIITA-204ENST00000570546 PRR34Q9NV39 138 aa10.24□□□□□ -0.77
CIITA-204ENST00000570546 EPM2AB3EWF7 344 aa10.24□□□□□ -0.77
CIITA-204ENST00000570546 MOBPQ13875 183 aa10.23□□□□□ -0.77
CIITA-204ENST00000570546 LINC00528Q8N1L1 170 aa10.23□□□□□ -0.77
CIITA-204ENST00000570546 TP53AIP1Q9HCN2 124 aa10.23□□□□□ -0.77
CIITA-204ENST00000570546 ZFYVE26Q68DK2 2539 aa10.22□□□□□ -0.77
CIITA-204ENST00000570546 LIMD2Q9BT23 127 aa10.22□□□□□ -0.77
CIITA-204ENST00000570546 KCNQ1DNQ9H478 68 aa10.22□□□□□ -0.77
CIITA-204ENST00000570546 TRBV7-4A0A0J9YYF1 115 aa10.21□□□□□ -0.77
CIITA-204ENST00000570546 KRTAP10-3P60369 221 aa10.21□□□□□ -0.78
CIITA-204ENST00000570546 RPL37AP61513 92 aaKnown RBP10.2□□□□□ -0.78
CIITA-204ENST00000570546 IGLV1-50A0A075B6I6 118 aa10.2□□□□□ -0.78
CIITA-204ENST00000570546 C9orf129Q5T035 196 aaKnown RBP10.2□□□□□ -0.78
CIITA-204ENST00000570546 C15orf56Q8N910 161 aa10.19□□□□□ -0.78
CIITA-204ENST00000570546 PKD1L2Q7Z442 2459 aa10.19□□□□□ -0.78
CIITA-204ENST00000570546 H3BPC8 53 aa10.19□□□□□ -0.78
CIITA-204ENST00000570546 ERC2-IT1O76042 136 aa10.18□□□□□ -0.78
CIITA-204ENST00000570546 MTORP42345 2549 aa10.16□□□□□ -0.78
CIITA-204ENST00000570546 K7EQZ3 153 aa10.16□□□□□ -0.78
CIITA-204ENST00000570546 CHTF8P0CG12 524 aa10.16□□□□□ -0.78
CIITA-204ENST00000570546 NBDYA0A0U1RRE5 68 aa10.15□□□□□ -0.78
CIITA-204ENST00000570546 SPINK1P00995 79 aa10.15□□□□□ -0.79
CIITA-204ENST00000570546 KRTAP10-11P60412 298 aa10.14□□□□□ -0.79
CIITA-204ENST00000570546 TRAV22A0A0B4J277 110 aa10.14□□□□□ -0.79
CIITA-204ENST00000570546 FAM104AQ969W3 186 aa10.13□□□□□ -0.79
CIITA-204ENST00000570546 LINC01600Q96MT4 127 aa10.13□□□□□ -0.79
CIITA-204ENST00000570546 KRTAP1-3Q8IUG1 177 aa10.12□□□□□ -0.79
CIITA-204ENST00000570546 RTL8CO15255 209 aa10.11□□□□□ -0.79
CIITA-204ENST00000570546 Q8N377 158 aa10.11□□□□□ -0.79
CIITA-204ENST00000570546 IGKV2D-30A0A075B6S6 120 aa10.1□□□□□ -0.79
CIITA-204ENST00000570546 IGKV2-30P06310 120 aa10.1□□□□□ -0.79
CIITA-204ENST00000570546 KLKP1Q107X0 134 aa10.1□□□□□ -0.79
CIITA-204ENST00000570546 A8MWP4 228 aa10.1□□□□□ -0.79
CIITA-204ENST00000570546 IGFL1Q6UW32 110 aa10.09□□□□□ -0.79
CIITA-204ENST00000570546 ACYP2P14621 99 aa10.08□□□□□ -0.8
CIITA-204ENST00000570546 SPAG11AQ6PDA7 123 aa10.08□□□□□ -0.8
CIITA-204ENST00000570546 OBSCN-AS1Q96MR7 158 aa10.08□□□□□ -0.8
CIITA-204ENST00000570546 ACANP16112 2415 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms