RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 X6R8D5 127 aa9.92□□□□□ -0.82
VPS35-210ENST00000568784 KRTAP1-3Q8IUG1 177 aa9.91□□□□□ -0.82
VPS35-210ENST00000568784 DEFB105AQ8NG35 78 aa9.91□□□□□ -0.82
VPS35-210ENST00000568784 TRBV10-3A0A0K0K1G6 114 aa9.91□□□□□ -0.82
VPS35-210ENST00000568784 CELA1Q9UNI1 258 aa9.91□□□□□ -0.82
VPS35-210ENST00000568784 M0R2N4 97 aa9.91□□□□□ -0.82
VPS35-210ENST00000568784 VWFP04275 2813 aa9.9□□□□□ -0.82
VPS35-210ENST00000568784 Q8NDZ9 215 aa9.9□□□□□ -0.82
VPS35-210ENST00000568784 CAMK2N2Q96S95 79 aa9.9□□□□□ -0.82
VPS35-210ENST00000568784 KIAA0087Q14695 138 aa9.9□□□□□ -0.83
VPS35-210ENST00000568784 LINC00575Q6W349 94 aa9.9□□□□□ -0.83
VPS35-210ENST00000568784 TMEM258P61165 79 aa9.89□□□□□ -0.83
VPS35-210ENST00000568784 DIRC1Q969H9 104 aa9.89□□□□□ -0.83
VPS35-210ENST00000568784 LY6G6DO95868 133 aa9.89□□□□□ -0.83
VPS35-210ENST00000568784 SPATA3Q8NHX4 192 aa9.89□□□□□ -0.83
VPS35-210ENST00000568784 SMIM9A6NGZ8 99 aa9.87□□□□□ -0.83
VPS35-210ENST00000568784 SPART-AS1P0CW21 52 aa9.87□□□□□ -0.83
VPS35-210ENST00000568784 APOC4P55056 127 aa9.87□□□□□ -0.83
VPS35-210ENST00000568784 COX17Q14061 63 aa9.87□□□□□ -0.83
VPS35-210ENST00000568784 DPH3Q96FX2 82 aa9.87□□□□□ -0.83
VPS35-210ENST00000568784 LYRM9A8MSI8 78 aa9.86□□□□□ -0.83
VPS35-210ENST00000568784 HRCT1Q6UXD1 115 aa9.86□□□□□ -0.83
VPS35-210ENST00000568784 NDUFC2O95298 119 aa9.86□□□□□ -0.83
VPS35-210ENST00000568784 OBSCN-AS1Q96MR7 158 aa9.86□□□□□ -0.83
VPS35-210ENST00000568784 ZNF469Q96JG9 3925 aaPredicted RBP9.85□□□□□ -0.83
VPS35-210ENST00000568784 HIVEP1P15822 2718 aa9.85□□□□□ -0.83
VPS35-210ENST00000568784 COX7BP24311 80 aa9.85□□□□□ -0.83
VPS35-210ENST00000568784 ATP5EP2Q5VTU8 51 aa9.85□□□□□ -0.83
VPS35-210ENST00000568784 Q6ZVQ6 151 aa9.85□□□□□ -0.83
VPS35-210ENST00000568784 LINC01547P58512 204 aaPredicted RBP9.84□□□□□ -0.83
VPS35-210ENST00000568784 FLNBO75369 2602 aaKnown RBP9.84□□□□□ -0.83
VPS35-210ENST00000568784 Q8N9L7 120 aa9.84□□□□□ -0.83
VPS35-210ENST00000568784 C9orf66Q5T8R8 295 aa9.83□□□□□ -0.84
VPS35-210ENST00000568784 IGKV2D-24A0A075B6R9 120 aa9.83□□□□□ -0.84
VPS35-210ENST00000568784 ZNF73O43830 326 aaPredicted RBP9.82□□□□□ -0.84
VPS35-210ENST00000568784 TRAV10A0A0B4J240 114 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 KRTAP10-3P60369 221 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 C4orf26Q17RF5 130 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 NBPF19A0A087WUL8 3843 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 NOTCH1P46531 2555 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 FAM236DA0A1B0GTK5 79 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 C3orf84H3BNL1 204 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 FAM236CP0DP71 79 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 Q6ZQT0 140 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 C16orf95Q9H693 158 aa9.82□□□□□ -0.84
VPS35-210ENST00000568784 RMI2Q96E14 147 aa9.81□□□□□ -0.84
VPS35-210ENST00000568784 LELP1Q5T871 98 aa9.8□□□□□ -0.84
VPS35-210ENST00000568784 C5orf47Q569G3 176 aa9.79□□□□□ -0.84
VPS35-210ENST00000568784 RETNQ9HD89 108 aa9.79□□□□□ -0.84
VPS35-210ENST00000568784 C6orf48Q9UBA6 75 aa9.79□□□□□ -0.84
VPS35-210ENST00000568784 WFDC10BQ8IUB3 73 aa9.79□□□□□ -0.84
VPS35-210ENST00000568784 MUC7Q8TAX7 377 aa9.79□□□□□ -0.84
VPS35-210ENST00000568784 INAFM1C9JVW0 142 aa9.79□□□□□ -0.84
VPS35-210ENST00000568784 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.78□□□□□ -0.84
VPS35-210ENST00000568784 F8WEM9 126 aa9.77□□□□□ -0.85
VPS35-210ENST00000568784 NKAPP1Q8N9T2 125 aa9.77□□□□□ -0.85
VPS35-210ENST00000568784 AKAP9Q99996 3911 aa9.76□□□□□ -0.85
VPS35-210ENST00000568784 BAHCC1Q9P281 2608 aa9.76□□□□□ -0.85
VPS35-210ENST00000568784 TENM1Q9UKZ4 2725 aa9.76□□□□□ -0.85
VPS35-210ENST00000568784 KRTAP1-1Q07627 177 aa9.76□□□□□ -0.85
VPS35-210ENST00000568784 NREPQ16612 68 aa9.76□□□□□ -0.85
VPS35-210ENST00000568784 C1orf43Q9BWL3 253 aa9.76□□□□□ -0.85
VPS35-210ENST00000568784 LINC00612Q8N6U2 182 aa9.75□□□□□ -0.85
VPS35-210ENST00000568784 IGHV4-30-4P0DP06 118 aa9.75□□□□□ -0.85
VPS35-210ENST00000568784 LINC00167Q96N53 147 aa9.75□□□□□ -0.85
VPS35-210ENST00000568784 MAST4O15021 2626 aa9.75□□□□□ -0.85
VPS35-210ENST00000568784 Q6ZRU5 148 aa9.74□□□□□ -0.85
VPS35-210ENST00000568784 TRAV7A0A075B6U4 112 aa9.74□□□□□ -0.85
VPS35-210ENST00000568784 OXTP01178 125 aa9.74□□□□□ -0.85
VPS35-210ENST00000568784 MIFP14174 115 aa9.73□□□□□ -0.85
VPS35-210ENST00000568784 KPRPQ5T749 579 aaPredicted RBP9.73□□□□□ -0.85
VPS35-210ENST00000568784 TM2D3Q9BRN9 247 aa9.73□□□□□ -0.85
VPS35-210ENST00000568784 LYPD5Q6UWN5 251 aa9.72□□□□□ -0.85
VPS35-210ENST00000568784 IGLV6-57P01721 117 aa9.72□□□□□ -0.85
VPS35-210ENST00000568784 PDE6GP18545 87 aa9.72□□□□□ -0.85
VPS35-210ENST00000568784 RPS28P62857 69 aaKnown RBP9.72□□□□□ -0.85
VPS35-210ENST00000568784 RPL37AP8A6NKH3 93 aa9.72□□□□□ -0.85
VPS35-210ENST00000568784 STAB1Q9NY15 2570 aa9.71□□□□□ -0.85
VPS35-210ENST00000568784 Q8NAQ8 132 aa9.71□□□□□ -0.86
VPS35-210ENST00000568784 OXLD1Q5BKU9 147 aa9.71□□□□□ -0.86
VPS35-210ENST00000568784 A0A0J9YWU9 116 aa9.7□□□□□ -0.86
VPS35-210ENST00000568784 PRB2P02812 416 aaPredicted RBP9.7□□□□□ -0.86
VPS35-210ENST00000568784 TENM4Q6N022 2769 aa9.7□□□□□ -0.86
VPS35-210ENST00000568784 Q6ZTC4 211 aa9.69□□□□□ -0.86
VPS35-210ENST00000568784 BPY2O14599 106 aa9.69□□□□□ -0.86
VPS35-210ENST00000568784 NBEAL1Q6ZS30 2694 aa9.69□□□□□ -0.86
VPS35-210ENST00000568784 M0R378 163 aa9.68□□□□□ -0.86
VPS35-210ENST00000568784 LOC110117498A0A087WWA1 95 aa9.68□□□□□ -0.86
VPS35-210ENST00000568784 J3QKU1 62 aa9.68□□□□□ -0.86
VPS35-210ENST00000568784 PDZD2O15018 2839 aa9.68□□□□□ -0.86
VPS35-210ENST00000568784 MPLKIPQ8TAP9 179 aa9.67□□□□□ -0.86
VPS35-210ENST00000568784 PKD1L1Q8TDX9 2849 aa9.67□□□□□ -0.86
VPS35-210ENST00000568784 COL6A5A8TX70 2615 aa9.65□□□□□ -0.86
VPS35-210ENST00000568784 SYCNQ0VAF6 134 aa9.65□□□□□ -0.86
VPS35-210ENST00000568784 NSD1Q96L73 2696 aaPredicted RBP9.65□□□□□ -0.86
VPS35-210ENST00000568784 H7BZZ5 65 aa9.65□□□□□ -0.87
VPS35-210ENST00000568784 ELOF1P60002 83 aaKnown RBP9.65□□□□□ -0.87
VPS35-210ENST00000568784 VPREB1P12018 145 aa9.64□□□□□ -0.87
VPS35-210ENST00000568784 EGFEM1PQ0D2K5 195 aa9.64□□□□□ -0.87
VPS35-210ENST00000568784 ETDCA0A1B0GVM5 59 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 777.7 ms