RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 AKAP14Q86UN6 197 aa9.12□□□□□ -0.95
CDH3-205ENST00000566808 Q8NDZ9 215 aa9.12□□□□□ -0.95
CDH3-205ENST00000566808 ALKAL2Q6UX46 152 aa9.11□□□□□ -0.95
CDH3-205ENST00000566808 COX6B2Q6YFQ2 88 aa9.11□□□□□ -0.95
CDH3-205ENST00000566808 G0S2P27469 103 aa9.1□□□□□ -0.95
CDH3-205ENST00000566808 SSBP3-AS1Q7Z2R9 100 aa9.1□□□□□ -0.95
CDH3-205ENST00000566808 NAT8Q9UHE5 227 aa9.1□□□□□ -0.95
CDH3-205ENST00000566808 ERG28Q9UKR5 140 aa9.1□□□□□ -0.95
CDH3-205ENST00000566808 IGLV9-49A0A0B4J1Y8 123 aa9.09□□□□□ -0.95
CDH3-205ENST00000566808 COX17Q14061 63 aa9.09□□□□□ -0.95
CDH3-205ENST00000566808 SMCR5Q8TEV8 140 aa9.08□□□□□ -0.96
CDH3-205ENST00000566808 TOMM6Q96B49 74 aa9.08□□□□□ -0.96
CDH3-205ENST00000566808 NXT2Q9NPJ8 142 aaKnown RBP9.08□□□□□ -0.96
CDH3-205ENST00000566808 PRYO14603 147 aa9.07□□□□□ -0.96
CDH3-205ENST00000566808 MRPL18Q9H0U6 180 aaKnown RBP9.07□□□□□ -0.96
CDH3-205ENST00000566808 FCGBPQ9Y6R7 5405 aaPredicted RBP9.07□□□□□ -0.96
CDH3-205ENST00000566808 GAGE2AQ6NT46 116 aa9.06□□□□□ -0.96
CDH3-205ENST00000566808 ERASQ7Z444 233 aa9.06□□□□□ -0.96
CDH3-205ENST00000566808 TCTE3Q8IZS6 198 aa9.06□□□□□ -0.96
CDH3-205ENST00000566808 H3BRM9 83 aa9.05□□□□□ -0.96
CDH3-205ENST00000566808 SPRR1AP35321 89 aa9.04□□□□□ -0.96
CDH3-205ENST00000566808 IGLV5-39A0A0G2JS06 123 aa9.03□□□□□ -0.96
CDH3-205ENST00000566808 ETDCA0A1B0GVM5 59 aa9.03□□□□□ -0.96
CDH3-205ENST00000566808 SCGB3A1Q96QR1 104 aa9.03□□□□□ -0.96
CDH3-205ENST00000566808 C9orf92A6NGG3 77 aa9.02□□□□□ -0.97
CDH3-205ENST00000566808 KRTAP4-16G5E9R7 235 aaPredicted RBP9.01□□□□□ -0.97
CDH3-205ENST00000566808 CST9LQ9H4G1 147 aa9.01□□□□□ -0.97
CDH3-205ENST00000566808 ADCYAP1P18509 176 aa9□□□□□ -0.97
CDH3-205ENST00000566808 KCNQ1DNQ9H478 68 aa9□□□□□ -0.97
CDH3-205ENST00000566808 CFC1P0CG37 223 aa8.99□□□□□ -0.97
CDH3-205ENST00000566808 SFTA2Q6UW10 78 aa8.99□□□□□ -0.97
CDH3-205ENST00000566808 ZNF625Q96I27 306 aaPredicted RBP8.99□□□□□ -0.97
CDH3-205ENST00000566808 LINC01549A6NIU2 74 aa8.98□□□□□ -0.97
CDH3-205ENST00000566808 C9JQL5 133 aa8.97□□□□□ -0.97
CDH3-205ENST00000566808 PMVKQ15126 192 aa8.97□□□□□ -0.97
CDH3-205ENST00000566808 C9orf153Q5TBE3 101 aa8.97□□□□□ -0.97
CDH3-205ENST00000566808 LIMD2Q9BT23 127 aa8.96□□□□□ -0.98
CDH3-205ENST00000566808 MACF1Q9UPN3 7388 aaKnown RBP8.96□□□□□ -0.98
CDH3-205ENST00000566808 ERC2-IT1O76042 136 aa8.94□□□□□ -0.98
CDH3-205ENST00000566808 IGLC3P0DOY3 106 aa8.94□□□□□ -0.98
CDH3-205ENST00000566808 NCR3O14931 201 aa8.93□□□□□ -0.98
CDH3-205ENST00000566808 IGLV6-57P01721 117 aa8.93□□□□□ -0.98
CDH3-205ENST00000566808 B5MCH6 92 aa8.92□□□□□ -0.98
CDH3-205ENST00000566808 ZNF22P17026 224 aaPredicted RBP8.92□□□□□ -0.98
CDH3-205ENST00000566808 LINC00158P58513 81 aa8.92□□□□□ -0.98
CDH3-205ENST00000566808 SYNE2Q8WXH0 6885 aaKnown RBP8.92□□□□□ -0.98
CDH3-205ENST00000566808 S100A12P80511 92 aa8.91□□□□□ -0.98
CDH3-205ENST00000566808 TRAV9-1A0A075B6T8 112 aa8.9□□□□□ -0.98
CDH3-205ENST00000566808 TRBV10-3A0A0K0K1G6 114 aa8.9□□□□□ -0.98
CDH3-205ENST00000566808 RPL37P61927 97 aaKnown RBP8.9□□□□□ -0.98
CDH3-205ENST00000566808 PEA15Q15121 130 aa8.9□□□□□ -0.98
CDH3-205ENST00000566808 BOD1L2Q8IYS8 172 aa8.9□□□□□ -0.98
CDH3-205ENST00000566808 Q9BRP9 147 aa8.89□□□□□ -0.99
CDH3-205ENST00000566808 Q6ZRX8 168 aa8.88□□□□□ -0.99
CDH3-205ENST00000566808 A0A0U1RRA0 63 aa8.86□□□□□ -0.99
CDH3-205ENST00000566808 LINC01546A6NGU7 62 aa8.86□□□□□ -0.99
CDH3-205ENST00000566808 KRTAP19-1Q8IUB9 90 aa8.86□□□□□ -0.99
CDH3-205ENST00000566808 KRTAP9-8Q9BYQ0 159 aa8.84□□□□□ -0.99
CDH3-205ENST00000566808 ATP6V1G1O75348 118 aa8.83□□□□□ -1
CDH3-205ENST00000566808 FA2HQ7L5A8 372 aa8.83□□□□□ -1
CDH3-205ENST00000566808 KIAA1644Q3SXP7 199 aa8.82□□□□□ -1
CDH3-205ENST00000566808 SMIM13P0DJ93 91 aa8.81□□□□□ -1
CDH3-205ENST00000566808 NDUFA6P56556 154 aa8.81□□□□□ -1
CDH3-205ENST00000566808 HRCT1Q6UXD1 115 aa8.81□□□□□ -1
CDH3-205ENST00000566808 MT-ND4LP03901 98 aa8.8□□□□□ -1
CDH3-205ENST00000566808 TMEM170BQ5T4T1 132 aa8.8□□□□□ -1
CDH3-205ENST00000566808 MIR7-3HGQ8N6C7 128 aa8.8□□□□□ -1
CDH3-205ENST00000566808 ANAPC16Q96DE5 110 aa8.8□□□□□ -1
CDH3-205ENST00000566808 C11orf86A6NJI1 115 aa8.79□□□□□ -1
CDH3-205ENST00000566808 DDTP30046 118 aa8.79□□□□□ -1
CDH3-205ENST00000566808 JOSD1Q15040 202 aaPredicted RBP8.79□□□□□ -1
CDH3-205ENST00000566808 Q6Q795 121 aa8.79□□□□□ -1
CDH3-205ENST00000566808 MEIG1Q5JSS6 88 aa8.77□□□□□ -1.01
CDH3-205ENST00000566808 SMCO4Q9NRQ5 59 aa8.77□□□□□ -1.01
CDH3-205ENST00000566808 TRBV10-2A0A0K0K1G8 114 aa8.76□□□□□ -1.01
CDH3-205ENST00000566808 C5orf52A6NGY3 159 aa8.76□□□□□ -1.01
CDH3-205ENST00000566808 ST20-AS1Q8NBB2 130 aa8.75□□□□□ -1.01
CDH3-205ENST00000566808 SLC25A34Q6PIV7 304 aa8.74□□□□□ -1.01
CDH3-205ENST00000566808 CD164Q04900 197 aa8.73□□□□□ -1.01
CDH3-205ENST00000566808 A0A096LNJ9 63 aa8.72□□□□□ -1.01
CDH3-205ENST00000566808 LINC00587B1AMM8 73 aa8.72□□□□□ -1.01
CDH3-205ENST00000566808 SPRR1BP22528 89 aa8.72□□□□□ -1.01
CDH3-205ENST00000566808 HERV-K104P63124 156 aa8.72□□□□□ -1.01
CDH3-205ENST00000566808 LCE2BO14633 110 aa8.71□□□□□ -1.02
CDH3-205ENST00000566808 Q5XG85 94 aa8.71□□□□□ -1.02
CDH3-205ENST00000566808 MAP1LC3CQ9BXW4 147 aa8.71□□□□□ -1.02
CDH3-205ENST00000566808 SPANXB1Q9NS25 103 aaPredicted RBP8.71□□□□□ -1.02
CDH3-205ENST00000566808 TRAV23DV6A0A075B6W5 121 aa8.7□□□□□ -1.02
CDH3-205ENST00000566808 TMEM223A0PJW6 202 aa8.7□□□□□ -1.02
CDH3-205ENST00000566808 C1orf195Q5TG92 126 aa8.7□□□□□ -1.02
CDH3-205ENST00000566808 BAGE3Q86Y29 109 aa8.7□□□□□ -1.02
CDH3-205ENST00000566808 LOC107984156A0A0G2JMH3 177 aa8.68□□□□□ -1.02
CDH3-205ENST00000566808 S100A7L2Q5SY68 101 aa8.68□□□□□ -1.02
CDH3-205ENST00000566808 ARL17AQ8IVW1 177 aa8.68□□□□□ -1.02
CDH3-205ENST00000566808 LAMTOR3Q9UHA4 124 aa8.68□□□□□ -1.02
CDH3-205ENST00000566808 H7C2G1 150 aa8.67□□□□□ -1.02
CDH3-205ENST00000566808 ZNF73O43830 326 aaPredicted RBP8.67□□□□□ -1.02
CDH3-205ENST00000566808 HBDP02042 147 aa8.67□□□□□ -1.02
CDH3-205ENST00000566808 MT2AP02795 61 aa8.66□□□□□ -1.02
CDH3-205ENST00000566808 CHTOPQ9Y3Y2 248 aaKnown RBP8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms