RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LINC00959A0A1B0GUT2 108 aa9.18□□□□□ -0.94
VPS4A-204ENST00000566354 CD164Q04900 197 aa9.18□□□□□ -0.94
VPS4A-204ENST00000566354 PAX4O43316 350 aa9.17□□□□□ -0.94
VPS4A-204ENST00000566354 KRTAP10-11P60412 298 aa9.17□□□□□ -0.94
VPS4A-204ENST00000566354 OBSCN-AS1Q96MR7 158 aa9.17□□□□□ -0.94
VPS4A-204ENST00000566354 A0A1B0GUV1 79 aa9.15□□□□□ -0.95
VPS4A-204ENST00000566354 LECT2O14960 151 aa9.15□□□□□ -0.95
VPS4A-204ENST00000566354 SS18Q15532 418 aa9.14□□□□□ -0.95
VPS4A-204ENST00000566354 C14orf132Q9NPU4 83 aa9.14□□□□□ -0.95
VPS4A-204ENST00000566354 DEFB130BP0DP73 79 aa9.14□□□□□ -0.95
VPS4A-204ENST00000566354 DEFB130AP0DP74 79 aa9.14□□□□□ -0.95
VPS4A-204ENST00000566354 EGFEM1PQ0D2K5 195 aa9.14□□□□□ -0.95
VPS4A-204ENST00000566354 C9orf129Q5T035 196 aaKnown RBP9.14□□□□□ -0.95
VPS4A-204ENST00000566354 Q8IZM0 81 aa9.14□□□□□ -0.95
VPS4A-204ENST00000566354 LINC00612Q8N6U2 182 aa9.13□□□□□ -0.95
VPS4A-204ENST00000566354 XCL1P47992 114 aa9.13□□□□□ -0.95
VPS4A-204ENST00000566354 DNAH3Q8TD57 4116 aa9.12□□□□□ -0.95
VPS4A-204ENST00000566354 GYPEP15421 78 aa9.12□□□□□ -0.95
VPS4A-204ENST00000566354 LINC01561Q8N1V8 128 aa9.12□□□□□ -0.95
VPS4A-204ENST00000566354 IGHV4-30-4P0DP06 118 aa9.11□□□□□ -0.95
VPS4A-204ENST00000566354 PMAIP1Q13794 54 aa9.11□□□□□ -0.95
VPS4A-204ENST00000566354 C11orf68Q9H3H3 251 aaKnown RBP9.11□□□□□ -0.95
VPS4A-204ENST00000566354 ORMDL1Q9P0S3 153 aa9.11□□□□□ -0.95
VPS4A-204ENST00000566354 Q6JHZ5 121 aa9.1□□□□□ -0.95
VPS4A-204ENST00000566354 NCR3O14931 201 aa9.09□□□□□ -0.95
VPS4A-204ENST00000566354 LINC00846Q9NV44 126 aa9.09□□□□□ -0.95
VPS4A-204ENST00000566354 SLPIP03973 132 aa9.09□□□□□ -0.95
VPS4A-204ENST00000566354 PRO0255Q9UI72 69 aa9.09□□□□□ -0.95
VPS4A-204ENST00000566354 BCE1O60756 84 aa9.08□□□□□ -0.96
VPS4A-204ENST00000566354 ATP5EP56381 51 aaPredicted RBP9.08□□□□□ -0.96
VPS4A-204ENST00000566354 DNHD1Q96M86 4753 aa9.08□□□□□ -0.96
VPS4A-204ENST00000566354 PRB2P02812 416 aaPredicted RBP9.08□□□□□ -0.96
VPS4A-204ENST00000566354 COX17Q14061 63 aa9.08□□□□□ -0.96
VPS4A-204ENST00000566354 LINC00167Q96N53 147 aa9.08□□□□□ -0.96
VPS4A-204ENST00000566354 DEFB135Q30KP9 77 aa9.07□□□□□ -0.96
VPS4A-204ENST00000566354 CYSTM1Q9H1C7 97 aa9.07□□□□□ -0.96
VPS4A-204ENST00000566354 APOC4P55056 127 aa9.06□□□□□ -0.96
VPS4A-204ENST00000566354 CLPSL2Q6UWE3 100 aa9.06□□□□□ -0.96
VPS4A-204ENST00000566354 JMJD7-PLA2G4BH0Y9G9 81 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 CCKP06307 115 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 NANOS2P60321 138 aaKnown RBP9.05□□□□□ -0.96
VPS4A-204ENST00000566354 CD164L2Q6UWJ8 174 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 Q6ZRU5 148 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 Q8N814 137 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 IGKV3D-7A0A0C4DH55 119 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 KIAA0087Q14695 138 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 X6R8D5 127 aa9.05□□□□□ -0.96
VPS4A-204ENST00000566354 TMEM256-PLSCR3K7ERE1 68 aa9.04□□□□□ -0.96
VPS4A-204ENST00000566354 IGHV4-28A0A0C4DH34 117 aa9.04□□□□□ -0.96
VPS4A-204ENST00000566354 PRR3P79522 188 aaKnown RBP9.04□□□□□ -0.96
VPS4A-204ENST00000566354 PRR15Q8IV56 129 aa9.04□□□□□ -0.96
VPS4A-204ENST00000566354 LINC00269Q8N2A0 174 aa9.04□□□□□ -0.96
VPS4A-204ENST00000566354 A0A096LPF7 62 aa9.03□□□□□ -0.96
VPS4A-204ENST00000566354 CHCHD10Q8WYQ3 142 aaPredicted RBP9.03□□□□□ -0.96
VPS4A-204ENST00000566354 S100A7L2Q5SY68 101 aa9.02□□□□□ -0.97
VPS4A-204ENST00000566354 BRK1Q8WUW1 75 aa9.02□□□□□ -0.97
VPS4A-204ENST00000566354 TENM3Q9P273 2699 aa9.02□□□□□ -0.97
VPS4A-204ENST00000566354 LYRM9A8MSI8 78 aa9.02□□□□□ -0.97
VPS4A-204ENST00000566354 RETNQ9HD89 108 aa9.01□□□□□ -0.97
VPS4A-204ENST00000566354 TRBV7-6A0A0J9YX20 115 aa9□□□□□ -0.97
VPS4A-204ENST00000566354 DEFB4AO15263 64 aa9□□□□□ -0.97
VPS4A-204ENST00000566354 ANGP03950 147 aaKnown RBP9□□□□□ -0.97
VPS4A-204ENST00000566354 REG3AQ06141 175 aa9□□□□□ -0.97
VPS4A-204ENST00000566354 KPRPQ5T749 579 aaPredicted RBP9□□□□□ -0.97
VPS4A-204ENST00000566354 FP248Q71RG6 208 aaPredicted RBP9□□□□□ -0.97
VPS4A-204ENST00000566354 K7EIL1 84 aa8.99□□□□□ -0.97
VPS4A-204ENST00000566354 IGLV10-54A0A075B6I4 117 aa8.98□□□□□ -0.97
VPS4A-204ENST00000566354 A0A087WVE0 104 aa8.98□□□□□ -0.97
VPS4A-204ENST00000566354 USP17L23D6RBM5 183 aa8.98□□□□□ -0.97
VPS4A-204ENST00000566354 ATP5EP2Q5VTU8 51 aa8.98□□□□□ -0.97
VPS4A-204ENST00000566354 C6orf99Q4VX62 202 aa8.98□□□□□ -0.97
VPS4A-204ENST00000566354 C9orf116Q5BN46 136 aaPredicted RBP8.98□□□□□ -0.97
VPS4A-204ENST00000566354 MUC7Q8TAX7 377 aa8.98□□□□□ -0.97
VPS4A-204ENST00000566354 A0A0U1RQV1 116 aa8.97□□□□□ -0.97
VPS4A-204ENST00000566354 J3QL48 77 aa8.97□□□□□ -0.97
VPS4A-204ENST00000566354 NDUFC1O43677 76 aa8.97□□□□□ -0.97
VPS4A-204ENST00000566354 GHRHP01286 108 aa8.97□□□□□ -0.97
VPS4A-204ENST00000566354 Q8NAQ8 132 aa8.97□□□□□ -0.97
VPS4A-204ENST00000566354 LINC00575Q6W349 94 aa8.96□□□□□ -0.97
VPS4A-204ENST00000566354 LYPD5Q6UWN5 251 aa8.96□□□□□ -0.98
VPS4A-204ENST00000566354 Q8N3U1 123 aa8.95□□□□□ -0.98
VPS4A-204ENST00000566354 Q8NDZ9 215 aa8.95□□□□□ -0.98
VPS4A-204ENST00000566354 MIFP14174 115 aa8.94□□□□□ -0.98
VPS4A-204ENST00000566354 DAD1P61803 113 aa8.94□□□□□ -0.98
VPS4A-204ENST00000566354 KRTAP21-3Q3LHN1 58 aa8.94□□□□□ -0.98
VPS4A-204ENST00000566354 UBL5Q9BZL1 73 aa8.93□□□□□ -0.98
VPS4A-204ENST00000566354 CELA1Q9UNI1 258 aa8.93□□□□□ -0.98
VPS4A-204ENST00000566354 A0A0J9YWU9 116 aa8.93□□□□□ -0.98
VPS4A-204ENST00000566354 TRBV10-3A0A0K0K1G6 114 aa8.92□□□□□ -0.98
VPS4A-204ENST00000566354 H7BZZ5 65 aa8.92□□□□□ -0.98
VPS4A-204ENST00000566354 RBM3P98179 157 aaKnown RBP8.92□□□□□ -0.98
VPS4A-204ENST00000566354 SPAG11BQ08648 103 aa8.92□□□□□ -0.98
VPS4A-204ENST00000566354 KLKP1Q107X0 134 aa8.92□□□□□ -0.98
VPS4A-204ENST00000566354 UNQ6190/PRO20217Q6UXQ8 127 aa8.92□□□□□ -0.98
VPS4A-204ENST00000566354 C10orf25Q5T742 122 aa8.92□□□□□ -0.98
VPS4A-204ENST00000566354 MRPL55Q7Z7F7 128 aaKnown RBP8.92□□□□□ -0.98
VPS4A-204ENST00000566354 COL7A1Q02388 2944 aa8.91□□□□□ -0.98
VPS4A-204ENST00000566354 IGLV6-57P01721 117 aa8.91□□□□□ -0.98
VPS4A-204ENST00000566354 LELP1Q5T871 98 aa8.91□□□□□ -0.98
VPS4A-204ENST00000566354 C6orf223Q8N319 242 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms