RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 AKAP14Q86UN6 197 aa4.02□□□□□ -1.77
VPS4A-203ENST00000564399 SND1-IT1Q9HBX3 110 aa4.02□□□□□ -1.77
VPS4A-203ENST00000564399 NAT8Q9UHE5 227 aa4.02□□□□□ -1.77
VPS4A-203ENST00000564399 LAMTOR2Q9Y2Q5 125 aa4.02□□□□□ -1.77
VPS4A-203ENST00000564399 IGLV9-49A0A0B4J1Y8 123 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 TINCRA0A1B0GVN0 87 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 G0S2P27469 103 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 RPS29P62273 56 aaKnown RBP4.01□□□□□ -1.77
VPS4A-203ENST00000564399 MOBPQ13875 183 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 COX6B2Q6YFQ2 88 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 SMCR5Q8TEV8 140 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 TIMM17AQ99595 171 aa4.01□□□□□ -1.77
VPS4A-203ENST00000564399 K7EMI3 77 aa4□□□□□ -1.77
VPS4A-203ENST00000564399 GAGE2AQ6NT46 116 aa4□□□□□ -1.77
VPS4A-203ENST00000564399 ATP5L2Q7Z4Y8 100 aa4□□□□□ -1.77
VPS4A-203ENST00000564399 SCGB3A1Q96QR1 104 aa4□□□□□ -1.77
VPS4A-203ENST00000564399 ERG28Q9UKR5 140 aa4□□□□□ -1.77
VPS4A-203ENST00000564399 IGLV5-45A0A087WSX0 123 aa3.99□□□□□ -1.77
VPS4A-203ENST00000564399 H3BRM9 83 aa3.99□□□□□ -1.77
VPS4A-203ENST00000564399 SSBP3-AS1Q7Z2R9 100 aa3.99□□□□□ -1.77
VPS4A-203ENST00000564399 ERASQ7Z444 233 aa3.99□□□□□ -1.77
VPS4A-203ENST00000564399 Q8NDZ9 215 aa3.99□□□□□ -1.77
VPS4A-203ENST00000564399 TOMM6Q96B49 74 aa3.99□□□□□ -1.77
VPS4A-203ENST00000564399 ZNF625Q96I27 306 aaPredicted RBP3.99□□□□□ -1.77
VPS4A-203ENST00000564399 NXT2Q9NPJ8 142 aaKnown RBP3.99□□□□□ -1.77
VPS4A-203ENST00000564399 ETDCA0A1B0GVM5 59 aa3.98□□□□□ -1.77
VPS4A-203ENST00000564399 COX17Q14061 63 aa3.98□□□□□ -1.77
VPS4A-203ENST00000564399 TCTE3Q8IZS6 198 aa3.98□□□□□ -1.77
VPS4A-203ENST00000564399 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
VPS4A-203ENST00000564399 C9orf92A6NGG3 77 aa3.97□□□□□ -1.77
VPS4A-203ENST00000564399 H3BS24 57 aa3.97□□□□□ -1.77
VPS4A-203ENST00000564399 PRYO14603 147 aa3.97□□□□□ -1.77
VPS4A-203ENST00000564399 ADCYAP1P18509 176 aa3.97□□□□□ -1.77
VPS4A-203ENST00000564399 LINC00483Q53H64 154 aa3.97□□□□□ -1.77
VPS4A-203ENST00000564399 CST9LQ9H4G1 147 aa3.97□□□□□ -1.77
VPS4A-203ENST00000564399 C9JQL5 133 aa3.96□□□□□ -1.78
VPS4A-203ENST00000564399 LCE3BQ5TA77 95 aa3.96□□□□□ -1.78
VPS4A-203ENST00000564399 SSPOA2VEC9 5147 aa3.96□□□□□ -1.78
VPS4A-203ENST00000564399 LINC00158P58513 81 aa3.95□□□□□ -1.78
VPS4A-203ENST00000564399 PEA15Q15121 130 aa3.95□□□□□ -1.78
VPS4A-203ENST00000564399 PMVKQ15126 192 aa3.95□□□□□ -1.78
VPS4A-203ENST00000564399 C9orf153Q5TBE3 101 aa3.95□□□□□ -1.78
VPS4A-203ENST00000564399 IGLV5-39A0A0G2JS06 123 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 A0A0U1RRA0 63 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 NCR3O14931 201 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 ATP6V1G1O75348 118 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 SPRR1AP35321 89 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 KRTAP4-12Q9BQ66 201 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 KCNQ1DNQ9H478 68 aa3.94□□□□□ -1.78
VPS4A-203ENST00000564399 LINC01549A6NIU2 74 aa3.93□□□□□ -1.78
VPS4A-203ENST00000564399 ERC2-IT1O76042 136 aa3.93□□□□□ -1.78
VPS4A-203ENST00000564399 NDUFA6P56556 154 aa3.93□□□□□ -1.78
VPS4A-203ENST00000564399 S100A12P80511 92 aa3.93□□□□□ -1.78
VPS4A-203ENST00000564399 KIAA1644Q3SXP7 199 aa3.93□□□□□ -1.78
VPS4A-203ENST00000564399 BOD1L2Q8IYS8 172 aa3.93□□□□□ -1.78
VPS4A-203ENST00000564399 KRTAP4-16G5E9R7 235 aaPredicted RBP3.92□□□□□ -1.78
VPS4A-203ENST00000564399 IGLV6-57P01721 117 aa3.92□□□□□ -1.78
VPS4A-203ENST00000564399 IGLC3P0DOY3 106 aa3.92□□□□□ -1.78
VPS4A-203ENST00000564399 ZNF22P17026 224 aaPredicted RBP3.92□□□□□ -1.78
VPS4A-203ENST00000564399 SFTA2Q6UW10 78 aa3.92□□□□□ -1.78
VPS4A-203ENST00000564399 USH2AO75445 5202 aa3.92□□□□□ -1.78
VPS4A-203ENST00000564399 FCGBPQ9Y6R7 5405 aaPredicted RBP3.92□□□□□ -1.78
VPS4A-203ENST00000564399 TRAV9-1A0A075B6T8 112 aa3.91□□□□□ -1.78
VPS4A-203ENST00000564399 TRBV10-3A0A0K0K1G6 114 aa3.91□□□□□ -1.78
VPS4A-203ENST00000564399 B5MCH6 92 aa3.91□□□□□ -1.78
VPS4A-203ENST00000564399 HRCT1Q6UXD1 115 aa3.91□□□□□ -1.78
VPS4A-203ENST00000564399 LIMD2Q9BT23 127 aa3.91□□□□□ -1.78
VPS4A-203ENST00000564399 MT-ND4LP03901 98 aa3.9□□□□□ -1.79
VPS4A-203ENST00000564399 TMEM170BQ5T4T1 132 aa3.9□□□□□ -1.79
VPS4A-203ENST00000564399 Q6Q795 121 aa3.9□□□□□ -1.79
VPS4A-203ENST00000564399 KRTAP19-1Q8IUB9 90 aa3.9□□□□□ -1.79
VPS4A-203ENST00000564399 CFC1P0CG37 223 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 SMIM13P0DJ93 91 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 MEIG1Q5JSS6 88 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 FA2HQ7L5A8 372 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 ANAPC16Q96DE5 110 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 Q9BRP9 147 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 SMCO4Q9NRQ5 59 aa3.89□□□□□ -1.79
VPS4A-203ENST00000564399 FLGP20930 4061 aaPredicted RBP3.89□□□□□ -1.79
VPS4A-203ENST00000564399 Q6ZRX8 168 aa3.88□□□□□ -1.79
VPS4A-203ENST00000564399 MIR7-3HGQ8N6C7 128 aa3.88□□□□□ -1.79
VPS4A-203ENST00000564399 LINC01546A6NGU7 62 aa3.87□□□□□ -1.79
VPS4A-203ENST00000564399 C11orf86A6NJI1 115 aa3.87□□□□□ -1.79
VPS4A-203ENST00000564399 DDTP30046 118 aa3.87□□□□□ -1.79
VPS4A-203ENST00000564399 RPL37P61927 97 aaKnown RBP3.87□□□□□ -1.79
VPS4A-203ENST00000564399 JOSD1Q15040 202 aaPredicted RBP3.87□□□□□ -1.79
VPS4A-203ENST00000564399 BAGE3Q86Y29 109 aa3.86□□□□□ -1.79
VPS4A-203ENST00000564399 ST20-AS1Q8NBB2 130 aa3.86□□□□□ -1.79
VPS4A-203ENST00000564399 MACF1Q9UPN3 7388 aaKnown RBP3.85□□□□□ -1.79
VPS4A-203ENST00000564399 hCG_2014768A0A024R1R8 64 aa3.84□□□□□ -1.79
VPS4A-203ENST00000564399 LINC00587B1AMM8 73 aa3.84□□□□□ -1.79
VPS4A-203ENST00000564399 S100A7L2Q5SY68 101 aa3.84□□□□□ -1.79
VPS4A-203ENST00000564399 SLC25A34Q6PIV7 304 aa3.84□□□□□ -1.79
VPS4A-203ENST00000564399 MAP1LC3CQ9BXW4 147 aa3.84□□□□□ -1.79
VPS4A-203ENST00000564399 TRBV10-2A0A0K0K1G8 114 aa3.83□□□□□ -1.8
VPS4A-203ENST00000564399 TMEM223A0PJW6 202 aa3.83□□□□□ -1.8
VPS4A-203ENST00000564399 H7C2G1 150 aa3.83□□□□□ -1.8
VPS4A-203ENST00000564399 HERV-K104P63124 156 aa3.83□□□□□ -1.8
VPS4A-203ENST00000564399 KRTAP9-8Q9BYQ0 159 aa3.83□□□□□ -1.8
VPS4A-203ENST00000564399 LAMTOR3Q9UHA4 124 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms