RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 Q8NDZ9 215 aa8.36□□□□□ -1.07
SMPD3-204ENST00000563396 SCO1O75880 301 aa8.35□□□□□ -1.07
SMPD3-204ENST00000563396 IGKV2-28A0A075B6P5 120 aa8.34□□□□□ -1.07
SMPD3-204ENST00000563396 IGKV2D-28P01615 120 aa8.34□□□□□ -1.07
SMPD3-204ENST00000563396 TRGC2P03986 189 aa8.34□□□□□ -1.07
SMPD3-204ENST00000563396 RPL24P83731 157 aaKnown RBP8.34□□□□□ -1.07
SMPD3-204ENST00000563396 FAM19A2Q8N3H0 131 aa8.34□□□□□ -1.07
SMPD3-204ENST00000563396 RNF213Q63HN8 5207 aa8.33□□□□□ -1.08
SMPD3-204ENST00000563396 A0A087X002 238 aa8.33□□□□□ -1.08
SMPD3-204ENST00000563396 LPAP08519 4548 aa8.33□□□□□ -1.08
SMPD3-204ENST00000563396 SERF1AO75920 110 aa8.32□□□□□ -1.08
SMPD3-204ENST00000563396 TMEM126AQ9H061 195 aa8.32□□□□□ -1.08
SMPD3-204ENST00000563396 LEPROTL1O95214 131 aa8.31□□□□□ -1.08
SMPD3-204ENST00000563396 UBE2AP49459 152 aa8.31□□□□□ -1.08
SMPD3-204ENST00000563396 M0R378 163 aa8.3□□□□□ -1.08
SMPD3-204ENST00000563396 HERV-K104P63124 156 aa8.3□□□□□ -1.08
SMPD3-204ENST00000563396 COLCA2A8K830 154 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 TMEM238C9JI98 176 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 CRYGAP11844 174 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 LINC00158P58513 81 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 PRLHP81277 87 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 FAM229BQ4G0N7 80 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 SLC7A5P1Q8MH63 180 aa8.29□□□□□ -1.08
SMPD3-204ENST00000563396 SMIM13P0DJ93 91 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 PLNP26678 52 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 TSPEAR-AS2P59090 65 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 KRTAP13-2Q52LG2 175 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 FAM19A1Q7Z5A9 133 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 NDUFA12Q9UI09 145 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 HSPB8Q9UJY1 196 aa8.27□□□□□ -1.09
SMPD3-204ENST00000563396 A0A0U1RRA0 63 aa8.26□□□□□ -1.09
SMPD3-204ENST00000563396 LINC00587B1AMM8 73 aa8.26□□□□□ -1.09
SMPD3-204ENST00000563396 MEIG1Q5JSS6 88 aa8.26□□□□□ -1.09
SMPD3-204ENST00000563396 MIR7-3HGQ8N6C7 128 aa8.26□□□□□ -1.09
SMPD3-204ENST00000563396 TYMSOSQ8TAI1 123 aa8.26□□□□□ -1.09
SMPD3-204ENST00000563396 IGKV2D-26A0A0A0MRZ7 120 aa8.25□□□□□ -1.09
SMPD3-204ENST00000563396 MYMXA0A1B0GTQ4 84 aa8.25□□□□□ -1.09
SMPD3-204ENST00000563396 H0Y8G0 127 aa8.25□□□□□ -1.09
SMPD3-204ENST00000563396 LCE2AQ5TA79 106 aaPredicted RBP8.25□□□□□ -1.09
SMPD3-204ENST00000563396 PRYO14603 147 aa8.24□□□□□ -1.09
SMPD3-204ENST00000563396 LEPROTO15243 131 aa8.24□□□□□ -1.09
SMPD3-204ENST00000563396 SPRR1AP35321 89 aa8.24□□□□□ -1.09
SMPD3-204ENST00000563396 ANAPC11Q9NYG5 84 aa8.24□□□□□ -1.09
SMPD3-204ENST00000563396 LOC107984156A0A0G2JMH3 177 aa8.23□□□□□ -1.09
SMPD3-204ENST00000563396 DPM2O94777 84 aa8.23□□□□□ -1.09
SMPD3-204ENST00000563396 ARL17AQ8IVW1 177 aa8.23□□□□□ -1.09
SMPD3-204ENST00000563396 BOD1L2Q8IYS8 172 aa8.23□□□□□ -1.09
SMPD3-204ENST00000563396 PLEKHB2Q96CS7 222 aa8.23□□□□□ -1.09
SMPD3-204ENST00000563396 MAP1LC3CQ9BXW4 147 aa8.23□□□□□ -1.09
SMPD3-204ENST00000563396 KRTAP4-16G5E9R7 235 aaPredicted RBP8.21□□□□□ -1.1
SMPD3-204ENST00000563396 J3QQQ9 107 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 ATP6V1G1O75348 118 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 IGKCP01834 107 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 FABP4P15090 132 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 NMUP48645 174 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 HERVK_113P61574 105 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 LINC00337Q8N6G1 96 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 KCNQ1DNQ9H478 68 aa8.21□□□□□ -1.1
SMPD3-204ENST00000563396 NCR3O14931 201 aa8.2□□□□□ -1.1
SMPD3-204ENST00000563396 CTAG1AP78358 180 aa8.2□□□□□ -1.1
SMPD3-204ENST00000563396 EIF4EBP3O60516 100 aaPredicted RBP8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BKO60814 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BJP06899 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BOP23527 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BBP33778 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BDP58876 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BCP62807 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 PRR4Q16378 134 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST2H2BEQ16778 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.19□□□□□ -1.1
SMPD3-204ENST00000563396 LINC00304Q8N9R0 145 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BHQ93079 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 SPRR4Q96PI1 79 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BNQ99877 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIST1H2BMQ99879 126 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 PMCHL2Q9BQD1 86 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 HIGD2AQ9BW72 106 aa8.19□□□□□ -1.1
SMPD3-204ENST00000563396 TRBV10-3A0A0K0K1G6 114 aa8.18□□□□□ -1.1
SMPD3-204ENST00000563396 TRBV10-2A0A0K0K1G8 114 aa8.18□□□□□ -1.1
SMPD3-204ENST00000563396 E9PLD3 99 aa8.17□□□□□ -1.1
SMPD3-204ENST00000563396 TSPAN13O95857 204 aa8.17□□□□□ -1.1
SMPD3-204ENST00000563396 DAND5Q8N907 189 aa8.17□□□□□ -1.1
SMPD3-204ENST00000563396 LGALS3P17931 250 aaKnown RBP8.16□□□□□ -1.1
SMPD3-204ENST00000563396 ZNF706Q9Y5V0 76 aaPredicted RBP8.16□□□□□ -1.1
SMPD3-204ENST00000563396 SYS1-DBNDD2H3BUS1 97 aa8.15□□□□□ -1.1
SMPD3-204ENST00000563396 NDUFC2O95298 119 aa8.15□□□□□ -1.1
SMPD3-204ENST00000563396 C3orf22Q8N5N4 141 aa8.15□□□□□ -1.1
SMPD3-204ENST00000563396 SPANXB1Q9NS25 103 aaPredicted RBP8.15□□□□□ -1.1
SMPD3-204ENST00000563396 SMCR5Q8TEV8 140 aa8.14□□□□□ -1.11
SMPD3-204ENST00000563396 MIEN1Q9BRT3 115 aa8.14□□□□□ -1.11
SMPD3-204ENST00000563396 A0A0J9YXY3 114 aa8.13□□□□□ -1.11
SMPD3-204ENST00000563396 ETDCA0A1B0GVM5 59 aa8.13□□□□□ -1.11
SMPD3-204ENST00000563396 DDTP30046 118 aa8.13□□□□□ -1.11
SMPD3-204ENST00000563396 S100A12P80511 92 aa8.13□□□□□ -1.11
SMPD3-204ENST00000563396 LINC01545Q5VT33 79 aa8.13□□□□□ -1.11
SMPD3-204ENST00000563396 B5MCH6 92 aa8.12□□□□□ -1.11
SMPD3-204ENST00000563396 IGLV6-57P01721 117 aa8.12□□□□□ -1.11
SMPD3-204ENST00000563396 LORP23490 312 aaPredicted RBP8.12□□□□□ -1.11
SMPD3-204ENST00000563396 LINC00483Q53H64 154 aa8.12□□□□□ -1.11
SMPD3-204ENST00000563396 SOSTDC1Q6X4U4 206 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms