RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 CFC1P0CG37 223 aa9□□□□□ -0.97
CLK3-209ENST00000562670 NPC2P61916 151 aa9□□□□□ -0.97
CLK3-209ENST00000562670 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.99□□□□□ -0.97
CLK3-209ENST00000562670 PLA2G2DQ9UNK4 145 aa8.98□□□□□ -0.97
CLK3-209ENST00000562670 HECTD4Q9Y4D8 3996 aa8.97□□□□□ -0.97
CLK3-209ENST00000562670 C16orf90A8MZG2 172 aa8.97□□□□□ -0.97
CLK3-209ENST00000562670 RPL18AQ02543 176 aaKnown RBP8.97□□□□□ -0.97
CLK3-209ENST00000562670 TNP2Q05952 138 aa8.97□□□□□ -0.97
CLK3-209ENST00000562670 FAT2Q9NYQ8 4349 aa8.96□□□□□ -0.97
CLK3-209ENST00000562670 IGKV2-28A0A075B6P5 120 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 TRAV13-2A0A0B4J235 113 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 TRBV10-2A0A0K0K1G8 114 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 K7ERJ3 54 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 IGKV2D-28P01615 120 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 LINC00336Q6ZUF6 198 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 RAB37Q96AX2 223 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 XAGE1AQ9HD64 81 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 PRO1854Q9UHT4 67 aa8.96□□□□□ -0.98
CLK3-209ENST00000562670 C9orf129Q5T035 196 aaKnown RBP8.95□□□□□ -0.98
CLK3-209ENST00000562670 IGLV5-37A0A075B6J1 123 aa8.94□□□□□ -0.98
CLK3-209ENST00000562670 TAX1BP3O14907 124 aa8.94□□□□□ -0.98
CLK3-209ENST00000562670 VPREB1P12018 145 aa8.94□□□□□ -0.98
CLK3-209ENST00000562670 GAGE2EQ4V326 116 aa8.94□□□□□ -0.98
CLK3-209ENST00000562670 LINC00474Q9P2X8 69 aa8.94□□□□□ -0.98
CLK3-209ENST00000562670 GAGE2DQ9UEU5 116 aa8.94□□□□□ -0.98
CLK3-209ENST00000562670 SDIM1Q6ZPB5 146 aa8.93□□□□□ -0.98
CLK3-209ENST00000562670 LINC00337Q8N6G1 96 aa8.93□□□□□ -0.98
CLK3-209ENST00000562670 Q8NDZ9 215 aa8.93□□□□□ -0.98
CLK3-209ENST00000562670 RYR2Q92736 4967 aa8.92□□□□□ -0.98
CLK3-209ENST00000562670 DNAH11Q96DT5 4516 aa8.92□□□□□ -0.98
CLK3-209ENST00000562670 A0A096LNI7 61 aa8.92□□□□□ -0.98
CLK3-209ENST00000562670 IGLV5-52A0A0A0MRZ9 124 aa8.91□□□□□ -0.98
CLK3-209ENST00000562670 RPL13AP40429 203 aaKnown RBP8.91□□□□□ -0.98
CLK3-209ENST00000562670 GAGE2BQ13066 116 aa8.91□□□□□ -0.98
CLK3-209ENST00000562670 PGPEP1Q9NXJ5 209 aa8.91□□□□□ -0.98
CLK3-209ENST00000562670 KMT2CQ8NEZ4 4911 aaKnown RBP8.91□□□□□ -0.98
CLK3-209ENST00000562670 C9orf118A6NHY6 69 aa8.9□□□□□ -0.98
CLK3-209ENST00000562670 TSPAN13O95857 204 aa8.9□□□□□ -0.98
CLK3-209ENST00000562670 M0R378 163 aa8.89□□□□□ -0.99
CLK3-209ENST00000562670 TMEM126AQ9H061 195 aa8.89□□□□□ -0.99
CLK3-209ENST00000562670 IGLV6-57P01721 117 aa8.88□□□□□ -0.99
CLK3-209ENST00000562670 CBY1Q9Y3M2 126 aa8.88□□□□□ -0.99
CLK3-209ENST00000562670 EPM2AB3EWF7 344 aa8.87□□□□□ -0.99
CLK3-209ENST00000562670 NCR3O14931 201 aa8.87□□□□□ -0.99
CLK3-209ENST00000562670 SERTAD4-AS1Q5TG53 156 aa8.87□□□□□ -0.99
CLK3-209ENST00000562670 NKAPP1Q8N9T2 125 aa8.87□□□□□ -0.99
CLK3-209ENST00000562670 SPACA4Q8TDM5 124 aa8.87□□□□□ -0.99
CLK3-209ENST00000562670 IGKV2-24A0A0C4DH68 120 aa8.86□□□□□ -0.99
CLK3-209ENST00000562670 RPL28P46779 137 aaKnown RBP8.86□□□□□ -0.99
CLK3-209ENST00000562670 PRR3P79522 188 aaKnown RBP8.86□□□□□ -0.99
CLK3-209ENST00000562670 LYRM7Q5U5X0 104 aa8.86□□□□□ -0.99
CLK3-209ENST00000562670 PKD1P98161 4303 aa8.86□□□□□ -0.99
CLK3-209ENST00000562670 H3BUT2 72 aa8.85□□□□□ -0.99
CLK3-209ENST00000562670 KRTAP10-2P60368 255 aa8.85□□□□□ -0.99
CLK3-209ENST00000562670 Q1RN00 199 aa8.85□□□□□ -0.99
CLK3-209ENST00000562670 S100A7L2Q5SY68 101 aa8.85□□□□□ -0.99
CLK3-209ENST00000562670 KRTAP7-1Q8IUC3 87 aa8.85□□□□□ -0.99
CLK3-209ENST00000562670 DNAH5Q8TE73 4624 aa8.85□□□□□ -0.99
CLK3-209ENST00000562670 A0A1W2PPM0 123 aa8.84□□□□□ -0.99
CLK3-209ENST00000562670 FAM168BA1KXE4 195 aa8.84□□□□□ -0.99
CLK3-209ENST00000562670 LINC01620Q4KN68 170 aa8.84□□□□□ -0.99
CLK3-209ENST00000562670 OR13C6PQ8NH95 151 aa8.84□□□□□ -0.99
CLK3-209ENST00000562670 CHTF8P0CG12 524 aa8.83□□□□□ -1
CLK3-209ENST00000562670 FAM19A5Q7Z5A7 132 aaPredicted RBP8.83□□□□□ -1
CLK3-209ENST00000562670 MRPL55Q7Z7F7 128 aaKnown RBP8.83□□□□□ -1
CLK3-209ENST00000562670 C7orf33Q8WU49 177 aa8.83□□□□□ -1
CLK3-209ENST00000562670 C22orf24Q9Y442 160 aa8.83□□□□□ -1
CLK3-209ENST00000562670 TRBV10-3A0A0K0K1G6 114 aa8.82□□□□□ -1
CLK3-209ENST00000562670 H7C2G1 150 aa8.82□□□□□ -1
CLK3-209ENST00000562670 TRIAP1O43715 76 aa8.82□□□□□ -1
CLK3-209ENST00000562670 FABP2P12104 132 aa8.82□□□□□ -1
CLK3-209ENST00000562670 SMIM11BQ8TCY0 68 aa8.82□□□□□ -1
CLK3-209ENST00000562670 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.82□□□□□ -1
CLK3-209ENST00000562670 A0A1B0GVY2 172 aa8.81□□□□□ -1
CLK3-209ENST00000562670 A0A1W2PNN7 141 aa8.81□□□□□ -1
CLK3-209ENST00000562670 M0QXV9 152 aa8.81□□□□□ -1
CLK3-209ENST00000562670 COX6CP09669 75 aa8.81□□□□□ -1
CLK3-209ENST00000562670 Q6ZSA8 131 aa8.81□□□□□ -1
CLK3-209ENST00000562670 DNAH8Q96JB1 4490 aa8.8□□□□□ -1
CLK3-209ENST00000562670 TRAV23DV6A0A075B6W5 121 aa8.8□□□□□ -1
CLK3-209ENST00000562670 PANO1I0J062 215 aa8.8□□□□□ -1
CLK3-209ENST00000562670 PSMB2P49721 201 aa8.8□□□□□ -1
CLK3-209ENST00000562670 NAA38Q9BRA0 125 aaKnown RBP8.8□□□□□ -1
CLK3-209ENST00000562670 KCNQ1DNQ9H478 68 aa8.8□□□□□ -1
CLK3-209ENST00000562670 PLAC8Q9NZF1 115 aa8.8□□□□□ -1
CLK3-209ENST00000562670 IGLV1-50A0A075B6I6 118 aa8.79□□□□□ -1
CLK3-209ENST00000562670 TRBV7-6A0A0J9YX20 115 aa8.79□□□□□ -1
CLK3-209ENST00000562670 PRYO14603 147 aa8.79□□□□□ -1
CLK3-209ENST00000562670 FUSP35637 526 aaKnown RBP eCLIP8.79□□□□□ -1
CLK3-209ENST00000562670 LINC00167Q96N53 147 aa8.79□□□□□ -1
CLK3-209ENST00000562670 TRBV20-1A0A075B6N2 111 aa8.78□□□□□ -1
CLK3-209ENST00000562670 A0A087WYN8 130 aa8.77□□□□□ -1.01
CLK3-209ENST00000562670 A0A1B0GV90 55 aa8.77□□□□□ -1.01
CLK3-209ENST00000562670 H0YGX0 51 aa8.77□□□□□ -1.01
CLK3-209ENST00000562670 ZNF73O43830 326 aaPredicted RBP8.77□□□□□ -1.01
CLK3-209ENST00000562670 DIRC1Q969H9 104 aa8.77□□□□□ -1.01
CLK3-209ENST00000562670 K7EP34 96 aa8.76□□□□□ -1.01
CLK3-209ENST00000562670 SPRR1AP35321 89 aa8.76□□□□□ -1.01
CLK3-209ENST00000562670 SPCS1Q9Y6A9 102 aa8.76□□□□□ -1.01
CLK3-209ENST00000562670 GAGE10A6NGK3 116 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms