RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 LOC107984640A0A0U1RRK4 108 aa8.74□□□□□ -1.01
VPS39-206ENST00000562662 A0A1B0GWB2 263 aa8.74□□□□□ -1.01
VPS39-206ENST00000562662 RPL18AQ02543 176 aaKnown RBP8.74□□□□□ -1.01
VPS39-206ENST00000562662 GAGE2EQ4V326 116 aa8.74□□□□□ -1.01
VPS39-206ENST00000562662 C9orf163Q8N9P6 203 aa8.74□□□□□ -1.01
VPS39-206ENST00000562662 NHP2Q9NX24 153 aaKnown RBP8.74□□□□□ -1.01
VPS39-206ENST00000562662 GAGE2DQ9UEU5 116 aa8.74□□□□□ -1.01
VPS39-206ENST00000562662 A6NDN8 102 aa8.73□□□□□ -1.01
VPS39-206ENST00000562662 CFC1BP0CG36 223 aa8.73□□□□□ -1.01
VPS39-206ENST00000562662 CFC1P0CG37 223 aa8.73□□□□□ -1.01
VPS39-206ENST00000562662 Q8NDZ9 215 aa8.73□□□□□ -1.01
VPS39-206ENST00000562662 XAGE1AQ9HD64 81 aa8.73□□□□□ -1.01
VPS39-206ENST00000562662 K7ERJ3 54 aa8.72□□□□□ -1.01
VPS39-206ENST00000562662 C9orf129Q5T035 196 aaKnown RBP8.72□□□□□ -1.01
VPS39-206ENST00000562662 A0A0B4J2C4 111 aa8.71□□□□□ -1.02
VPS39-206ENST00000562662 NDUFC2O95298 119 aa8.71□□□□□ -1.02
VPS39-206ENST00000562662 IGKV2-28A0A075B6P5 120 aa8.7□□□□□ -1.02
VPS39-206ENST00000562662 A0A096LNI7 61 aa8.7□□□□□ -1.02
VPS39-206ENST00000562662 IGKV2D-28P01615 120 aa8.7□□□□□ -1.02
VPS39-206ENST00000562662 FUSP35637 526 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS39-206ENST00000562662 GAGE2BQ13066 116 aa8.7□□□□□ -1.02
VPS39-206ENST00000562662 COL5A1-AS1Q5SY13 56 aa8.7□□□□□ -1.02
VPS39-206ENST00000562662 C16orf90A8MZG2 172 aa8.69□□□□□ -1.02
VPS39-206ENST00000562662 LINC01620Q4KN68 170 aa8.69□□□□□ -1.02
VPS39-206ENST00000562662 SDIM1Q6ZPB5 146 aa8.69□□□□□ -1.02
VPS39-206ENST00000562662 IGLV5-52A0A0A0MRZ9 124 aa8.68□□□□□ -1.02
VPS39-206ENST00000562662 TAX1BP3O14907 124 aa8.68□□□□□ -1.02
VPS39-206ENST00000562662 VPREB1P12018 145 aa8.68□□□□□ -1.02
VPS39-206ENST00000562662 KRTAP10-2P60368 255 aa8.68□□□□□ -1.02
VPS39-206ENST00000562662 RAB37Q96AX2 223 aa8.68□□□□□ -1.02
VPS39-206ENST00000562662 PKIGQ9Y2B9 76 aa8.68□□□□□ -1.02
VPS39-206ENST00000562662 PRR3P79522 188 aaKnown RBP8.67□□□□□ -1.02
VPS39-206ENST00000562662 LBHQ53QV2 105 aaPredicted RBP8.67□□□□□ -1.02
VPS39-206ENST00000562662 LINC00337Q8N6G1 96 aa8.67□□□□□ -1.02
VPS39-206ENST00000562662 PRO1854Q9UHT4 67 aa8.67□□□□□ -1.02
VPS39-206ENST00000562662 PLA2G2DQ9UNK4 145 aa8.67□□□□□ -1.02
VPS39-206ENST00000562662 RYR3Q15413 4870 aa8.66□□□□□ -1.02
VPS39-206ENST00000562662 SERTAD4-AS1Q5TG53 156 aa8.66□□□□□ -1.02
VPS39-206ENST00000562662 LINC00336Q6ZUF6 198 aa8.66□□□□□ -1.02
VPS39-206ENST00000562662 IGKV2-24A0A0C4DH68 120 aa8.65□□□□□ -1.02
VPS39-206ENST00000562662 FAM168BA1KXE4 195 aa8.65□□□□□ -1.02
VPS39-206ENST00000562662 NCR3O14931 201 aa8.65□□□□□ -1.02
VPS39-206ENST00000562662 CHTF8P0CG12 524 aa8.65□□□□□ -1.02
VPS39-206ENST00000562662 KRTAP7-1Q8IUC3 87 aa8.65□□□□□ -1.02
VPS39-206ENST00000562662 IGLV5-37A0A075B6J1 123 aa8.64□□□□□ -1.03
VPS39-206ENST00000562662 TRAV13-2A0A0B4J235 113 aa8.64□□□□□ -1.03
VPS39-206ENST00000562662 TRBV10-2A0A0K0K1G8 114 aa8.64□□□□□ -1.03
VPS39-206ENST00000562662 RPL13AP40429 203 aaKnown RBP8.64□□□□□ -1.03
VPS39-206ENST00000562662 PANO1I0J062 215 aa8.63□□□□□ -1.03
VPS39-206ENST00000562662 TSPAN13O95857 204 aa8.63□□□□□ -1.03
VPS39-206ENST00000562662 PGPEP1Q9NXJ5 209 aa8.63□□□□□ -1.03
VPS39-206ENST00000562662 PKHD1P08F94 4074 aa8.63□□□□□ -1.03
VPS39-206ENST00000562662 DYNC1H1Q14204 4646 aaKnown RBP8.62□□□□□ -1.03
VPS39-206ENST00000562662 C9orf118A6NHY6 69 aa8.62□□□□□ -1.03
VPS39-206ENST00000562662 A0A1W2PNN7 141 aa8.61□□□□□ -1.03
VPS39-206ENST00000562662 M0R378 163 aa8.61□□□□□ -1.03
VPS39-206ENST00000562662 FAM19A5Q7Z5A7 132 aaPredicted RBP8.61□□□□□ -1.03
VPS39-206ENST00000562662 SPACA4Q8TDM5 124 aa8.61□□□□□ -1.03
VPS39-206ENST00000562662 NAA38Q9BRA0 125 aaKnown RBP8.61□□□□□ -1.03
VPS39-206ENST00000562662 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.61□□□□□ -1.03
VPS39-206ENST00000562662 LRP1BQ9NZR2 4599 aa8.61□□□□□ -1.03
VPS39-206ENST00000562662 A0A1B0GVY2 172 aa8.6□□□□□ -1.03
VPS39-206ENST00000562662 H7C2G1 150 aa8.6□□□□□ -1.03
VPS39-206ENST00000562662 IGLV6-57P01721 117 aa8.6□□□□□ -1.03
VPS39-206ENST00000562662 NKAPP1Q8N9T2 125 aa8.6□□□□□ -1.03
VPS39-206ENST00000562662 OR13C6PQ8NH95 151 aa8.6□□□□□ -1.03
VPS39-206ENST00000562662 LINC00474Q9P2X8 69 aa8.6□□□□□ -1.03
VPS39-206ENST00000562662 H3BUT2 72 aa8.59□□□□□ -1.03
VPS39-206ENST00000562662 C7orf33Q8WU49 177 aa8.59□□□□□ -1.03
VPS39-206ENST00000562662 TMEM126AQ9H061 195 aa8.59□□□□□ -1.03
VPS39-206ENST00000562662 C22orf24Q9Y442 160 aa8.59□□□□□ -1.03
VPS39-206ENST00000562662 TRBV10-3A0A0K0K1G6 114 aa8.58□□□□□ -1.04
VPS39-206ENST00000562662 Q1RN00 199 aa8.58□□□□□ -1.04
VPS39-206ENST00000562662 S100A7L2Q5SY68 101 aa8.58□□□□□ -1.04
VPS39-206ENST00000562662 EPM2AB3EWF7 344 aa8.57□□□□□ -1.04
VPS39-206ENST00000562662 SMIM11BQ8TCY0 68 aa8.57□□□□□ -1.04
VPS39-206ENST00000562662 M0QXV9 152 aa8.56□□□□□ -1.04
VPS39-206ENST00000562662 TRIAP1O43715 76 aa8.56□□□□□ -1.04
VPS39-206ENST00000562662 RPL28P46779 137 aaKnown RBP8.56□□□□□ -1.04
VPS39-206ENST00000562662 KRTAP10-1P60331 282 aa8.56□□□□□ -1.04
VPS39-206ENST00000562662 MRPL55Q7Z7F7 128 aaKnown RBP8.56□□□□□ -1.04
VPS39-206ENST00000562662 LINC00167Q96N53 147 aa8.56□□□□□ -1.04
VPS39-206ENST00000562662 A0A1W2PPM0 123 aa8.55□□□□□ -1.04
VPS39-206ENST00000562662 GAGE10A6NGK3 116 aa8.55□□□□□ -1.04
VPS39-206ENST00000562662 A0A087WYN8 130 aa8.54□□□□□ -1.04
VPS39-206ENST00000562662 IGLV1-50A0A075B6I6 118 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 TRAV23DV6A0A075B6W5 121 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 A0A1B0GV90 55 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 PSMB2P49721 201 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 Q6ZSA8 131 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 PHF5AQ7RTV0 110 aaKnown RBP8.53□□□□□ -1.04
VPS39-206ENST00000562662 PLAC8Q9NZF1 115 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 FAM30AQ9NZY2 134 aa8.53□□□□□ -1.04
VPS39-206ENST00000562662 DPH3Q96FX2 82 aa8.52□□□□□ -1.05
VPS39-206ENST00000562662 KCNQ1DNQ9H478 68 aa8.52□□□□□ -1.05
VPS39-206ENST00000562662 RPL37AP8A6NKH3 93 aa8.51□□□□□ -1.05
VPS39-206ENST00000562662 FABP2P12104 132 aa8.51□□□□□ -1.05
VPS39-206ENST00000562662 APOBP04114 4563 aaKnown RBP8.5□□□□□ -1.05
VPS39-206ENST00000562662 PRYO14603 147 aa8.5□□□□□ -1.05
VPS39-206ENST00000562662 CBY1Q9Y3M2 126 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms