RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 HIST1H4AP62805 103 aaKnown RBP6.31□□□□□ -1.4
VPS39-205ENST00000562258 SLPIP03973 132 aa6.31□□□□□ -1.4
VPS39-205ENST00000562258 ORMDL1Q9P0S3 153 aa6.31□□□□□ -1.4
VPS39-205ENST00000562258 TRBV20-1A0A075B6N2 111 aa6.31□□□□□ -1.4
VPS39-205ENST00000562258 IGHV3OR16-9A0A0B4J2B5 98 aa6.3□□□□□ -1.4
VPS39-205ENST00000562258 H0YGX0 51 aa6.3□□□□□ -1.4
VPS39-205ENST00000562258 C3orf84H3BNL1 204 aa6.3□□□□□ -1.4
VPS39-205ENST00000562258 TSPEAR-AS2P59090 65 aa6.3□□□□□ -1.4
VPS39-205ENST00000562258 ENHOQ6UWT2 76 aa6.3□□□□□ -1.4
VPS39-205ENST00000562258 WFDC2Q14508 124 aa6.29□□□□□ -1.4
VPS39-205ENST00000562258 ANAPC13Q9BS18 74 aa6.29□□□□□ -1.4
VPS39-205ENST00000562258 NTN5Q8WTR8 489 aaPredicted RBP6.29□□□□□ -1.4
VPS39-205ENST00000562258 hADV29S1A0JD25 119 aa6.29□□□□□ -1.4
VPS39-205ENST00000562258 HIGD1BQ9P298 99 aa6.29□□□□□ -1.4
VPS39-205ENST00000562258 LINC00474Q9P2X8 69 aa6.28□□□□□ -1.4
VPS39-205ENST00000562258 NDUFC2-KCTD14E9PQ53 114 aa6.28□□□□□ -1.4
VPS39-205ENST00000562258 CHTF8P0CG12 524 aa6.28□□□□□ -1.4
VPS39-205ENST00000562258 C10orf25Q5T742 122 aa6.28□□□□□ -1.4
VPS39-205ENST00000562258 C1orf137Q5JT78 98 aa6.27□□□□□ -1.41
VPS39-205ENST00000562258 SPANXB1Q9NS25 103 aaPredicted RBP6.27□□□□□ -1.41
VPS39-205ENST00000562258 VWFP04275 2813 aa6.27□□□□□ -1.41
VPS39-205ENST00000562258 TRAV23DV6A0A075B6W5 121 aa6.27□□□□□ -1.41
VPS39-205ENST00000562258 M0R378 163 aa6.27□□□□□ -1.41
VPS39-205ENST00000562258 HRCT1Q6UXD1 115 aa6.27□□□□□ -1.41
VPS39-205ENST00000562258 SPANXDQ9BXN6 97 aa6.27□□□□□ -1.41
VPS39-205ENST00000562258 TRBV30A0A0K0K1B3 111 aa6.26□□□□□ -1.41
VPS39-205ENST00000562258 TRBV10-3A0A0K0K1G6 114 aa6.26□□□□□ -1.41
VPS39-205ENST00000562258 ADAMTSL4-AS1Q5T5F5 129 aa6.26□□□□□ -1.41
VPS39-205ENST00000562258 IGLV9-49A0A0B4J1Y8 123 aa6.26□□□□□ -1.41
VPS39-205ENST00000562258 WIPF1O43516 503 aa6.26□□□□□ -1.41
VPS39-205ENST00000562258 Q6ZQY7 126 aa6.25□□□□□ -1.41
VPS39-205ENST00000562258 SVEP1Q4LDE5 3571 aa6.25□□□□□ -1.41
VPS39-205ENST00000562258 TRACP01848 142 aa6.25□□□□□ -1.41
VPS39-205ENST00000562258 ANKRD29Q8N6D5 301 aa6.25□□□□□ -1.41
VPS39-205ENST00000562258 RTL8CO15255 209 aa6.25□□□□□ -1.41
VPS39-205ENST00000562258 INAFM2P0DMQ5 153 aa6.25□□□□□ -1.41
VPS39-205ENST00000562258 SPINK6Q6UWN8 80 aa6.24□□□□□ -1.41
VPS39-205ENST00000562258 F8W1H4 67 aa6.24□□□□□ -1.41
VPS39-205ENST00000562258 APLNQ9ULZ1 77 aa6.24□□□□□ -1.41
VPS39-205ENST00000562258 ZNF73O43830 326 aaPredicted RBP6.23□□□□□ -1.41
VPS39-205ENST00000562258 PRLHP81277 87 aa6.23□□□□□ -1.41
VPS39-205ENST00000562258 C2orf48Q96LS8 159 aa6.23□□□□□ -1.41
VPS39-205ENST00000562258 CASC10Q5T4H9 136 aa6.23□□□□□ -1.41
VPS39-205ENST00000562258 SPENQ96T58 3664 aaKnown RBP6.23□□□□□ -1.41
VPS39-205ENST00000562258 SMR3BP02814 79 aaPredicted RBP6.22□□□□□ -1.41
VPS39-205ENST00000562258 COX17Q14061 63 aa6.22□□□□□ -1.41
VPS39-205ENST00000562258 SMIM11BQ8TCY0 68 aa6.22□□□□□ -1.41
VPS39-205ENST00000562258 UBL5Q9BZL1 73 aa6.22□□□□□ -1.41
VPS39-205ENST00000562258 C6orf48Q9UBA6 75 aa6.22□□□□□ -1.41
VPS39-205ENST00000562258 NDUFS5O43920 106 aa6.22□□□□□ -1.41
VPS39-205ENST00000562258 MRPL55Q7Z7F7 128 aaKnown RBP6.21□□□□□ -1.41
VPS39-205ENST00000562258 LINC00612Q8N6U2 182 aa6.21□□□□□ -1.41
VPS39-205ENST00000562258 PPDPFLQ8WWR9 84 aa6.21□□□□□ -1.41
VPS39-205ENST00000562258 TENM2Q9NT68 2774 aa6.21□□□□□ -1.41
VPS39-205ENST00000562258 TRIAP1O43715 76 aa6.21□□□□□ -1.42
VPS39-205ENST00000562258 C2orf91Q6ZV80 131 aa6.21□□□□□ -1.42
VPS39-205ENST00000562258 C22orf24Q9Y442 160 aa6.21□□□□□ -1.42
VPS39-205ENST00000562258 RBM3P98179 157 aaKnown RBP6.2□□□□□ -1.42
VPS39-205ENST00000562258 RPL28P46779 137 aaKnown RBP6.2□□□□□ -1.42
VPS39-205ENST00000562258 XGP55808 180 aa6.2□□□□□ -1.42
VPS39-205ENST00000562258 LINC00476Q8WZB0 136 aa6.19□□□□□ -1.42
VPS39-205ENST00000562258 TIMM17BO60830 172 aa6.19□□□□□ -1.42
VPS39-205ENST00000562258 TCL1BO95988 128 aa6.19□□□□□ -1.42
VPS39-205ENST00000562258 A0A0B4J2C4 111 aa6.19□□□□□ -1.42
VPS39-205ENST00000562258 PHF5AQ7RTV0 110 aaKnown RBP6.19□□□□□ -1.42
VPS39-205ENST00000562258 C14orf132Q9NPU4 83 aa6.19□□□□□ -1.42
VPS39-205ENST00000562258 REG3GQ6UW15 175 aa6.18□□□□□ -1.42
VPS39-205ENST00000562258 FLG2Q5D862 2391 aaPredicted RBP6.18□□□□□ -1.42
VPS39-205ENST00000562258 NREPQ16612 68 aa6.18□□□□□ -1.42
VPS39-205ENST00000562258 CIRBP-AS1Q8TBR5 109 aa6.18□□□□□ -1.42
VPS39-205ENST00000562258 H0Y9J4 135 aa6.17□□□□□ -1.42
VPS39-205ENST00000562258 TMEM256-PLSCR3K7ERE1 68 aa6.17□□□□□ -1.42
VPS39-205ENST00000562258 A0A087WTM6 91 aa6.16□□□□□ -1.42
VPS39-205ENST00000562258 IGLV5-39A0A0G2JS06 123 aa6.16□□□□□ -1.42
VPS39-205ENST00000562258 TNP2Q05952 138 aa6.16□□□□□ -1.42
VPS39-205ENST00000562258 LINC00167Q96N53 147 aa6.16□□□□□ -1.42
VPS39-205ENST00000562258 A0A087WYN8 130 aa6.16□□□□□ -1.42
VPS39-205ENST00000562258 FAM229AH3BQW9 127 aa6.16□□□□□ -1.42
VPS39-205ENST00000562258 SRRM2Q9UQ35 2752 aaKnown RBP6.15□□□□□ -1.42
VPS39-205ENST00000562258 FAM168BA1KXE4 195 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 Q6ZRP5 223 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 ZNF575Q86XF7 245 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 NDUFB1O75438 58 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 CCKP06307 115 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 LINC00337Q8N6G1 96 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 DHRS4-AS1Q9P1J3 65 aa6.14□□□□□ -1.43
VPS39-205ENST00000562258 IGKV3D-7A0A0C4DH55 119 aa6.13□□□□□ -1.43
VPS39-205ENST00000562258 PRR34Q9NV39 138 aa6.13□□□□□ -1.43
VPS39-205ENST00000562258 TRBV10-2A0A0K0K1G8 114 aa6.13□□□□□ -1.43
VPS39-205ENST00000562258 JMJD7-PLA2G4BH0Y9G9 81 aa6.13□□□□□ -1.43
VPS39-205ENST00000562258 TEN1Q86WV5 123 aa6.13□□□□□ -1.43
VPS39-205ENST00000562258 SVIPQ8NHG7 77 aa6.13□□□□□ -1.43
VPS39-205ENST00000562258 SCXQ7RTU7 201 aa6.12□□□□□ -1.43
VPS39-205ENST00000562258 UPK3BQ9BT76 320 aa6.12□□□□□ -1.43
VPS39-205ENST00000562258 ZNF706Q9Y5V0 76 aaPredicted RBP6.12□□□□□ -1.43
VPS39-205ENST00000562258 GVQW2A0A096LPI5 108 aaPredicted RBP6.11□□□□□ -1.43
VPS39-205ENST00000562258 LINC01561Q8N1V8 128 aa6.11□□□□□ -1.43
VPS39-205ENST00000562258 SS18L2Q9UHA2 77 aa6.11□□□□□ -1.43
VPS39-205ENST00000562258 IGLV5-45A0A087WSX0 123 aa6.1□□□□□ -1.43
VPS39-205ENST00000562258 TEX49A0A1B0GTD5 131 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms