RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 TMEM223A0PJW6 202 aa6.72□□□□□ -1.33
TPM1-227ENST00000560970 LINC01561Q8N1V8 128 aa6.72□□□□□ -1.33
TPM1-227ENST00000560970 CDKN2A-AS1Q9UH64 79 aa6.72□□□□□ -1.33
TPM1-227ENST00000560970 IGLV5-45A0A087WSX0 123 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 MYMXA0A1B0GTQ4 84 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 HERVK_113P63121 156 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 HSD52Q0P140 79 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 UNQ6190/PRO20217Q6UXQ8 127 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 PLEKHB2Q96CS7 222 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 LINC01600Q96MT4 127 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 GEMIN7Q9H840 131 aaKnown RBP6.71□□□□□ -1.34
TPM1-227ENST00000560970 C6orf48Q9UBA6 75 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 TP73-AS1Q9UF72 201 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 PKIGQ9Y2B9 76 aa6.71□□□□□ -1.34
TPM1-227ENST00000560970 LOC107984640A0A0U1RRK4 108 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 H3BRM9 83 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 NDUFA1O15239 70 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 LEPROTO15243 131 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 PTTG1IPP53801 180 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 C2orf82Q6UX34 121 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 LINC00469Q8N7U9 141 aa6.7□□□□□ -1.34
TPM1-227ENST00000560970 SMIM1B2RUZ4 78 aa6.69□□□□□ -1.34
TPM1-227ENST00000560970 LGALS3P17931 250 aaKnown RBP6.69□□□□□ -1.34
TPM1-227ENST00000560970 RPL18AQ02543 176 aaKnown RBP6.69□□□□□ -1.34
TPM1-227ENST00000560970 GAGE2BQ13066 116 aa6.69□□□□□ -1.34
TPM1-227ENST00000560970 TAL2Q16559 108 aa6.69□□□□□ -1.34
TPM1-227ENST00000560970 COL5A1-AS1Q5SY13 56 aa6.69□□□□□ -1.34
TPM1-227ENST00000560970 TOMM7Q9P0U1 55 aa6.69□□□□□ -1.34
TPM1-227ENST00000560970 RNF213Q63HN8 5207 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 ZNF815PA8K554 130 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 F8WDY8 70 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 J3QQQ9 107 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 HINT1P49773 126 aaPredicted RBP6.68□□□□□ -1.34
TPM1-227ENST00000560970 BATFQ16520 125 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 RNF151Q2KHN1 245 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 BVES-AS1Q5T3Y7 98 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 Q8IZM0 81 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 TTTY13Q9BZ97 58 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 LINC00474Q9P2X8 69 aa6.68□□□□□ -1.34
TPM1-227ENST00000560970 SPINK8P0C7L1 97 aa6.67□□□□□ -1.34
TPM1-227ENST00000560970 C9orf116Q5BN46 136 aaPredicted RBP6.67□□□□□ -1.34
TPM1-227ENST00000560970 REG3GQ6UW15 175 aa6.67□□□□□ -1.34
TPM1-227ENST00000560970 Q6ZRP5 223 aa6.67□□□□□ -1.34
TPM1-227ENST00000560970 A0A1W2PNN7 141 aa6.66□□□□□ -1.34
TPM1-227ENST00000560970 TLX1NBP0CAT3 122 aa6.66□□□□□ -1.34
TPM1-227ENST00000560970 TSPEAR-AS2P59090 65 aa6.66□□□□□ -1.34
TPM1-227ENST00000560970 SPINK6Q6UWN8 80 aa6.66□□□□□ -1.34
TPM1-227ENST00000560970 IGLV5-39A0A0G2JS06 123 aa6.65□□□□□ -1.34
TPM1-227ENST00000560970 TRBV30A0A0K0K1B3 111 aa6.65□□□□□ -1.34
TPM1-227ENST00000560970 PRSS2P07478 247 aa6.65□□□□□ -1.34
TPM1-227ENST00000560970 SCGB1D4Q6XE38 83 aa6.65□□□□□ -1.34
TPM1-227ENST00000560970 A6NDN8 102 aa6.64□□□□□ -1.35
TPM1-227ENST00000560970 C6orf226Q5I0X4 101 aa6.64□□□□□ -1.35
TPM1-227ENST00000560970 COX7B2Q8TF08 81 aa6.64□□□□□ -1.35
TPM1-227ENST00000560970 SPANXB1Q9NS25 103 aaPredicted RBP6.64□□□□□ -1.35
TPM1-227ENST00000560970 FAM168BA1KXE4 195 aa6.63□□□□□ -1.35
TPM1-227ENST00000560970 CKS1BP61024 79 aa6.63□□□□□ -1.35
TPM1-227ENST00000560970 GAGE2EQ4V326 116 aa6.63□□□□□ -1.35
TPM1-227ENST00000560970 GAGE2DQ9UEU5 116 aa6.63□□□□□ -1.35
TPM1-227ENST00000560970 NDUFC2-KCTD14E9PQ53 114 aa6.62□□□□□ -1.35
TPM1-227ENST00000560970 CXCL5P42830 114 aa6.62□□□□□ -1.35
TPM1-227ENST00000560970 C9orf129Q5T035 196 aaKnown RBP6.62□□□□□ -1.35
TPM1-227ENST00000560970 KRTAP7-1Q8IUC3 87 aa6.62□□□□□ -1.35
TPM1-227ENST00000560970 CEND1Q8N111 149 aa6.62□□□□□ -1.35
TPM1-227ENST00000560970 HIST1H4GQ99525 98 aa6.62□□□□□ -1.35
TPM1-227ENST00000560970 NDUFA12Q9UI09 145 aa6.62□□□□□ -1.35
TPM1-227ENST00000560970 TMEM238C9JI98 176 aa6.61□□□□□ -1.35
TPM1-227ENST00000560970 KRTAP10-8P60410 259 aa6.61□□□□□ -1.35
TPM1-227ENST00000560970 PHF5AQ7RTV0 110 aaKnown RBP6.61□□□□□ -1.35
TPM1-227ENST00000560970 CDIP1Q9H305 208 aa6.61□□□□□ -1.35
TPM1-227ENST00000560970 A0A0J9YXY3 114 aa6.6□□□□□ -1.35
TPM1-227ENST00000560970 A0A1B0GV90 55 aa6.6□□□□□ -1.35
TPM1-227ENST00000560970 TIMM17BO60830 172 aa6.6□□□□□ -1.35
TPM1-227ENST00000560970 FAM19A5Q7Z5A7 132 aaPredicted RBP6.6□□□□□ -1.35
TPM1-227ENST00000560970 FXYD2P54710 66 aa6.59□□□□□ -1.35
TPM1-227ENST00000560970 HERV-K104P63124 156 aa6.59□□□□□ -1.35
TPM1-227ENST00000560970 SRSF9Q13242 221 aaKnown RBP eCLIP6.59□□□□□ -1.35
TPM1-227ENST00000560970 SFTA2Q6UW10 78 aa6.59□□□□□ -1.35
TPM1-227ENST00000560970 Q6ZVH6 145 aa6.59□□□□□ -1.35
TPM1-227ENST00000560970 H3BS24 57 aa6.58□□□□□ -1.36
TPM1-227ENST00000560970 KRTAP11-1Q8IUC1 163 aa6.58□□□□□ -1.36
TPM1-227ENST00000560970 ZNF625Q96I27 306 aaPredicted RBP6.58□□□□□ -1.36
TPM1-227ENST00000560970 SPANXDQ9BXN6 97 aa6.58□□□□□ -1.36
TPM1-227ENST00000560970 XAGE1AQ9HD64 81 aa6.58□□□□□ -1.36
TPM1-227ENST00000560970 SPANXCQ9NY87 97 aa6.58□□□□□ -1.36
TPM1-227ENST00000560970 A0A1B0GWB2 263 aa6.57□□□□□ -1.36
TPM1-227ENST00000560970 TAX1BP3O14907 124 aa6.57□□□□□ -1.36
TPM1-227ENST00000560970 SMIM13P0DJ93 91 aa6.57□□□□□ -1.36
TPM1-227ENST00000560970 LITAFQ99732 161 aa6.57□□□□□ -1.36
TPM1-227ENST00000560970 LPAP08519 4548 aa6.57□□□□□ -1.36
TPM1-227ENST00000560970 M0QXV9 152 aa6.56□□□□□ -1.36
TPM1-227ENST00000560970 IFITM1P13164 125 aa6.55□□□□□ -1.36
TPM1-227ENST00000560970 RPL24P83731 157 aaKnown RBP6.55□□□□□ -1.36
TPM1-227ENST00000560970 COPS9Q8WXC6 57 aa6.55□□□□□ -1.36
TPM1-227ENST00000560970 PPDPFQ9H3Y8 114 aa6.55□□□□□ -1.36
TPM1-227ENST00000560970 NHP2Q9NX24 153 aaKnown RBP6.55□□□□□ -1.36
TPM1-227ENST00000560970 PSORS1C2Q9UIG4 136 aa6.55□□□□□ -1.36
TPM1-227ENST00000560970 C9orf118A6NHY6 69 aa6.54□□□□□ -1.36
TPM1-227ENST00000560970 PFN2P35080 140 aa6.53□□□□□ -1.36
TPM1-227ENST00000560970 ERG28Q9UKR5 140 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms