RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TOMM7Q9P0U1 55 aa7.48□□□□□ -1.21
USP3-218ENST00000560202 NDUFA12Q9UI09 145 aa7.48□□□□□ -1.21
USP3-218ENST00000560202 Q1RN00 199 aa7.47□□□□□ -1.21
USP3-218ENST00000560202 NDUFA1O15239 70 aa7.46□□□□□ -1.22
USP3-218ENST00000560202 PRSS2P07478 247 aa7.46□□□□□ -1.22
USP3-218ENST00000560202 C6orf226Q5I0X4 101 aa7.46□□□□□ -1.22
USP3-218ENST00000560202 Q8IZM0 81 aa7.46□□□□□ -1.22
USP3-218ENST00000560202 LY6G6CO95867 125 aa7.45□□□□□ -1.22
USP3-218ENST00000560202 KIAA0087Q14695 138 aa7.45□□□□□ -1.22
USP3-218ENST00000560202 MUSTN1Q8IVN3 82 aa7.45□□□□□ -1.22
USP3-218ENST00000560202 ZNF625Q96I27 306 aaPredicted RBP7.45□□□□□ -1.22
USP3-218ENST00000560202 A0A0J9YXY3 114 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 TEX49A0A1B0GTD5 131 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 TIMM17BO60830 172 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 CXCL5P42830 114 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 LINC00476Q8WZB0 136 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 A0A1B0GX51 115 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 LST1O00453 97 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 UQCRQO14949 82 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 TRIAP1O43715 76 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 SPAG11BQ08648 103 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 C15orf56Q8N910 161 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 COPS9Q8WXC6 57 aa7.44□□□□□ -1.22
USP3-218ENST00000560202 M0R2N4 97 aa7.43□□□□□ -1.22
USP3-218ENST00000560202 LINC00643Q86TS7 51 aa7.43□□□□□ -1.22
USP3-218ENST00000560202 HIGD2BQ4VC39 106 aa7.42□□□□□ -1.22
USP3-218ENST00000560202 LINC00526Q96FQ7 95 aa7.42□□□□□ -1.22
USP3-218ENST00000560202 ALMS1Q8TCU4 4167 aa7.42□□□□□ -1.22
USP3-218ENST00000560202 ZNF561-AS1K7EIQ3 104 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 EIF4EBP3O60516 100 aaPredicted RBP7.41□□□□□ -1.22
USP3-218ENST00000560202 RPS28P62857 69 aaKnown RBP7.41□□□□□ -1.22
USP3-218ENST00000560202 Q6ZR54 194 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 C6orf223Q8N319 242 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 C3orf22Q8N5N4 141 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 DNAH10Q8IVF4 4471 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 GVQW2A0A096LPI5 108 aaPredicted RBP7.41□□□□□ -1.22
USP3-218ENST00000560202 PSCAO43653 123 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 PPDPFQ9H3Y8 114 aa7.41□□□□□ -1.22
USP3-218ENST00000560202 USP17L23D6RBM5 183 aa7.4□□□□□ -1.23
USP3-218ENST00000560202 C5orf47Q569G3 176 aa7.4□□□□□ -1.23
USP3-218ENST00000560202 SDIM1Q6ZPB5 146 aa7.4□□□□□ -1.23
USP3-218ENST00000560202 LITAFQ99732 161 aa7.4□□□□□ -1.23
USP3-218ENST00000560202 H7C2G1 150 aa7.39□□□□□ -1.23
USP3-218ENST00000560202 J3KT08 172 aa7.39□□□□□ -1.23
USP3-218ENST00000560202 CIRBPQ14011 172 aaKnown RBP7.39□□□□□ -1.23
USP3-218ENST00000560202 LECT2O14960 151 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 ADAMTSL4-AS1Q5T5F5 129 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 C10orf25Q5T742 122 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 C9orf153Q5TBE3 101 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 UNQ6190/PRO20217Q6UXQ8 127 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 Q6ZRN7 208 aaPredicted RBP7.38□□□□□ -1.23
USP3-218ENST00000560202 DAND5Q8N907 189 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 C2orf48Q96LS8 159 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 A0A0U1RRA0 63 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 CAMK2N2Q96S95 79 aa7.38□□□□□ -1.23
USP3-218ENST00000560202 DNAH2Q9P225 4427 aa7.37□□□□□ -1.23
USP3-218ENST00000560202 DNAH6Q9C0G6 4158 aa7.37□□□□□ -1.23
USP3-218ENST00000560202 F8WDY8 70 aa7.37□□□□□ -1.23
USP3-218ENST00000560202 INAFM2P0DMQ5 153 aa7.37□□□□□ -1.23
USP3-218ENST00000560202 KMT2AQ03164 3969 aa7.36□□□□□ -1.23
USP3-218ENST00000560202 FAM236AA0A1B0GUQ0 79 aa7.36□□□□□ -1.23
USP3-218ENST00000560202 FAM236BA0A1B0GV22 79 aa7.36□□□□□ -1.23
USP3-218ENST00000560202 TRACP01848 142 aa7.36□□□□□ -1.23
USP3-218ENST00000560202 PFN2P35080 140 aa7.36□□□□□ -1.23
USP3-218ENST00000560202 LINC00158P58513 81 aa7.36□□□□□ -1.23
USP3-218ENST00000560202 ATOX1O00244 68 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 CRYGAP11844 174 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 C9orf116Q5BN46 136 aaPredicted RBP7.35□□□□□ -1.23
USP3-218ENST00000560202 Q6ZRU5 148 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 C6orf48Q9UBA6 75 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 COX7CP15954 63 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 SYCNQ0VAF6 134 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 COX17Q14061 63 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 C1orf134Q5TEV5 83 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 OR13C6PQ8NH95 151 aa7.35□□□□□ -1.23
USP3-218ENST00000560202 LRCOL1A6NCL2 159 aa7.34□□□□□ -1.23
USP3-218ENST00000560202 SLPIP03973 132 aa7.34□□□□□ -1.23
USP3-218ENST00000560202 MIR7-3HGQ8N6C7 128 aa7.34□□□□□ -1.23
USP3-218ENST00000560202 NPC2P61916 151 aa7.33□□□□□ -1.24
USP3-218ENST00000560202 C14orf177Q52M58 125 aa7.33□□□□□ -1.24
USP3-218ENST00000560202 SACSQ9NZJ4 4579 aa7.32□□□□□ -1.24
USP3-218ENST00000560202 LINC00308Q8TCZ7 52 aa7.32□□□□□ -1.24
USP3-218ENST00000560202 HIST1H4AP62805 103 aaKnown RBP7.32□□□□□ -1.24
USP3-218ENST00000560202 SOSTDC1Q6X4U4 206 aa7.32□□□□□ -1.24
USP3-218ENST00000560202 HYDINQ4G0P3 5121 aa7.31□□□□□ -1.24
USP3-218ENST00000560202 TMEM258P61165 79 aa7.31□□□□□ -1.24
USP3-218ENST00000560202 GAGE2AQ6NT46 116 aa7.31□□□□□ -1.24
USP3-218ENST00000560202 CLEC2BQ92478 149 aa7.31□□□□□ -1.24
USP3-218ENST00000560202 A0A087WTM6 91 aa7.3□□□□□ -1.24
USP3-218ENST00000560202 LCE6AA0A183 80 aa7.3□□□□□ -1.24
USP3-218ENST00000560202 CNBPP62633 177 aaKnown RBP7.3□□□□□ -1.24
USP3-218ENST00000560202 DNAH17Q9UFH2 4485 aa7.3□□□□□ -1.24
USP3-218ENST00000560202 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.29□□□□□ -1.24
USP3-218ENST00000560202 NDUFC2-KCTD14E9PQ53 114 aa7.29□□□□□ -1.24
USP3-218ENST00000560202 Q8N814 137 aa7.28□□□□□ -1.24
USP3-218ENST00000560202 SND1-IT1Q9HBX3 110 aa7.28□□□□□ -1.24
USP3-218ENST00000560202 TLX1NBP0CAT3 122 aa7.27□□□□□ -1.25
USP3-218ENST00000560202 Q6ZRP5 223 aa7.27□□□□□ -1.25
USP3-218ENST00000560202 RTL8CO15255 209 aa7.26□□□□□ -1.25
USP3-218ENST00000560202 BAALC-AS2P0C853 105 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms