RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CTXND1A0A1B0GTU2 59 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 CRYM-AS1A6NIL9 109 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 FAM223BA6NKX1 122 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 F8VRH5 84 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 H3BQ15 152 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 H7BZZ5 65 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 ZZEF1O43149 2961 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 SFT2D2O95562 160 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 APOC3P02656 99 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 IGLC1P0CG04 106 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 KRTAP19-6Q3LI70 58 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 COL5A1-AS1Q5SY13 56 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 BAGE2Q86Y30 109 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 FDCSPQ8NFU4 85 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 LCN9Q8WX39 176 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 FAM167A-AS1Q96KT0 104 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 SPRR4Q96PI1 79 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 PMCHL2Q9BQD1 86 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 C20orf78Q9BR46 151 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 MANBALQ9NQG1 85 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 R4GMQ9 66 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 ARL2-SNX15V9GYD0 113 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 V9GYH0 126 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 ANKRD36A6QL64 1941 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 MYH4Q9Y623 1939 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 MON2Q7Z3U7 1717 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 SMG1Q96Q15 3661 aaKnown RBP0.12□□□□□ -2.39
USP3-209ENST00000558925 TOP2BQ02880 1626 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 PRDM15P57071 1507 aaPredicted RBP0.12□□□□□ -2.39
USP3-209ENST00000558925 LRRC7Q96NW7 1537 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 NSD3Q9BZ95 1437 aa0.12□□□□□ -2.39
USP3-209ENST00000558925 LAMA5O15230 3695 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 SPENQ96T58 3664 aaKnown RBP0.11□□□□□ -2.39
USP3-209ENST00000558925 MUC12Q9UKN1 5478 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 PLEKHH2Q8IVE3 1493 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TEX14Q8IWB6 1497 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 WNK2Q9Y3S1 2297 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 UBR1Q8IWV7 1749 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 KIAA1551Q9HCM1 1747 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 NBPF19A0A087WUL8 3843 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 PIGBOS1A0A0B4J2F0 54 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 NAP1L6A6NFF2 107 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 UQCR11O14957 56 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 BCE1O60756 84 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TRAPPC2P0DI81 140 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TRAPPC2BP0DI82 140 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 FAUP35544 74 aaKnown RBP0.11□□□□□ -2.39
USP3-209ENST00000558925 MT4P47944 62 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TDRG1Q3Y452 100 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TMEM170BQ5T4T1 132 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 C10orf113Q5VZT2 155 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 Q6JHZ5 121 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 C9orf62Q8N4C0 152 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 SERP2Q8N6R1 65 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TRGV9Q99603 122 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 DPY30Q9C005 99 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 PRO1933Q9H354 126 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 NXT2Q9NPJ8 142 aaKnown RBP0.11□□□□□ -2.39
USP3-209ENST00000558925 FAIMQ9NVQ4 179 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 HIGD1BQ9P298 99 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 CACFD1Q9UGQ2 172 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 PRO1854Q9UHT4 67 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 AP4S1Q9Y587 144 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 LRP6O75581 1613 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 KNL1Q8NG31 2342 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 EHBP1L1Q8N3D4 1523 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 RGPD3A6NKT7 1758 aaPredicted RBP0.11□□□□□ -2.39
USP3-209ENST00000558925 RGPD4Q7Z3J3 1758 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 PAPPA2Q9BXP8 1791 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 PPRC1Q5VV67 1664 aaKnown RBP0.11□□□□□ -2.39
USP3-209ENST00000558925 PKDREJQ9NTG1 2253 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 UNC13BO14795 1591 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 TTC37Q6PGP7 1564 aa0.11□□□□□ -2.39
USP3-209ENST00000558925 BAZ1AQ9NRL2 1556 aaPredicted RBP0.11□□□□□ -2.39
USP3-209ENST00000558925 GAPVD1Q14C86 1478 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 MLH3Q9UHC1 1453 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 RAPGEF2Q9Y4G8 1499 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 NUP188Q5SRE5 1749 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 KNDC1Q76NI1 1749 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 TRBV25-1A0A075B6N4 114 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 A0A087WVE0 104 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 TRBV7-7A0A0K0K1E9 115 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 LOC285095A0A1B0GVY8 99 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 C7orf77A4D0Y5 90 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 F8WEM9 126 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 SYS1-DBNDD2H3BUS1 97 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 I3L2K1 104 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 SPINK1P00995 79 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 COX6CP09669 75 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 LINC00032P0C843 101 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 KRTDAPP60985 99 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 Q5BKY6 102 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 SMIM4Q8WVI0 70 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 LINC01600Q96MT4 127 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 VAMP8Q9BV40 100 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 PRO3102Q9H379 93 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 PSENENQ9NZ42 101 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 CRIPTQ9P021 101 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 UQCR10Q9UDW1 63 aa0.1□□□□□ -2.39
USP3-209ENST00000558925 DIP2CQ9Y2E4 1556 aa0.1□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms