RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 HERV-K104P63124 156 aa2.58□□□□□ -2
SPG11-211ENST00000558561 ORMDL2Q53FV1 153 aa2.58□□□□□ -2
SPG11-211ENST00000558561 TEX43Q6ZNM6 134 aa2.58□□□□□ -2
SPG11-211ENST00000558561 ERASQ7Z444 233 aa2.58□□□□□ -2
SPG11-211ENST00000558561 FAM19A3Q7Z5A8 133 aa2.58□□□□□ -2
SPG11-211ENST00000558561 NXT2Q9NPJ8 142 aaKnown RBP2.58□□□□□ -2
SPG11-211ENST00000558561 LAMTOR2Q9Y2Q5 125 aa2.58□□□□□ -2
SPG11-211ENST00000558561 APOMO95445 188 aa2.57□□□□□ -2
SPG11-211ENST00000558561 NDUFA6P56556 154 aa2.57□□□□□ -2
SPG11-211ENST00000558561 RPL18AQ02543 176 aaKnown RBP2.57□□□□□ -2
SPG11-211ENST00000558561 RHEBQ15382 184 aa2.57□□□□□ -2
SPG11-211ENST00000558561 PDZD11Q5EBL8 140 aa2.57□□□□□ -2
SPG11-211ENST00000558561 FA2HQ7L5A8 372 aa2.57□□□□□ -2
SPG11-211ENST00000558561 Q8NDZ9 215 aa2.57□□□□□ -2
SPG11-211ENST00000558561 XAGE1AQ9HD64 81 aa2.57□□□□□ -2
SPG11-211ENST00000558561 MRPL35Q9NZE8 188 aaKnown RBP2.57□□□□□ -2
SPG11-211ENST00000558561 PSORS1C2Q9UIG4 136 aa2.57□□□□□ -2
SPG11-211ENST00000558561 C11orf86A6NJI1 115 aa2.56□□□□□ -2
SPG11-211ENST00000558561 NDUFA1O15239 70 aa2.56□□□□□ -2
SPG11-211ENST00000558561 SNAPINO95295 136 aa2.56□□□□□ -2
SPG11-211ENST00000558561 KRTAP10-8P60410 259 aa2.56□□□□□ -2
SPG11-211ENST00000558561 PRR3P79522 188 aaKnown RBP2.56□□□□□ -2
SPG11-211ENST00000558561 C6orf226Q5I0X4 101 aa2.56□□□□□ -2
SPG11-211ENST00000558561 Q6ZN92 141 aa2.56□□□□□ -2
SPG11-211ENST00000558561 FAM19A5Q7Z5A7 132 aaPredicted RBP2.56□□□□□ -2
SPG11-211ENST00000558561 LINC00518Q8N0U6 118 aa2.56□□□□□ -2
SPG11-211ENST00000558561 SVBPQ8N300 66 aa2.56□□□□□ -2
SPG11-211ENST00000558561 OR10D4PQ8NGN7 298 aa2.56□□□□□ -2
SPG11-211ENST00000558561 ZNF625Q96I27 306 aaPredicted RBP2.56□□□□□ -2
SPG11-211ENST00000558561 TIMM17AQ99595 171 aa2.56□□□□□ -2
SPG11-211ENST00000558561 A0A0U1RRA0 63 aa2.55□□□□□ -2
SPG11-211ENST00000558561 TINCRA0A1B0GVN0 87 aa2.55□□□□□ -2
SPG11-211ENST00000558561 TLX1NBP0CAT3 122 aa2.55□□□□□ -2
SPG11-211ENST00000558561 ZNF22P17026 224 aaPredicted RBP2.55□□□□□ -2
SPG11-211ENST00000558561 SMAGPQ0VAQ4 97 aa2.55□□□□□ -2
SPG11-211ENST00000558561 PMVKQ15126 192 aa2.55□□□□□ -2
SPG11-211ENST00000558561 Q1RN00 199 aa2.55□□□□□ -2
SPG11-211ENST00000558561 BAGE3Q86Y29 109 aa2.55□□□□□ -2
SPG11-211ENST00000558561 COX7B2Q8TF08 81 aa2.55□□□□□ -2
SPG11-211ENST00000558561 PMCHL2Q9BQD1 86 aa2.55□□□□□ -2
SPG11-211ENST00000558561 GEMIN7Q9H840 131 aaKnown RBP2.55□□□□□ -2
SPG11-211ENST00000558561 SMCO4Q9NRQ5 59 aa2.55□□□□□ -2
SPG11-211ENST00000558561 C22orf24Q9Y442 160 aa2.55□□□□□ -2
SPG11-211ENST00000558561 KRTAP9-6A8MVA2 160 aa2.54□□□□□ -2
SPG11-211ENST00000558561 K7EMI3 77 aa2.54□□□□□ -2
SPG11-211ENST00000558561 ATP6V1G1O75348 118 aa2.54□□□□□ -2
SPG11-211ENST00000558561 MT-ND6P03923 174 aa2.54□□□□□ -2
SPG11-211ENST00000558561 IGLC3P0DOY3 106 aa2.54□□□□□ -2
SPG11-211ENST00000558561 FABP4P15090 132 aa2.54□□□□□ -2
SPG11-211ENST00000558561 PFN2P35080 140 aa2.54□□□□□ -2
SPG11-211ENST00000558561 HERVK_113P63121 156 aa2.54□□□□□ -2
SPG11-211ENST00000558561 COX19Q49B96 90 aa2.54□□□□□ -2
SPG11-211ENST00000558561 C1orf137Q5JT78 98 aa2.54□□□□□ -2
SPG11-211ENST00000558561 Q8IZM0 81 aa2.54□□□□□ -2
SPG11-211ENST00000558561 LINC01561Q8N1V8 128 aa2.54□□□□□ -2
SPG11-211ENST00000558561 LINC00167Q96N53 147 aa2.54□□□□□ -2
SPG11-211ENST00000558561 C2orf88Q9BSF0 95 aa2.54□□□□□ -2
SPG11-211ENST00000558561 ANAPC11Q9NYG5 84 aa2.54□□□□□ -2
SPG11-211ENST00000558561 TRBV30A0A0K0K1B3 111 aa2.53□□□□□ -2
SPG11-211ENST00000558561 NDUFC2-KCTD14E9PQ53 114 aa2.53□□□□□ -2
SPG11-211ENST00000558561 H0Y8G0 127 aa2.53□□□□□ -2
SPG11-211ENST00000558561 SERF1AO75920 110 aa2.53□□□□□ -2
SPG11-211ENST00000558561 OXTP01178 125 aa2.53□□□□□ -2
SPG11-211ENST00000558561 HBDP02042 147 aa2.53□□□□□ -2
SPG11-211ENST00000558561 IGLV7-43P04211 117 aa2.53□□□□□ -2
SPG11-211ENST00000558561 CKS1BP61024 79 aa2.53□□□□□ -2
SPG11-211ENST00000558561 KRTAP5-1Q6L8H4 278 aa2.53□□□□□ -2
SPG11-211ENST00000558561 C7orf33Q8WU49 177 aa2.53□□□□□ -2
SPG11-211ENST00000558561 IFI27L1Q96BM0 104 aa2.53□□□□□ -2
SPG11-211ENST00000558561 PACRGQ96M98 296 aaPredicted RBP2.53□□□□□ -2
SPG11-211ENST00000558561 LINC01600Q96MT4 127 aa2.53□□□□□ -2
SPG11-211ENST00000558561 CHTOPQ9Y3Y2 248 aaKnown RBP2.53□□□□□ -2
SPG11-211ENST00000558561 LPAP08519 4548 aa2.53□□□□□ -2
SPG11-211ENST00000558561 TMEM223A0PJW6 202 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 F8VRH5 84 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 M0QXV9 152 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 KRTAP1-4P0C5Y4 121 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 TSPEAR-AS2P59090 65 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 NDUFA5Q16718 116 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 TMEM170BQ5T4T1 132 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 SPINK6Q6UWN8 80 aa2.52□□□□□ -2.01
SPG11-211ENST00000558561 F8WDY8 70 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BKO60814 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BJP06899 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 SMIM13P0DJ93 91 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BOP23527 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 G0S2P27469 103 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BBP33778 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BDP58876 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BCP62807 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST2H2BEQ16778 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BHQ93079 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 CHCHD1Q96BP2 118 aaKnown RBP2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BNQ99877 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HIST1H2BMQ99879 126 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 SND1-IT1Q9HBX3 110 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 LINC00474Q9P2X8 69 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 HMCN2Q8NDA2 5059 aa2.51□□□□□ -2.01
SPG11-211ENST00000558561 IGKV2-28A0A075B6P5 120 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms