RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 LINC00304Q8N9R0 145 aa13.17□□□□□ -0.3
ACTN1-220ENST00000556433 APOC3P02656 99 aa13.16□□□□□ -0.3
ACTN1-220ENST00000556433 LINC00158P58513 81 aa13.16□□□□□ -0.3
ACTN1-220ENST00000556433 MUC2Q02817 5179 aa13.14□□□□□ -0.31
ACTN1-220ENST00000556433 A0A0U1RRA0 63 aa13.13□□□□□ -0.31
ACTN1-220ENST00000556433 CBLN2Q8IUK8 224 aa13.13□□□□□ -0.31
ACTN1-220ENST00000556433 PLEKHB2Q96CS7 222 aa13.13□□□□□ -0.31
ACTN1-220ENST00000556433 RETNLBQ9BQ08 111 aa13.13□□□□□ -0.31
ACTN1-220ENST00000556433 TMEM223A0PJW6 202 aa13.11□□□□□ -0.31
ACTN1-220ENST00000556433 SNAPINO95295 136 aa13.11□□□□□ -0.31
ACTN1-220ENST00000556433 NDUFA5Q16718 116 aa13.1□□□□□ -0.31
ACTN1-220ENST00000556433 SVBPQ8N300 66 aa13.1□□□□□ -0.31
ACTN1-220ENST00000556433 IFI27L1Q96BM0 104 aa13.1□□□□□ -0.31
ACTN1-220ENST00000556433 HIGD2AQ9BW72 106 aa13.1□□□□□ -0.31
ACTN1-220ENST00000556433 TRAV12-1A0A0B4J245 112 aa13.09□□□□□ -0.31
ACTN1-220ENST00000556433 CHCHD1Q96BP2 118 aaKnown RBP13.09□□□□□ -0.31
ACTN1-220ENST00000556433 ATP6V1G1O75348 118 aa13.08□□□□□ -0.32
ACTN1-220ENST00000556433 SMIM13P0DJ93 91 aa13.06□□□□□ -0.32
ACTN1-220ENST00000556433 C3orf22Q8N5N4 141 aa13.06□□□□□ -0.32
ACTN1-220ENST00000556433 A0A0U1RQV1 116 aa13.05□□□□□ -0.32
ACTN1-220ENST00000556433 CTAG1AP78358 180 aa13.04□□□□□ -0.32
ACTN1-220ENST00000556433 MEIG1Q5JSS6 88 aa13.04□□□□□ -0.32
ACTN1-220ENST00000556433 YPEL4Q96NS1 127 aa13.04□□□□□ -0.32
ACTN1-220ENST00000556433 BOD1L2Q8IYS8 172 aa13.03□□□□□ -0.32
ACTN1-220ENST00000556433 IGLV7-46A0A075B6I9 117 aa13.02□□□□□ -0.33
ACTN1-220ENST00000556433 SPRR4Q96PI1 79 aa13.02□□□□□ -0.33
ACTN1-220ENST00000556433 MIR7-3HGQ8N6C7 128 aa13.01□□□□□ -0.33
ACTN1-220ENST00000556433 HERV-K104P63124 156 aa13□□□□□ -0.33
ACTN1-220ENST00000556433 FAM19A2Q8N3H0 131 aa13□□□□□ -0.33
ACTN1-220ENST00000556433 CDIP1Q9H305 208 aa13□□□□□ -0.33
ACTN1-220ENST00000556433 PRYO14603 147 aa12.99□□□□□ -0.33
ACTN1-220ENST00000556433 NCR3O14931 201 aa12.99□□□□□ -0.33
ACTN1-220ENST00000556433 HSBP1O75506 76 aa12.99□□□□□ -0.33
ACTN1-220ENST00000556433 LINC00587B1AMM8 73 aa12.98□□□□□ -0.33
ACTN1-220ENST00000556433 TPRXLQ17RH7 258 aa12.98□□□□□ -0.33
ACTN1-220ENST00000556433 SPAG11AQ6PDA7 123 aa12.98□□□□□ -0.33
ACTN1-220ENST00000556433 NDUFA12Q9UI09 145 aa12.98□□□□□ -0.33
ACTN1-220ENST00000556433 ZNF706Q9Y5V0 76 aaPredicted RBP12.98□□□□□ -0.33
ACTN1-220ENST00000556433 MYMXA0A1B0GTQ4 84 aa12.96□□□□□ -0.33
ACTN1-220ENST00000556433 LINC00337Q8N6G1 96 aa12.96□□□□□ -0.33
ACTN1-220ENST00000556433 KCNQ1DNQ9H478 68 aa12.96□□□□□ -0.33
ACTN1-220ENST00000556433 H0Y8G0 127 aa12.95□□□□□ -0.34
ACTN1-220ENST00000556433 SPRR1AP35321 89 aa12.95□□□□□ -0.34
ACTN1-220ENST00000556433 C4orf48Q5BLP8 95 aa12.95□□□□□ -0.34
ACTN1-220ENST00000556433 SMCR5Q8TEV8 140 aa12.95□□□□□ -0.34
ACTN1-220ENST00000556433 MAP1LC3CQ9BXW4 147 aa12.95□□□□□ -0.34
ACTN1-220ENST00000556433 ETDCA0A1B0GVM5 59 aa12.93□□□□□ -0.34
ACTN1-220ENST00000556433 PPDPFQ9H3Y8 114 aa12.93□□□□□ -0.34
ACTN1-220ENST00000556433 TRBV10-3A0A0K0K1G6 114 aa12.92□□□□□ -0.34
ACTN1-220ENST00000556433 KRTAP9-2Q9BYQ4 174 aa12.92□□□□□ -0.34
ACTN1-220ENST00000556433 KRTAP4-16G5E9R7 235 aaPredicted RBP12.91□□□□□ -0.34
ACTN1-220ENST00000556433 MUC17Q685J3 4493 aa12.91□□□□□ -0.34
ACTN1-220ENST00000556433 DAND5Q8N907 189 aa12.9□□□□□ -0.34
ACTN1-220ENST00000556433 LEPROTO15243 131 aa12.89□□□□□ -0.35
ACTN1-220ENST00000556433 LEPROTL1O95214 131 aa12.89□□□□□ -0.35
ACTN1-220ENST00000556433 TRGC2P03986 189 aa12.89□□□□□ -0.35
ACTN1-220ENST00000556433 TSPEAR-AS2P59090 65 aa12.89□□□□□ -0.35
ACTN1-220ENST00000556433 S100A12P80511 92 aa12.89□□□□□ -0.35
ACTN1-220ENST00000556433 Q8NBF4 154 aa12.89□□□□□ -0.35
ACTN1-220ENST00000556433 FAT4Q6V0I7 4981 aa12.86□□□□□ -0.35
ACTN1-220ENST00000556433 SERF1AO75920 110 aa12.86□□□□□ -0.35
ACTN1-220ENST00000556433 LOC107984156A0A0G2JMH3 177 aa12.85□□□□□ -0.35
ACTN1-220ENST00000556433 PLNP26678 52 aa12.85□□□□□ -0.35
ACTN1-220ENST00000556433 GAGE2AQ6NT46 116 aa12.85□□□□□ -0.35
ACTN1-220ENST00000556433 FP248Q71RG6 208 aaPredicted RBP12.85□□□□□ -0.35
ACTN1-220ENST00000556433 ARL17AQ8IVW1 177 aa12.85□□□□□ -0.35
ACTN1-220ENST00000556433 B5MCH6 92 aa12.84□□□□□ -0.35
ACTN1-220ENST00000556433 J3QQQ9 107 aa12.84□□□□□ -0.35
ACTN1-220ENST00000556433 DDTP30046 118 aa12.84□□□□□ -0.35
ACTN1-220ENST00000556433 LINC00310P59036 64 aa12.84□□□□□ -0.35
ACTN1-220ENST00000556433 LINC00483Q53H64 154 aa12.84□□□□□ -0.35
ACTN1-220ENST00000556433 FABP4P15090 132 aa12.83□□□□□ -0.36
ACTN1-220ENST00000556433 HSPB8Q9UJY1 196 aa12.83□□□□□ -0.36
ACTN1-220ENST00000556433 TRBV10-2A0A0K0K1G8 114 aa12.82□□□□□ -0.36
ACTN1-220ENST00000556433 DPM2O94777 84 aa12.82□□□□□ -0.36
ACTN1-220ENST00000556433 HERVK_113P61574 105 aa12.82□□□□□ -0.36
ACTN1-220ENST00000556433 PMCHL2Q9BQD1 86 aa12.82□□□□□ -0.36
ACTN1-220ENST00000556433 ERC2-IT1O76042 136 aa12.81□□□□□ -0.36
ACTN1-220ENST00000556433 SPINK1P00995 79 aa12.81□□□□□ -0.36
ACTN1-220ENST00000556433 LCE2AQ5TA79 106 aaPredicted RBP12.81□□□□□ -0.36
ACTN1-220ENST00000556433 LGALS3P17931 250 aaKnown RBP12.8□□□□□ -0.36
ACTN1-220ENST00000556433 MIEN1Q9BRT3 115 aa12.8□□□□□ -0.36
ACTN1-220ENST00000556433 NMUP48645 174 aa12.79□□□□□ -0.36
ACTN1-220ENST00000556433 SPANXB1Q9NS25 103 aaPredicted RBP12.79□□□□□ -0.36
ACTN1-220ENST00000556433 IGLV9-49A0A0B4J1Y8 123 aa12.78□□□□□ -0.36
ACTN1-220ENST00000556433 IGKCP01834 107 aa12.78□□□□□ -0.36
ACTN1-220ENST00000556433 MOBPQ13875 183 aa12.77□□□□□ -0.37
ACTN1-220ENST00000556433 S100A7L2Q5SY68 101 aa12.77□□□□□ -0.37
ACTN1-220ENST00000556433 Q9BRP9 147 aa12.77□□□□□ -0.37
ACTN1-220ENST00000556433 Q6ZRX8 168 aa12.76□□□□□ -0.37
ACTN1-220ENST00000556433 SSBP3-AS1Q7Z2R9 100 aa12.76□□□□□ -0.37
ACTN1-220ENST00000556433 NDUFC2O95298 119 aa12.75□□□□□ -0.37
ACTN1-220ENST00000556433 KRTAP13-3Q3SY46 172 aa12.75□□□□□ -0.37
ACTN1-220ENST00000556433 IGLV6-57P01721 117 aa12.74□□□□□ -0.37
ACTN1-220ENST00000556433 TRAV23DV6A0A075B6W5 121 aa12.71□□□□□ -0.37
ACTN1-220ENST00000556433 NPC2P61916 151 aa12.71□□□□□ -0.37
ACTN1-220ENST00000556433 ADAMTSL4-AS1Q5T5F5 129 aa12.71□□□□□ -0.37
ACTN1-220ENST00000556433 SOSTDC1Q6X4U4 206 aa12.71□□□□□ -0.37
ACTN1-220ENST00000556433 A0A0J9YXY3 114 aa12.7□□□□□ -0.38
ACTN1-220ENST00000556433 COLCA2A8K830 154 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms