RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 A0A0G2JMZ2 1700 aa1.73□□□□□ -2.13
LINC00643-204ENST00000555934 TENM1Q9UKZ4 2725 aa1.72□□□□□ -2.13
LINC00643-204ENST00000555934 ZNF137PP52743 207 aa1.72□□□□□ -2.13
LINC00643-204ENST00000555934 NCBP2-AS2Q69YL0 99 aa1.72□□□□□ -2.13
LINC00643-204ENST00000555934 UNQ6190/PRO20217Q6UXQ8 127 aa1.72□□□□□ -2.13
LINC00643-204ENST00000555934 SNURFQ9Y675 71 aa1.72□□□□□ -2.13
LINC00643-204ENST00000555934 FCGBPQ9Y6R7 5405 aaPredicted RBP1.72□□□□□ -2.13
LINC00643-204ENST00000555934 LRRC37A2A6NM11 1700 aa1.71□□□□□ -2.13
LINC00643-204ENST00000555934 TRBV7-4A0A0J9YYF1 115 aa1.71□□□□□ -2.14
LINC00643-204ENST00000555934 MYO7BQ6PIF6 2116 aa1.71□□□□□ -2.14
LINC00643-204ENST00000555934 Q96NJ1 140 aa1.71□□□□□ -2.14
LINC00643-204ENST00000555934 LINC00846Q9NV44 126 aa1.71□□□□□ -2.14
LINC00643-204ENST00000555934 GNG13Q9P2W3 67 aa1.71□□□□□ -2.14
LINC00643-204ENST00000555934 ABCA4P78363 2273 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 PAPPA2Q9BXP8 1791 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 TRGV1A0A0A0MS02 117 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 TRAV1-2A0A0B4J238 106 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 COX17Q14061 63 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 GDF5OSQ5U4N7 250 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 ALPK2Q86TB3 2170 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 SPRR4Q96PI1 79 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 PLAC8Q9NZF1 115 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 ZNF236Q9UL36 1845 aa1.7□□□□□ -2.14
LINC00643-204ENST00000555934 COL6A6A6NMZ7 2263 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 TSC2P49815 1807 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 FXYD6-FXYD2A0A087WZ82 144 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 HCRTO43612 131 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 S100A3P33764 101 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 KRTAP10-4P60372 401 aaPredicted RBP1.69□□□□□ -2.14
LINC00643-204ENST00000555934 SMIM4Q8WVI0 70 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 TET1Q8NFU7 2136 aa1.69□□□□□ -2.14
LINC00643-204ENST00000555934 ANKRD36A6QL64 1941 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 A0A1B0GUT8 65 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 H0Y9P7 68 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 ACYP2P14621 99 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 CAV3P56539 151 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 ATXN8Q156A1 80 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 DEFB106AQ8N104 65 aa1.68□□□□□ -2.14
LINC00643-204ENST00000555934 ARL14EPLP0DKL9 152 aa1.67□□□□□ -2.14
LINC00643-204ENST00000555934 Q6ZQY7 126 aa1.67□□□□□ -2.14
LINC00643-204ENST00000555934 CCL19Q99731 98 aa1.67□□□□□ -2.14
LINC00643-204ENST00000555934 FAM103A1Q9BTL3 118 aaKnown RBP1.67□□□□□ -2.14
LINC00643-204ENST00000555934 Q9Y3F1 56 aa1.67□□□□□ -2.14
LINC00643-204ENST00000555934 HMGA1P17096 107 aaKnown RBP1.66□□□□□ -2.14
LINC00643-204ENST00000555934 SPINK7P58062 85 aa1.66□□□□□ -2.14
LINC00643-204ENST00000555934 SPATA8Q6RVD6 105 aa1.66□□□□□ -2.14
LINC00643-204ENST00000555934 LINC00472Q9H8W2 130 aa1.66□□□□□ -2.14
LINC00643-204ENST00000555934 IFI6P09912 130 aa1.65□□□□□ -2.15
LINC00643-204ENST00000555934 SNRPGP62308 76 aaKnown RBP1.65□□□□□ -2.15
LINC00643-204ENST00000555934 TMEM263Q8WUH6 116 aaKnown RBP1.65□□□□□ -2.15
LINC00643-204ENST00000555934 OBSCN-AS1Q96MR7 158 aa1.65□□□□□ -2.15
LINC00643-204ENST00000555934 NDUFB1O75438 58 aa1.64□□□□□ -2.15
LINC00643-204ENST00000555934 RPL38P63173 70 aaKnown RBP1.64□□□□□ -2.15
LINC00643-204ENST00000555934 C10orf113Q5VZT2 155 aa1.64□□□□□ -2.15
LINC00643-204ENST00000555934 FXYD6Q9H0Q3 95 aa1.64□□□□□ -2.15
LINC00643-204ENST00000555934 FLG2Q5D862 2391 aaPredicted RBP1.64□□□□□ -2.15
LINC00643-204ENST00000555934 RPS27LQ71UM5 84 aaKnown RBP1.63□□□□□ -2.15
LINC00643-204ENST00000555934 PLXNB2O15031 1838 aa1.63□□□□□ -2.15
LINC00643-204ENST00000555934 DNAJC13O75165 2243 aa1.62□□□□□ -2.15
LINC00643-204ENST00000555934 TRAV21A0A0B4J279 112 aa1.62□□□□□ -2.15
LINC00643-204ENST00000555934 SNRPGP15A8MWD9 76 aa1.62□□□□□ -2.15
LINC00643-204ENST00000555934 C10orf99Q6UWK7 81 aa1.62□□□□□ -2.15
LINC00643-204ENST00000555934 LINC01549A6NIU2 74 aa1.61□□□□□ -2.15
LINC00643-204ENST00000555934 LOC730098B7Z3J9 87 aa1.61□□□□□ -2.15
LINC00643-204ENST00000555934 NREPQ16612 68 aa1.61□□□□□ -2.15
LINC00643-204ENST00000555934 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.61□□□□□ -2.15
LINC00643-204ENST00000555934 ABRACLQ9P1F3 81 aa1.61□□□□□ -2.15
LINC00643-204ENST00000555934 TRBV30A0A0K0K1B3 111 aa1.6□□□□□ -2.15
LINC00643-204ENST00000555934 CCL22O00626 93 aa1.6□□□□□ -2.15
LINC00643-204ENST00000555934 TOMM5Q8N4H5 51 aa1.6□□□□□ -2.15
LINC00643-204ENST00000555934 WFDC9Q8NEX5 89 aa1.6□□□□□ -2.15
LINC00643-204ENST00000555934 CMC2Q9NRP2 79 aa1.6□□□□□ -2.15
LINC00643-204ENST00000555934 MYO7AQ13402 2215 aa1.59□□□□□ -2.15
LINC00643-204ENST00000555934 TRBV6-1A0A0K0K1D8 114 aa1.59□□□□□ -2.15
LINC00643-204ENST00000555934 DEFB112Q30KQ8 113 aa1.59□□□□□ -2.15
LINC00643-204ENST00000555934 Q6ZRX8 168 aa1.59□□□□□ -2.15
LINC00643-204ENST00000555934 SMIM11BQ8TCY0 68 aa1.59□□□□□ -2.15
LINC00643-204ENST00000555934 PLAC4Q8WY50 150 aa1.59□□□□□ -2.15
LINC00643-204ENST00000555934 A0A096LNT2 108 aa1.58□□□□□ -2.16
LINC00643-204ENST00000555934 GVQW2A0A096LPI5 108 aaPredicted RBP1.58□□□□□ -2.16
LINC00643-204ENST00000555934 LCE6AA0A183 80 aa1.58□□□□□ -2.16
LINC00643-204ENST00000555934 A0A1B0GU69 56 aa1.58□□□□□ -2.16
LINC00643-204ENST00000555934 G3V318 75 aa1.58□□□□□ -2.16
LINC00643-204ENST00000555934 CD52P31358 61 aa1.58□□□□□ -2.16
LINC00643-204ENST00000555934 GAFA1Q96PS6 74 aa1.58□□□□□ -2.16
LINC00643-204ENST00000555934 NCOA6Q14686 2063 aaPredicted RBP1.58□□□□□ -2.16
LINC00643-204ENST00000555934 MED13LQ71F56 2210 aa1.57□□□□□ -2.16
LINC00643-204ENST00000555934 FXYD6P3P58550 94 aa1.57□□□□□ -2.16
LINC00643-204ENST00000555934 HAMPP81172 84 aa1.57□□□□□ -2.16
LINC00643-204ENST00000555934 COX14Q96I36 57 aa1.57□□□□□ -2.16
LINC00643-204ENST00000555934 LINC00959A0A1B0GUT2 108 aa1.56□□□□□ -2.16
LINC00643-204ENST00000555934 NCR3O14931 201 aa1.56□□□□□ -2.16
LINC00643-204ENST00000555934 LINC01590Q5TEZ4 76 aa1.56□□□□□ -2.16
LINC00643-204ENST00000555934 LINC00575Q6W349 94 aa1.56□□□□□ -2.16
LINC00643-204ENST00000555934 NMES1Q9C002 83 aa1.56□□□□□ -2.16
LINC00643-204ENST00000555934 EP400Q96L91 3159 aa1.56□□□□□ -2.16
LINC00643-204ENST00000555934 CPSF4LA6NMK7 179 aaKnown RBP1.55□□□□□ -2.16
LINC00643-204ENST00000555934 PIN1P1O15428 100 aa1.55□□□□□ -2.16
LINC00643-204ENST00000555934 LY6G6CO95867 125 aa1.55□□□□□ -2.16
LINC00643-204ENST00000555934 SPINK13Q1W4C9 94 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms