RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 SS18L2Q9UHA2 77 aa3.32□□□□□ -1.88
VTI1B-202ENST00000553619 PKIGQ9Y2B9 76 aa3.32□□□□□ -1.88
VTI1B-202ENST00000553619 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.31□□□□□ -1.88
VTI1B-202ENST00000553619 A0A0J9YXY3 114 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 TRBV30A0A0K0K1B3 111 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 F8W1H4 67 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 K7EP34 96 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 M0R2N4 97 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 TAX1BP3O14907 124 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 IFITM1P13164 125 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 HINT1P49773 126 aaPredicted RBP3.31□□□□□ -1.88
VTI1B-202ENST00000553619 Q6ZR54 194 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 MAPKAPK5-AS1Q8N8E1 139 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 CAMK2N2Q96S95 79 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 HIST1H4GQ99525 98 aa3.31□□□□□ -1.88
VTI1B-202ENST00000553619 GVQW2A0A096LPI5 108 aaPredicted RBP3.3□□□□□ -1.88
VTI1B-202ENST00000553619 USP17L23D6RBM5 183 aa3.3□□□□□ -1.88
VTI1B-202ENST00000553619 M0QXV9 152 aa3.3□□□□□ -1.88
VTI1B-202ENST00000553619 LINC00158P58513 81 aa3.3□□□□□ -1.88
VTI1B-202ENST00000553619 RPS28P62857 69 aaKnown RBP3.3□□□□□ -1.88
VTI1B-202ENST00000553619 SYCNQ0VAF6 134 aa3.3□□□□□ -1.88
VTI1B-202ENST00000553619 KIAA0087Q14695 138 aa3.3□□□□□ -1.88
VTI1B-202ENST00000553619 LCE1EQ5T753 118 aa3.3□□□□□ -1.88
VTI1B-202ENST00000553619 ZNF625Q96I27 306 aaPredicted RBP3.3□□□□□ -1.88
VTI1B-202ENST00000553619 HUWE1Q7Z6Z7 4374 aaKnown RBP3.3□□□□□ -1.88
VTI1B-202ENST00000553619 A0A1B0GX51 115 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 FABP2P12104 132 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 TSPEAR-AS2P59090 65 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 HIGD2BQ4VC39 106 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 UNQ6190/PRO20217Q6UXQ8 127 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 C15orf56Q8N910 161 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 TTTY13Q9BZ97 58 aa3.29□□□□□ -1.88
VTI1B-202ENST00000553619 LCE6AA0A183 80 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 SMIM13P0DJ93 91 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 MT3P25713 68 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 PFN2P35080 140 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 BVES-AS1Q5T3Y7 98 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 Q6Q795 121 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 C2orf82Q6UX34 121 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 CARD19Q96LW7 228 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 PPDPFQ9H3Y8 114 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 TP73-AS1Q9UF72 201 aa3.28□□□□□ -1.88
VTI1B-202ENST00000553619 DNAH9Q9NYC9 4486 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 STAB2Q8WWQ8 2551 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 A0A0U1RRA0 63 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 LOC107984640A0A0U1RRK4 108 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 LRCOL1A6NCL2 159 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 J3KT08 172 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 TLX1NBP0CAT3 122 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 SEC61GP60059 68 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 CNBPP62633 177 aaKnown RBP3.27□□□□□ -1.89
VTI1B-202ENST00000553619 Q6ZRN7 208 aaPredicted RBP3.27□□□□□ -1.89
VTI1B-202ENST00000553619 Q6ZRU5 148 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 LINC00336Q6ZUF6 198 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 C2orf91Q6ZV80 131 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 MUSTN1Q8IVN3 82 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 CEND1Q8N111 149 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 MIR7-3HGQ8N6C7 128 aa3.27□□□□□ -1.89
VTI1B-202ENST00000553619 A0A087WTM6 91 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 LOC107984156A0A0G2JMH3 177 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 NDUFC2-KCTD14E9PQ53 114 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 LECT2O14960 151 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 ARL17AQ8IVW1 177 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 Q8N814 137 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 LINC00308Q8TCZ7 52 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 LINC00526Q96FQ7 95 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 C6orf48Q9UBA6 75 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 SPCS1Q9Y6A9 102 aa3.26□□□□□ -1.89
VTI1B-202ENST00000553619 NDUFC2O95298 119 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 ADAMTSL4-AS1Q5T5F5 129 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 C9orf163Q8N9P6 203 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 RAB37Q96AX2 223 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 LITAFQ99732 161 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 LINC00474Q9P2X8 69 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 V9GYY9 64 aa3.25□□□□□ -1.89
VTI1B-202ENST00000553619 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.24□□□□□ -1.89
VTI1B-202ENST00000553619 TRAV13-2A0A0B4J235 113 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 A0A1W2PPM0 123 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 NPC2P61916 151 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 RPL18AQ02543 176 aaKnown RBP3.24□□□□□ -1.89
VTI1B-202ENST00000553619 GAGE2BQ13066 116 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 GAGE2EQ4V326 116 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 C9orf116Q5BN46 136 aaPredicted RBP3.24□□□□□ -1.89
VTI1B-202ENST00000553619 LYRM7Q5U5X0 104 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 DAND5Q8N907 189 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 DPH3Q96FX2 82 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 SND1-IT1Q9HBX3 110 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 GAGE2DQ9UEU5 116 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 MEGF8Q7Z7M0 2845 aa3.24□□□□□ -1.89
VTI1B-202ENST00000553619 IGLV5-52A0A0A0MRZ9 124 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 A0A0B4J2C4 111 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 TRBV10-2A0A0K0K1G8 114 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 C16orf90A8MZG2 172 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 WFDC2Q14508 124 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 Q6ZRP5 223 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 NHP2Q9NX24 153 aaKnown RBP3.23□□□□□ -1.89
VTI1B-202ENST00000553619 PRO1854Q9UHT4 67 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 PRO0628Q9UI54 55 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 COL7A1Q02388 2944 aa3.23□□□□□ -1.89
VTI1B-202ENST00000553619 PRKDCP78527 4128 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms