RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 RICTORQ6R327 1708 aa2.85□□□□□ -1.95
VPS29-210ENST00000552130 LY6G6CO95867 125 aa2.84□□□□□ -1.95
VPS29-210ENST00000552130 PRB2P02812 416 aaPredicted RBP2.84□□□□□ -1.95
VPS29-210ENST00000552130 SSC5DA1L4H1 1573 aa2.83□□□□□ -1.96
VPS29-210ENST00000552130 ASXL3Q9C0F0 2248 aa2.83□□□□□ -1.96
VPS29-210ENST00000552130 PIN1P1O15428 100 aa2.83□□□□□ -1.96
VPS29-210ENST00000552130 PCOTHQ58A44 107 aa2.83□□□□□ -1.96
VPS29-210ENST00000552130 KIAA0556O60303 1618 aa2.82□□□□□ -1.96
VPS29-210ENST00000552130 CACNA1BQ00975 2339 aa2.82□□□□□ -1.96
VPS29-210ENST00000552130 ENHOQ6UWT2 76 aa2.82□□□□□ -1.96
VPS29-210ENST00000552130 FMN2Q9NZ56 1722 aa2.82□□□□□ -1.96
VPS29-210ENST00000552130 SSBP3-AS1Q7Z2R9 100 aa2.81□□□□□ -1.96
VPS29-210ENST00000552130 ABCC6O95255 1503 aa2.81□□□□□ -1.96
VPS29-210ENST00000552130 UGGT1Q9NYU2 1555 aa2.81□□□□□ -1.96
VPS29-210ENST00000552130 ZDBF2Q9HCK1 2354 aa2.81□□□□□ -1.96
VPS29-210ENST00000552130 KNTC1P50748 2209 aa2.8□□□□□ -1.96
VPS29-210ENST00000552130 RPL37P61927 97 aaKnown RBP2.8□□□□□ -1.96
VPS29-210ENST00000552130 PRB1P04280 392 aa2.78□□□□□ -1.96
VPS29-210ENST00000552130 COX7BP24311 80 aa2.78□□□□□ -1.96
VPS29-210ENST00000552130 UBL5Q9BZL1 73 aa2.78□□□□□ -1.96
VPS29-210ENST00000552130 CROCC2H7BZ55 1655 aa2.77□□□□□ -1.97
VPS29-210ENST00000552130 FCER1GP30273 86 aa2.77□□□□□ -1.97
VPS29-210ENST00000552130 TECTAO75443 2155 aa2.77□□□□□ -1.97
VPS29-210ENST00000552130 AHCTF1Q8WYP5 2266 aa2.76□□□□□ -1.97
VPS29-210ENST00000552130 POLR1AO95602 1720 aaPredicted RBP2.76□□□□□ -1.97
VPS29-210ENST00000552130 NRAPQ86VF7 1730 aa2.76□□□□□ -1.97
VPS29-210ENST00000552130 SLIT1O75093 1534 aa2.75□□□□□ -1.97
VPS29-210ENST00000552130 NCBP2-AS2Q69YL0 99 aa2.75□□□□□ -1.97
VPS29-210ENST00000552130 GOLGA4Q13439 2230 aaKnown RBP2.74□□□□□ -1.97
VPS29-210ENST00000552130 A0A0G2JMZ2 1700 aa2.74□□□□□ -1.97
VPS29-210ENST00000552130 NDUFA4O00483 81 aa2.74□□□□□ -1.97
VPS29-210ENST00000552130 DOT1LQ8TEK3 1739 aa2.73□□□□□ -1.97
VPS29-210ENST00000552130 BIVM-ERCC5R4GMW8 1640 aa2.73□□□□□ -1.97
VPS29-210ENST00000552130 KRTAP12-1P59990 96 aa2.73□□□□□ -1.97
VPS29-210ENST00000552130 TNCP24821 2201 aa2.72□□□□□ -1.97
VPS29-210ENST00000552130 URB1O60287 2271 aaKnown RBP2.71□□□□□ -1.98
VPS29-210ENST00000552130 FLG2Q5D862 2391 aaPredicted RBP2.71□□□□□ -1.98
VPS29-210ENST00000552130 UBE2DNLQ8IWF7 75 aa2.71□□□□□ -1.98
VPS29-210ENST00000552130 EFCAB6Q5THR3 1501 aa2.71□□□□□ -1.98
VPS29-210ENST00000552130 ERCC6L2Q5T890 1561 aa2.7□□□□□ -1.98
VPS29-210ENST00000552130 PLXNB2O15031 1838 aa2.7□□□□□ -1.98
VPS29-210ENST00000552130 ABCA5Q8WWZ7 1642 aa2.7□□□□□ -1.98
VPS29-210ENST00000552130 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
VPS29-210ENST00000552130 K7EMI3 77 aa2.68□□□□□ -1.98
VPS29-210ENST00000552130 PRH1P02810 166 aa2.68□□□□□ -1.98
VPS29-210ENST00000552130 RPL38P63173 70 aaKnown RBP2.68□□□□□ -1.98
VPS29-210ENST00000552130 TOMM5Q8N4H5 51 aa2.68□□□□□ -1.98
VPS29-210ENST00000552130 LY75O60449 1722 aa2.68□□□□□ -1.98
VPS29-210ENST00000552130 ADCY10Q96PN6 1610 aa2.68□□□□□ -1.98
VPS29-210ENST00000552130 LRRC37AA6NMS7 1700 aa2.67□□□□□ -1.98
VPS29-210ENST00000552130 NAV3Q8IVL0 2385 aa2.67□□□□□ -1.98
VPS29-210ENST00000552130 KIAA0586Q9BVV6 1533 aa2.67□□□□□ -1.98
VPS29-210ENST00000552130 CPSF4LA6NMK7 179 aaKnown RBP2.66□□□□□ -1.98
VPS29-210ENST00000552130 QSER1Q2KHR3 1735 aa2.65□□□□□ -1.98
VPS29-210ENST00000552130 TULP4Q9NRJ4 1543 aa2.65□□□□□ -1.99
VPS29-210ENST00000552130 KRTAP10-10P60014 251 aa2.65□□□□□ -1.99
VPS29-210ENST00000552130 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
VPS29-210ENST00000552130 SPTY2D1-AS1A0A0U1RR47 76 aa2.64□□□□□ -1.99
VPS29-210ENST00000552130 NMES1Q9C002 83 aa2.64□□□□□ -1.99
VPS29-210ENST00000552130 C3P01024 1663 aa2.63□□□□□ -1.99
VPS29-210ENST00000552130 KRTAP5-7Q6L8G8 165 aa2.63□□□□□ -1.99
VPS29-210ENST00000552130 JMJD1CQ15652 2540 aa2.63□□□□□ -1.99
VPS29-210ENST00000552130 KCNQ1DNQ9H478 68 aa2.62□□□□□ -1.99
VPS29-210ENST00000552130 CMC2Q9NRP2 79 aa2.62□□□□□ -1.99
VPS29-210ENST00000552130 TJP1Q07157 1748 aa2.62□□□□□ -1.99
VPS29-210ENST00000552130 ANKRD36CQ5JPF3 1778 aa2.61□□□□□ -1.99
VPS29-210ENST00000552130 K7EIL1 84 aa2.61□□□□□ -1.99
VPS29-210ENST00000552130 FXYD6P3P58550 94 aa2.61□□□□□ -1.99
VPS29-210ENST00000552130 DEFB114Q30KQ6 69 aa2.61□□□□□ -1.99
VPS29-210ENST00000552130 M0R1W7 72 aa2.6□□□□□ -1.99
VPS29-210ENST00000552130 ANGP03950 147 aaKnown RBP2.6□□□□□ -1.99
VPS29-210ENST00000552130 ARL14EPLP0DKL9 152 aa2.6□□□□□ -1.99
VPS29-210ENST00000552130 SERF2P84101 59 aa2.6□□□□□ -1.99
VPS29-210ENST00000552130 KRTAP6-3Q3LI67 103 aa2.6□□□□□ -1.99
VPS29-210ENST00000552130 DEFB119Q8N690 84 aa2.6□□□□□ -1.99
VPS29-210ENST00000552130 CNTRLQ7Z7A1 2325 aa2.6□□□□□ -1.99
VPS29-210ENST00000552130 ETDCA0A1B0GVM5 59 aa2.59□□□□□ -1.99
VPS29-210ENST00000552130 IQGAP2Q13576 1575 aa2.58□□□□□ -2
VPS29-210ENST00000552130 NWD1Q149M9 1564 aa2.58□□□□□ -2
VPS29-210ENST00000552130 CACNA1EQ15878 2313 aa2.57□□□□□ -2
VPS29-210ENST00000552130 FAM208BQ5VWN6 2430 aa2.57□□□□□ -2
VPS29-210ENST00000552130 IGIPA6NJ69 53 aa2.56□□□□□ -2
VPS29-210ENST00000552130 PLNP26678 52 aa2.56□□□□□ -2
VPS29-210ENST00000552130 CRIPTQ9P021 101 aa2.56□□□□□ -2
VPS29-210ENST00000552130 FBN1P35555 2871 aaKnown RBP2.55□□□□□ -2
VPS29-210ENST00000552130 ABRACLQ9P1F3 81 aa2.55□□□□□ -2
VPS29-210ENST00000552130 NRXN3Q9Y4C0 1643 aa2.55□□□□□ -2
VPS29-210ENST00000552130 I3L3M4 83 aa2.54□□□□□ -2
VPS29-210ENST00000552130 TP53AIP1Q9HCN2 124 aa2.54□□□□□ -2
VPS29-210ENST00000552130 AGLP35573 1532 aa2.53□□□□□ -2
VPS29-210ENST00000552130 I3L2K1 104 aa2.53□□□□□ -2
VPS29-210ENST00000552130 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP2.52□□□□□ -2.012e-11■■■■■ 31.7
VPS29-210ENST00000552130 MRPL33O75394 65 aaKnown RBP2.52□□□□□ -2.01
VPS29-210ENST00000552130 CNOT1A5YKK6 2376 aaKnown RBP2.52□□□□□ -2.01
VPS29-210ENST00000552130 OTOGLQ3ZCN5 2332 aa2.51□□□□□ -2.01
VPS29-210ENST00000552130 DEFB131BA0A096LNP1 70 aa2.51□□□□□ -2.01
VPS29-210ENST00000552130 LYNX1P0DP58 116 aa2.51□□□□□ -2.01
VPS29-210ENST00000552130 KRTAP13-1Q8IUC0 172 aa2.51□□□□□ -2.01
VPS29-210ENST00000552130 SMIM27A0A1W2PRY6 76 aa2.5□□□□□ -2.01
VPS29-210ENST00000552130 PIGYQ3MUY2 71 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms