RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 LYSTQ99698 3801 aa-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 SONP18583 2426 aaKnown RBP-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 NF1P21359 2839 aa-0.33□□□□□ -2.46
NPAS3-208ENST00000550662 SETD2Q9BYW2 2564 aaPredicted RBP-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 MLH3Q9UHC1 1453 aa-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 A0A0G2JND7 137 aa-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 LOC730098B7Z3J9 87 aa-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 PMCHL1Q16048 86 aa-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 AKAP9Q99996 3911 aa-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 COL6A5A8TX70 2615 aa-0.34□□□□□ -2.46
NPAS3-208ENST00000550662 DSPP15924 2871 aaKnown RBP-0.35□□□□□ -2.46
NPAS3-208ENST00000550662 H3BQF6 201 aa-0.35□□□□□ -2.47
NPAS3-208ENST00000550662 APOBP04114 4563 aaKnown RBP-0.35□□□□□ -2.47
NPAS3-208ENST00000550662 CCDC141Q6ZP82 1450 aa-0.35□□□□□ -2.47
NPAS3-208ENST00000550662 MPC2O95563 127 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 RBP2P50120 134 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 S100A10P60903 97 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 PSMG4Q5JS54 123 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 FXYD6Q9H0Q3 95 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 AP4S1Q9Y587 144 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 MUC17Q685J3 4493 aa-0.36□□□□□ -2.47
NPAS3-208ENST00000550662 PCNX1Q96RV3 2341 aa-0.37□□□□□ -2.47
NPAS3-208ENST00000550662 DNAH11Q96DT5 4516 aa-0.37□□□□□ -2.47
NPAS3-208ENST00000550662 A0A1B0GU69 56 aa-0.37□□□□□ -2.47
NPAS3-208ENST00000550662 PKHD1L1Q86WI1 4243 aa-0.37□□□□□ -2.47
NPAS3-208ENST00000550662 CELSR3Q9NYQ7 3312 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 CREBBPQ92793 2442 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 ATP6V1G2-DDX39BF2Z307 99 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 M0R2T5 61 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 PMCHL2Q9BQD1 86 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 IQSEC2Q5JU85 1478 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 NBASA2RRP1 2371 aa-0.38□□□□□ -2.47
NPAS3-208ENST00000550662 VPS13BQ7Z7G8 4022 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 KNL1Q8NG31 2342 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 ATOX1O00244 68 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 MT-ATP8P03928 68 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 C6orf201Q7Z4U5 140 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 DEFB105AQ8NG35 78 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 TRGV9Q99603 122 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 WDR87Q6ZQQ6 2873 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 CUBNO60494 3623 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 EPG5Q9HCE0 2579 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 FMN2Q9NZ56 1722 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 MXRA5Q9NR99 2828 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 HECTD1Q9ULT8 2610 aa-0.39□□□□□ -2.47
NPAS3-208ENST00000550662 PAPPA2Q9BXP8 1791 aa-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 MARF1Q9Y4F3 1742 aaKnown RBP-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 H7BZZ5 65 aa-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 UQCRHP07919 91 aa-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 SPRR2AP35326 72 aa-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 ACBD7Q8N6N7 88 aa-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 NIPBLQ6KC79 2804 aaeCLIP-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 EDC4Q6P2E9 1401 aaKnown RBP-0.4□□□□□ -2.47
NPAS3-208ENST00000550662 FYCO1Q9BQS8 1478 aa-0.41□□□□□ -2.47
NPAS3-208ENST00000550662 LINC00032P0C843 101 aa-0.41□□□□□ -2.48
NPAS3-208ENST00000550662 AKAP13Q12802 2813 aa-0.41□□□□□ -2.48
NPAS3-208ENST00000550662 CNTLNQ9NXG0 1405 aa-0.41□□□□□ -2.48
NPAS3-208ENST00000550662 RIF1Q5UIP0 2472 aaKnown RBP-0.41□□□□□ -2.48
NPAS3-208ENST00000550662 TRANK1O15050 2925 aa-0.41□□□□□ -2.48
NPAS3-208ENST00000550662 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 PRRC2CQ9Y520 2896 aaKnown RBP-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 ANKRD36A6QL64 1941 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 ANKRD36BQ8N2N9 1353 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 LAMA3Q16787 3333 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 ANK3Q12955 4377 aaKnown RBP-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 H0Y9P7 68 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 KLK9Q2XQG4 91 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 KRTAP6-2Q3LI66 62 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 TEX14Q8IWB6 1497 aa-0.42□□□□□ -2.48
NPAS3-208ENST00000550662 ITPR2Q14571 2701 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 ASIPP42127 132 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 KRTAP19-8Q3LI54 63 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 SERP2Q8N6R1 65 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 SPG11Q96JI7 2443 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 DNAH2Q9P225 4427 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 ABCC2Q92887 1545 aa-0.43□□□□□ -2.48
NPAS3-208ENST00000550662 LAMA1P25391 3075 aa-0.44□□□□□ -2.48
NPAS3-208ENST00000550662 TNRC18O15417 2968 aaPredicted RBP-0.44□□□□□ -2.48
NPAS3-208ENST00000550662 RAPGEF2Q9Y4G8 1499 aa-0.44□□□□□ -2.48
NPAS3-208ENST00000550662 ZZEF1O43149 2961 aa-0.44□□□□□ -2.48
NPAS3-208ENST00000550662 SLIT1O75093 1534 aa-0.44□□□□□ -2.48
NPAS3-208ENST00000550662 KIAA1551Q9HCM1 1747 aa-0.44□□□□□ -2.48
NPAS3-208ENST00000550662 USP9YO00507 2555 aaPredicted RBP-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 TARBP1Q13395 1621 aaKnown RBP-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 SPRR2EP22531 72 aa-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 DEFB135Q30KP9 77 aa-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 DEFB107AQ8IZN7 70 aa-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 ITPR3Q14573 2671 aa-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 HTTP42858 3142 aa-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 TACC2O95359 2948 aa-0.45□□□□□ -2.48
NPAS3-208ENST00000550662 DNAH7Q8WXX0 4024 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 SHPRHQ149N8 1683 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 NKTRP30414 1462 aaKnown RBP-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 KNDC1Q76NI1 1749 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 ITPR1Q14643 2758 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 CPSF4LA6NMK7 179 aaKnown RBP-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 GNGT1P63211 74 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 DPY30Q9C005 99 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 APLNQ9ULZ1 77 aa-0.46□□□□□ -2.48
NPAS3-208ENST00000550662 PLECQ15149 4684 aaKnown RBP-0.46□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms