RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 TM2D2Q9BX73 214 aa4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 KRTAP1-5Q9BYS1 174 aa4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 PRR34Q9NV39 138 aa4.77□□□□□ -1.65
DEPDC4-208ENST00000549341 A0A0J9YXY3 114 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 GAGE12HA6NDE8 117 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 DNAH10OSP0CZ25 163 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 SMIM13P0DJ93 91 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 IFITM1P13164 125 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 TSPEAR-AS2P59090 65 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 CKS1BP61024 79 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 TTC32Q5I0X7 151 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 WFDC10BQ8IUB3 73 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 Q8IZM0 81 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 UPK3BQ9BT76 320 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 C1orf43Q9BWL3 253 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 SPANXDQ9BXN6 97 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 Q9H8V8 135 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 SPANXCQ9NY87 97 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 TP73-AS1Q9UF72 201 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 LINC00588Q9Y4M8 146 aa4.76□□□□□ -1.65
DEPDC4-208ENST00000549341 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.75□□□□□ -1.65
DEPDC4-208ENST00000549341 C9orf118A6NHY6 69 aa4.75□□□□□ -1.65
DEPDC4-208ENST00000549341 COX11Q9Y6N1 276 aa4.75□□□□□ -1.65
DEPDC4-208ENST00000549341 IGLV10-54A0A075B6I4 117 aa4.74□□□□□ -1.65
DEPDC4-208ENST00000549341 F8WDY8 70 aa4.74□□□□□ -1.65
DEPDC4-208ENST00000549341 KRTAP10-1P60331 282 aa4.74□□□□□ -1.65
DEPDC4-208ENST00000549341 SERTAD4-AS1Q5TG53 156 aa4.74□□□□□ -1.65
DEPDC4-208ENST00000549341 ENHOQ6UWT2 76 aa4.74□□□□□ -1.65
DEPDC4-208ENST00000549341 LRP1Q07954 4544 aaKnown RBP4.74□□□□□ -1.65
DEPDC4-208ENST00000549341 IGKV2D-24A0A075B6R9 120 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 IBA57-AS1B1ANH7 110 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 SPAG11BQ08648 103 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 FOXI1Q12951 378 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 LYRM7Q5U5X0 104 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 RAB37Q96AX2 223 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 ZNF625Q96I27 306 aaPredicted RBP4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 PPDPFQ9H3Y8 114 aa4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 NHP2Q9NX24 153 aaKnown RBP4.73□□□□□ -1.65
DEPDC4-208ENST00000549341 ZNF561-AS1K7EIQ3 104 aa4.72□□□□□ -1.65
DEPDC4-208ENST00000549341 FXYD2P54710 66 aa4.72□□□□□ -1.65
DEPDC4-208ENST00000549341 LINC00158P58513 81 aa4.72□□□□□ -1.65
DEPDC4-208ENST00000549341 COX17Q14061 63 aa4.72□□□□□ -1.65
DEPDC4-208ENST00000549341 LRP2P98164 4655 aa4.71□□□□□ -1.66
DEPDC4-208ENST00000549341 MUSTN1Q8IVN3 82 aa4.71□□□□□ -1.66
DEPDC4-208ENST00000549341 ERG28Q9UKR5 140 aa4.71□□□□□ -1.66
DEPDC4-208ENST00000549341 A0A0B4J2C4 111 aa4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 A0A1B0GWB2 263 aa4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 KRTAP29-1A8MX34 341 aaPredicted RBP4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 TAX1BP3O14907 124 aa4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 VAMP3Q15836 100 aa4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 C2orf48Q96LS8 159 aa4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 Q9HAA7 133 aa4.7□□□□□ -1.66
DEPDC4-208ENST00000549341 A0A0U1RRA0 63 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 A0A1B0GV90 55 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 A4D1N5 150 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 FABP2P12104 132 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 GTF2H5Q6ZYL4 71 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 LINC00308Q8TCZ7 52 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 CAMK2N2Q96S95 79 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 LITAFQ99732 161 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 PRO1854Q9UHT4 67 aa4.69□□□□□ -1.66
DEPDC4-208ENST00000549341 FAT3Q8TDW7 4589 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 GVQW2A0A096LPI5 108 aaPredicted RBP4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 TRAV13-2A0A0B4J235 113 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 TRBV30A0A0K0K1B3 111 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 PSCAO43653 123 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 PFN2P35080 140 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 KIAA0087Q14695 138 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 Q1RN00 199 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 C14orf177Q52M58 125 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 ADAMTSL4-AS1Q5T5F5 129 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 Q6ZRN7 208 aaPredicted RBP4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 MIR7-3HGQ8N6C7 128 aa4.68□□□□□ -1.66
DEPDC4-208ENST00000549341 H3BUT2 72 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 COX6CP09669 75 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 CFC1BP0CG36 223 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 CFC1P0CG37 223 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 PSMB2P49721 201 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 NPC2P61916 151 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 NTN5Q8WTR8 489 aaPredicted RBP4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 PKIGQ9Y2B9 76 aa4.67□□□□□ -1.66
DEPDC4-208ENST00000549341 A0A087WTM6 91 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 A0A1W2PPM0 123 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 GAGE10A6NGK3 116 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 K7ERJ3 54 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 SCGB1C2P0DMR2 95 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 HIGD2BQ4VC39 106 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 KRTAP26-1Q6PEX3 210 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 C2orf82Q6UX34 121 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 DAND5Q8N907 189 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 SND1-IT1Q9HBX3 110 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 CBY1Q9Y3M2 126 aa4.66□□□□□ -1.66
DEPDC4-208ENST00000549341 IGLV5-52A0A0A0MRZ9 124 aa4.65□□□□□ -1.67
DEPDC4-208ENST00000549341 SYCNQ0VAF6 134 aa4.65□□□□□ -1.67
DEPDC4-208ENST00000549341 RNF151Q2KHN1 245 aa4.65□□□□□ -1.67
DEPDC4-208ENST00000549341 UNQ6190/PRO20217Q6UXQ8 127 aa4.65□□□□□ -1.67
DEPDC4-208ENST00000549341 TRBV20-1A0A075B6N2 111 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 LOC107984156A0A0G2JMH3 177 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 H7C2G1 150 aa4.64□□□□□ -1.67
DEPDC4-208ENST00000549341 NDUFC2O95298 119 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms