RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ARHGEF12Q9NZN5 1544 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 LRP6O75581 1613 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 PREX2Q70Z35 1606 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 MYO3AQ8NEV4 1616 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 USP32Q8NFA0 1604 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 WIZO95785 1651 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 CLTCQ00610 1675 aaKnown RBP0.27□□□□□ -2.37
VPS29-205ENST00000548539 SHPRHQ149N8 1683 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 TIAM2Q8IVF5 1701 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 IFT172Q9UG01 1749 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 PARP4Q9UKK3 1724 aaKnown RBP0.27□□□□□ -2.37
VPS29-205ENST00000548539 CRYBG1Q9Y4K1 1723 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 BCORQ6W2J9 1755 aa0.27□□□□□ -2.37
VPS29-205ENST00000548539 KNL1Q8NG31 2342 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 ALMS1Q8TCU4 4167 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 BPTFQ12830 3046 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 TRAV21A0A0B4J279 112 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 A0A1B0GWA3 101 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 LINC01549A6NIU2 74 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 CEBPZOSA8MTT3 80 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 LOC730098B7Z3J9 87 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 D6R8Y8 96 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 NDUFC1O43677 76 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 LEPROTL1O95214 131 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 SPINK1P00995 79 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 PLGLAQ15195 96 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 HMGN3Q15651 99 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 DEFB112Q30KQ8 113 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 PSMG4Q5JS54 123 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 LELP1Q5T871 98 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 C10orf113Q5VZT2 155 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 MUSTN1Q8IVN3 82 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 LINC00846Q9NV44 126 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 IQSEC2Q5JU85 1478 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 EHBP1L1Q8N3D4 1523 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 UNC13BO14795 1591 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 CFAP74Q9C0B2 1584 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 SETBP1Q9Y6X0 1596 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 ABCA6Q8N139 1617 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 RNF17Q9BXT8 1623 aaKnown RBP0.26□□□□□ -2.37
VPS29-205ENST00000548539 MYOM1P52179 1685 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 TJP1Q07157 1748 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 PTPRZ1P23471 2315 aaPredicted RBP0.26□□□□□ -2.37
VPS29-205ENST00000548539 C2CD3Q4AC94 2353 aa0.26□□□□□ -2.37
VPS29-205ENST00000548539 REV3LO60673 3130 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 F8P00451 2351 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 CACNA1EQ15878 2313 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 ANKRD36CQ5JPF3 1778 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 RICTORQ6R327 1708 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 NRAPQ86VF7 1730 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 PTPN23Q9H3S7 1636 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 PLXNC1O60486 1568 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 EFCAB5A4FU69 1503 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 TOP2AP11388 1531 aaKnown RBP0.25□□□□□ -2.37
VPS29-205ENST00000548539 PXDNQ92626 1479 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 EEA1Q15075 1411 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 LCE6AA0A183 80 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 CTXND1A0A1B0GTU2 59 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 KANTRA0A1W2PQU2 76 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 BCE1O60756 84 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 ACYP1P07311 99 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 SAA2P0DJI9 122 aaPredicted RBP0.25□□□□□ -2.37
VPS29-205ENST00000548539 IFI27P40305 119 aaPredicted RBP0.25□□□□□ -2.37
VPS29-205ENST00000548539 CRIP1P50238 77 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 BAGE3Q86Y29 109 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 BAGE2Q86Y30 109 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 FXYD6Q9H0Q3 95 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 PRO3102Q9H379 93 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 LENEPQ9Y5L5 61 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 CELSR1Q9NYQ6 3014 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 JMJD1CQ15652 2540 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 NCOR1O75376 2440 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 WNK2Q9Y3S1 2297 aa0.25□□□□□ -2.37
VPS29-205ENST00000548539 PKD1L3Q7Z443 1732 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 ALS2Q96Q42 1657 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 PIK3C2BO00750 1634 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 ABCA5Q8WWZ7 1642 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 CCDC180Q9P1Z9 1646 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 MAP3K4Q9Y6R4 1608 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 LRRC7Q96NW7 1537 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 NKTRP30414 1462 aaKnown RBP0.24□□□□□ -2.37
VPS29-205ENST00000548539 PKDREJQ9NTG1 2253 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 UQCR11O14957 56 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 COX6CP09669 75 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 NREPQ16612 68 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 ENHOQ6UWT2 76 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 SSBP3-AS1Q7Z2R9 100 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 UBE2DNLQ8IWF7 75 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 TMEM263Q8WUH6 116 aaKnown RBP0.24□□□□□ -2.37
VPS29-205ENST00000548539 GNG13Q9P2W3 67 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 R4GMQ9 66 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 GVINP1Q7Z2Y8 2422 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 POLR1AO95602 1720 aaPredicted RBP0.24□□□□□ -2.37
VPS29-205ENST00000548539 CACNA1HO95180 2353 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 SPTBN1Q01082 2364 aaKnown RBP0.24□□□□□ -2.37
VPS29-205ENST00000548539 C5P01031 1676 aa0.24□□□□□ -2.37
VPS29-205ENST00000548539 UGGT1Q9NYU2 1555 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 ABCC6O95255 1503 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 ABCC1P33527 1531 aa0.23□□□□□ -2.37
VPS29-205ENST00000548539 AGLP35573 1532 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms