RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 LINC01556Q5JQF7 62 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 LINC00242Q5T6M2 205 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 ZC2HC1BQ5TFG8 222 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 DEFB104AQ8WTQ1 72 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 NTN5Q8WTR8 489 aaPredicted RBP5.71□□□□□ -1.5
VPS29-203ENST00000546588 TMEM223A0PJW6 202 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 NUPR2A6NF83 97 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 DNAH10OSP0CZ25 163 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 SMIM13P0DJ93 91 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 COX7CP15954 63 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 WFDC2Q14508 124 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 ESRGQ1W209 222 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 CHCHD5Q9BSY4 110 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 CHAC1Q9BUX1 264 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 RBM12B-AS1Q9P1G2 102 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 SERP1Q9Y6X1 66 aa5.7□□□□□ -1.5
VPS29-203ENST00000546588 IGHV3OR16-9A0A0B4J2B5 98 aa5.69□□□□□ -1.5
VPS29-203ENST00000546588 TRBV7-6A0A0J9YX20 115 aa5.69□□□□□ -1.5
VPS29-203ENST00000546588 C8orf87E5RJ46 101 aa5.69□□□□□ -1.5
VPS29-203ENST00000546588 COX8AP10176 69 aa5.69□□□□□ -1.5
VPS29-203ENST00000546588 A0A0J9YXV3 536 aa5.68□□□□□ -1.5
VPS29-203ENST00000546588 TRBV7-7A0A0K0K1E9 115 aa5.68□□□□□ -1.5
VPS29-203ENST00000546588 CXCL5P42830 114 aa5.68□□□□□ -1.5
VPS29-203ENST00000546588 APLNQ9ULZ1 77 aa5.68□□□□□ -1.5
VPS29-203ENST00000546588 IGKV2D-26A0A0A0MRZ7 120 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 LINC00959A0A1B0GUT2 108 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 EPM2AB3EWF7 344 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 NPC2P61916 151 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 TEN1Q86WV5 123 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 WFDC10BQ8IUB3 73 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 STAB2Q8WWQ8 2551 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 STARD9Q9P2P6 4700 aa5.67□□□□□ -1.5
VPS29-203ENST00000546588 A0A087WZ39 114 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 IGHV1-58A0A0C4DH39 117 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 SMIM1B2RUZ4 78 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 LEPROTO15243 131 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 NDUFS5O43920 106 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 HERVK_113P61574 105 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 REG3AQ06141 175 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 RNASE13Q5GAN3 156 aaKnown RBP5.66□□□□□ -1.5
VPS29-203ENST00000546588 HIGD1BQ9P298 99 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 CDKN2A-AS1Q9UH64 79 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 LINC00588Q9Y4M8 146 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 FBN3Q75N90 2809 aa5.66□□□□□ -1.5
VPS29-203ENST00000546588 CCL18P55774 89 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 COX6A2Q02221 97 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 MIAQ16674 131 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 KRTAP26-1Q6PEX3 210 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 ENHOQ6UWT2 76 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 KTN1-AS1Q86SY8 53 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 LYSTQ99698 3801 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 PRO0461Q9UI25 63 aa5.65□□□□□ -1.5
VPS29-203ENST00000546588 IGLL5B9A064 214 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 H3BT86 120 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 ATOX1O00244 68 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 IGHV3-30-3P0DP02 117 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 TSPEAR-AS2P59090 65 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 TMEM170BQ5T4T1 132 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 C2orf91Q6ZV80 131 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 PCP2Q8IVA1 136 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 LINC00269Q8N2A0 174 aa5.64□□□□□ -1.51
VPS29-203ENST00000546588 KLK5Q9Y337 293 aaPredicted RBP5.64□□□□□ -1.51
VPS29-203ENST00000546588 DNAH6Q9C0G6 4158 aa5.63□□□□□ -1.51
VPS29-203ENST00000546588 PLECQ15149 4684 aaKnown RBP5.63□□□□□ -1.51
VPS29-203ENST00000546588 IBA57-AS1B1ANH7 110 aa5.63□□□□□ -1.51
VPS29-203ENST00000546588 ANGP03950 147 aaKnown RBP5.63□□□□□ -1.51
VPS29-203ENST00000546588 SS18Q15532 418 aa5.63□□□□□ -1.51
VPS29-203ENST00000546588 SFTA2Q6UW10 78 aa5.63□□□□□ -1.51
VPS29-203ENST00000546588 VPS13DQ5THJ4 4388 aa5.63□□□□□ -1.51
VPS29-203ENST00000546588 MYMXA0A1B0GTQ4 84 aa5.62□□□□□ -1.51
VPS29-203ENST00000546588 MAPKAPK5-AS1Q8N8E1 139 aa5.62□□□□□ -1.51
VPS29-203ENST00000546588 ZNF625Q96I27 306 aaPredicted RBP5.62□□□□□ -1.51
VPS29-203ENST00000546588 TRAV8-3A0A0A6YYJ7 113 aa5.61□□□□□ -1.51
VPS29-203ENST00000546588 NDUFA1O15239 70 aa5.61□□□□□ -1.51
VPS29-203ENST00000546588 LGALS3P17931 250 aaKnown RBP5.61□□□□□ -1.51
VPS29-203ENST00000546588 Q8IZM0 81 aa5.61□□□□□ -1.51
VPS29-203ENST00000546588 CHCHD10Q8WYQ3 142 aaPredicted RBP5.61□□□□□ -1.51
VPS29-203ENST00000546588 TIMM17BO60830 172 aa5.6□□□□□ -1.51
VPS29-203ENST00000546588 CEND1Q8N111 149 aa5.6□□□□□ -1.51
VPS29-203ENST00000546588 MUC7Q8TAX7 377 aa5.6□□□□□ -1.51
VPS29-203ENST00000546588 DSCR8Q96T75 97 aa5.6□□□□□ -1.51
VPS29-203ENST00000546588 TTTY13Q9BZ97 58 aa5.6□□□□□ -1.51
VPS29-203ENST00000546588 KLK12Q9UKR0 248 aa5.6□□□□□ -1.51
VPS29-203ENST00000546588 IGHV3-64A0A075B6Q5 118 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 IGHV3-30P01768 117 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 IGHV3-33P01772 117 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 CRPP02741 224 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 IGHV3-30-5P0DP03 117 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 PSMB2P49721 201 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 KIAA0087Q14695 138 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 LITAFQ99732 161 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 TP73-AS1Q9UF72 201 aa5.59□□□□□ -1.51
VPS29-203ENST00000546588 A0A0J9YXY3 114 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 ZNF815PA8K554 130 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 COX7A2LO14548 114 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 TCL1BO95988 128 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 SCGB1C2P0DMR2 95 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 XCL1P47992 114 aa5.58□□□□□ -1.52
VPS29-203ENST00000546588 ATP5EP56381 51 aaPredicted RBP5.58□□□□□ -1.52
VPS29-203ENST00000546588 SRSF9Q13242 221 aaKnown RBP eCLIP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms