RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NPC2	P61916	151 aa		6.43	□□□□□ -1.38
CPSF7-221	ENST00000543545	ADAMTSL4-AS1	Q5T5F5	129 aa		6.43	□□□□□ -1.38
CPSF7-221	ENST00000543545	PLAC8	Q9NZF1	115 aa		6.43	□□□□□ -1.38
CPSF7-221	ENST00000543545	RPL24	P83731	157 aa	Known RBP	6.42	□□□□□ -1.38
CPSF7-221	ENST00000543545	SLC25A34	Q6PIV7	304 aa		6.42	□□□□□ -1.38
CPSF7-221	ENST00000543545	BOD1L2	Q8IYS8	172 aa		6.42	□□□□□ -1.38
CPSF7-221	ENST00000543545	RYR1	P21817	5038 aa		6.42	□□□□□ -1.38
CPSF7-221	ENST00000543545	SMR3B	P02814	79 aa	Predicted RBP	6.41	□□□□□ -1.38
CPSF7-221	ENST00000543545	SMIM6	P0DI80	62 aa		6.41	□□□□□ -1.38
CPSF7-221	ENST00000543545	SRSF9	Q13242	221 aa	Known RBP eCLIP	6.41	□□□□□ -1.38
CPSF7-221	ENST00000543545	SERTAD4-AS1	Q5TG53	156 aa		6.41	□□□□□ -1.38
CPSF7-221	ENST00000543545	NKAPP1	Q8N9T2	125 aa		6.41	□□□□□ -1.38
CPSF7-221	ENST00000543545	APOB	P04114	4563 aa	Known RBP	6.41	□□□□□ -1.38
CPSF7-221	ENST00000543545		M0QXV9	152 aa		6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	DLEU1	O43261	78 aa		6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	LBH	Q53QV2	105 aa	Predicted RBP	6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	PHF5A	Q7RTV0	110 aa	Known RBP	6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	C7orf33	Q8WU49	177 aa		6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	LITAF	Q99732	161 aa		6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	TP73-AS1	Q9UF72	201 aa		6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	C22orf24	Q9Y442	160 aa		6.4	□□□□□ -1.38
CPSF7-221	ENST00000543545	GAGE10	A6NGK3	116 aa		6.39	□□□□□ -1.39
CPSF7-221	ENST00000543545	UBE2B	P63146	152 aa		6.39	□□□□□ -1.39
CPSF7-221	ENST00000543545	LINC00308	Q8TCZ7	52 aa		6.39	□□□□□ -1.39
CPSF7-221	ENST00000543545	COPS9	Q8WXC6	57 aa		6.39	□□□□□ -1.39
CPSF7-221	ENST00000543545	PLA2G2D	Q9UNK4	145 aa		6.39	□□□□□ -1.39
CPSF7-221	ENST00000543545		Q6ZVH6	145 aa		6.38	□□□□□ -1.39
CPSF7-221	ENST00000543545	KRTAP7-1	Q8IUC3	87 aa		6.38	□□□□□ -1.39
CPSF7-221	ENST00000543545	HIST1H4G	Q99525	98 aa		6.38	□□□□□ -1.39
CPSF7-221	ENST00000543545	SPANXD	Q9BXN6	97 aa		6.38	□□□□□ -1.39
CPSF7-221	ENST00000543545	SPANXC	Q9NY87	97 aa		6.38	□□□□□ -1.39
CPSF7-221	ENST00000543545	KIAA1109	Q2LD37	5005 aa		6.38	□□□□□ -1.39
CPSF7-221	ENST00000543545	NCR3	O14931	201 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	VPREB1	P12018	145 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	IFITM1	P13164	125 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	PRR3	P79522	188 aa	Known RBP	6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	SOSTDC1	Q6X4U4	206 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	MRPL55	Q7Z7F7	128 aa	Known RBP	6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	MUSTN1	Q8IVN3	82 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	LINC00528	Q8N1L1	170 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	PRO1933	Q9H354	126 aa		6.37	□□□□□ -1.39
CPSF7-221	ENST00000543545	IGLV5-37	A0A075B6J1	123 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	LOC107984156	A0A0G2JMH3	177 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	RPL37AP8	A6NKH3	93 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	EPM2A	B3EWF7	344 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	FAM229A	H3BQW9	127 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545		M0R378	163 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	EIF4EBP3	O60516	100 aa	Predicted RBP	6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	ARL17A	Q8IVW1	177 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545		Q8NDZ9	215 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	SPANXB1	Q9NS25	103 aa	Predicted RBP	6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	UQCR10	Q9UDW1	63 aa		6.36	□□□□□ -1.39
CPSF7-221	ENST00000543545	LINC00167	Q96N53	147 aa		6.35	□□□□□ -1.39
CPSF7-221	ENST00000543545	C12orf57	Q99622	126 aa		6.35	□□□□□ -1.39
CPSF7-221	ENST00000543545	NDUFC2	O95298	119 aa		6.34	□□□□□ -1.39
CPSF7-221	ENST00000543545	RPL37A	P61513	92 aa	Known RBP	6.34	□□□□□ -1.39
CPSF7-221	ENST00000543545	S100A7L2	Q5SY68	101 aa		6.34	□□□□□ -1.39
CPSF7-221	ENST00000543545	C2orf91	Q6ZV80	131 aa		6.34	□□□□□ -1.39
CPSF7-221	ENST00000543545	OR13C6P	Q8NH95	151 aa		6.34	□□□□□ -1.39
CPSF7-221	ENST00000543545	HIGD1B	Q9P298	99 aa		6.34	□□□□□ -1.39
CPSF7-221	ENST00000543545	HSPG2	P98160	4391 aa		6.33	□□□□□ -1.4
CPSF7-221	ENST00000543545	IGKV2-28	A0A075B6P5	120 aa		6.33	□□□□□ -1.4
CPSF7-221	ENST00000543545	IGKV2D-28	P01615	120 aa		6.33	□□□□□ -1.4
CPSF7-221	ENST00000543545	PLA2G1B	P04054	148 aa	Known RBP	6.33	□□□□□ -1.4
CPSF7-221	ENST00000543545	HNRNPA3	P51991	378 aa	Known RBP	6.33	□□□□□ -1.4
CPSF7-221	ENST00000543545	LINC00518	Q8N0U6	118 aa		6.33	□□□□□ -1.4
CPSF7-221	ENST00000543545	TRBV10-2	A0A0K0K1G8	114 aa		6.32	□□□□□ -1.4
CPSF7-221	ENST00000543545		Q8N1X5	172 aa		6.32	□□□□□ -1.4
CPSF7-221	ENST00000543545	TSTD3	H0UI37	97 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545	DDT	P30046	118 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545	C1orf137	Q5JT78	98 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545		Q5VSD8	79 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545	KRTAP11-1	Q8IUC1	163 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545	PPDPF	Q9H3Y8	114 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545	PSORS1C2	Q9UIG4	136 aa		6.31	□□□□□ -1.4
CPSF7-221	ENST00000543545	FAT1	Q14517	4588 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545	HERC2	O95714	4834 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545	IGLV1-50	A0A075B6I6	118 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545	TRBV10-3	A0A0K0K1G6	114 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545		A4D1N5	150 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545		A6NDN8	102 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545	TAL2	Q16559	108 aa		6.3	□□□□□ -1.4
CPSF7-221	ENST00000543545	HSD52	Q0P140	79 aa		6.29	□□□□□ -1.4
CPSF7-221	ENST00000543545	CEND1	Q8N111	149 aa		6.29	□□□□□ -1.4
CPSF7-221	ENST00000543545	TMEM126A	Q9H061	195 aa		6.29	□□□□□ -1.4
CPSF7-221	ENST00000543545	TRAV13-2	A0A0B4J235	113 aa		6.28	□□□□□ -1.4
CPSF7-221	ENST00000543545	REG3G	Q6UW15	175 aa		6.28	□□□□□ -1.4
CPSF7-221	ENST00000543545	CBY1	Q9Y3M2	126 aa		6.28	□□□□□ -1.4
CPSF7-221	ENST00000543545	TMEM238L	A0A1B0GVL6	79 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545		A6NJY4	79 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545	PRY	O14603	147 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545	IGLV6-57	P01721	117 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545	UBE2A	P49459	152 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545	LINC00337	Q8N6G1	96 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545	RAB37	Q96AX2	223 aa		6.27	□□□□□ -1.41
CPSF7-221	ENST00000543545	TRAV23DV6	A0A075B6W5	121 aa		6.26	□□□□□ -1.41
CPSF7-221	ENST00000543545	BCE1	O60756	84 aa		6.26	□□□□□ -1.41
CPSF7-221	ENST00000543545	CTAG1A	P78358	180 aa		6.26	□□□□□ -1.41
CPSF7-221	ENST00000543545	FAM19A1	Q7Z5A9	133 aa		6.26	□□□□□ -1.41
CPSF7-221	ENST00000543545	KRTAP17-1	Q9BYP8	105 aa		6.26	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms