RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CLPSL1A2RUU4 121 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 H0Y9P7 68 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 K7EIM0 57 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 NDUFA4O00483 81 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 IGKV4-1P06312 121 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 RPL39P62891 51 aaKnown RBP1.82□□□□□ -2.12
USP28-210ENST00000542033 SMIM11BQ8TCY0 68 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 GAFA1Q96PS6 74 aa1.82□□□□□ -2.12
USP28-210ENST00000542033 PLXNB1O43157 2135 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 ZGRF1Q86YA3 2104 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 SPRR5A0A1B0GTR4 108 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 LY6EQ16553 131 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 DEFB133Q30KQ1 61 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 C1orf137Q5JT78 98 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 C10orf55Q5SWW7 151 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 CSAG1Q6PB30 78 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 SPATA8Q6RVD6 105 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 SPINT4Q6UDR6 99 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 TTTY12Q9BZ98 90 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 ARHGAP32A7KAX9 2087 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 GOLGB1Q14789 3259 aaKnown RBP1.81□□□□□ -2.12
USP28-210ENST00000542033 ZNF407Q9C0G0 2248 aa1.81□□□□□ -2.12
USP28-210ENST00000542033 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.8□□□□□ -2.12
USP28-210ENST00000542033 A8MUU9 505 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 A8MWP4 228 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 M0QY20 66 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 TFF1P04155 84 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 COX7BP24311 80 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 PI4KAP42356 2102 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 LINC00158P58513 81 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 IGFL1Q6UW32 110 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 Q6ZTI0 123 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 DEFB108BQ8NET1 73 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 DMAC1Q96GE9 116 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 KAAG1Q9UBP8 84 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 FAM215AQ9Y5M1 114 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 FREM1Q5H8C1 2179 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 KNTC1P50748 2209 aa1.8□□□□□ -2.12
USP28-210ENST00000542033 PRR14LQ5THK1 2151 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 MUC4Q99102 2169 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 TRGV4A0A0C4DH28 118 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 TRBV6-4A0A1B0GX49 114 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 UQCR11O14957 56 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 APELAP0DMC3 54 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 RNASE3P12724 160 aaKnown RBP1.79□□□□□ -2.12
USP28-210ENST00000542033 KLK9Q2XQG4 91 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 KRTAP25-1Q3LHN0 102 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 ADM2Q7Z4H4 148 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 COA5Q86WW8 74 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 C20orf166-AS1Q96NR2 134 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 SPRR4Q96PI1 79 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 MALRD1Q5VYJ5 2156 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 MED13Q9UHV7 2174 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 RTTNQ86VV8 2226 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 CENPFP49454 3210 aa1.79□□□□□ -2.12
USP28-210ENST00000542033 CCL3L1P16619 93 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 CCL18P55774 89 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 SPINK7P58062 85 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 KRTAP10-10P60014 251 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 DEFB103AP81534 67 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 COX17Q14061 63 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 DEFB112Q30KQ8 113 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 KRTAP26-1Q6PEX3 210 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 C9orf163Q8N9P6 203 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 CDKN2A-AS1Q9UH64 79 aa1.78□□□□□ -2.12
USP28-210ENST00000542033 DNAH12Q6ZR08 3092 aa1.77□□□□□ -2.13
USP28-210ENST00000542033 DOCK10Q96BY6 2186 aa1.77□□□□□ -2.13
USP28-210ENST00000542033 P0C880 135 aa1.77□□□□□ -2.13
USP28-210ENST00000542033 MINOS1Q5TGZ0 78 aa1.77□□□□□ -2.13
USP28-210ENST00000542033 LINC00575Q6W349 94 aa1.77□□□□□ -2.13
USP28-210ENST00000542033 MINOS1-NBL1R4GNA1 71 aa1.77□□□□□ -2.13
USP28-210ENST00000542033 TNCP24821 2201 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 DEFB131BA0A096LNP1 70 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 NUPR2A6NF83 97 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 ODF3BA8MYP8 253 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 H3BUA1 57 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 USMG5Q96IX5 58 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 SEC16AO15027 2179 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 CR1P17927 2039 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 ZFHX3Q15911 3703 aa1.76□□□□□ -2.13
USP28-210ENST00000542033 LINC00959A0A1B0GUT2 108 aa1.75□□□□□ -2.13
USP28-210ENST00000542033 COX6A2Q02221 97 aa1.75□□□□□ -2.13
USP28-210ENST00000542033 PRR9Q5T870 116 aa1.75□□□□□ -2.13
USP28-210ENST00000542033 Q6ZQY7 126 aa1.75□□□□□ -2.13
USP28-210ENST00000542033 M0R2N4 97 aa1.74□□□□□ -2.13
USP28-210ENST00000542033 DEFB113Q30KQ7 82 aa1.74□□□□□ -2.13
USP28-210ENST00000542033 DEFB119Q8N690 84 aa1.74□□□□□ -2.13
USP28-210ENST00000542033 TOMM7Q9P0U1 55 aa1.74□□□□□ -2.13
USP28-210ENST00000542033 DNAJC13O75165 2243 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 IGKV3-7A0A075B6H7 116 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 A0A096LNT2 108 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 KRTAP13-2Q52LG2 175 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 Q8IZM0 81 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 DEFB104AQ8WTQ1 72 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 RHPN1-AS1Q9BWJ2 59 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 WDR87Q6ZQQ6 2873 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 COL6A3P12111 3177 aa1.73□□□□□ -2.13
USP28-210ENST00000542033 ASCC3Q8N3C0 2202 aaKnown RBP1.72□□□□□ -2.13
USP28-210ENST00000542033 CEP350Q5VT06 3117 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 133.9 ms