RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 TSPAN13O95857 204 aa4.8□□□□□ -1.64
VPS53-205ENST00000541903 Q6ZRP5 223 aa4.8□□□□□ -1.64
VPS53-205ENST00000541903 Q8N814 137 aa4.8□□□□□ -1.64
VPS53-205ENST00000541903 LCE6AA0A183 80 aa4.79□□□□□ -1.64
VPS53-205ENST00000541903 PSMB2P49721 201 aa4.79□□□□□ -1.64
VPS53-205ENST00000541903 GAGE2BQ13066 116 aa4.79□□□□□ -1.64
VPS53-205ENST00000541903 LYRM7Q5U5X0 104 aa4.79□□□□□ -1.64
VPS53-205ENST00000541903 NAA38Q9BRA0 125 aaKnown RBP4.79□□□□□ -1.64
VPS53-205ENST00000541903 CSMD3Q7Z407 3707 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 IGKV2-28A0A075B6P5 120 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 A0A1W2PPM0 123 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 NCR3O14931 201 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 IGKV2D-28P01615 120 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 FABP2P12104 132 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 VAMP3Q15836 100 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 OR13C6PQ8NH95 151 aa4.78□□□□□ -1.64
VPS53-205ENST00000541903 TRBV10-2A0A0K0K1G8 114 aa4.77□□□□□ -1.65
VPS53-205ENST00000541903 S100A7L2Q5SY68 101 aa4.77□□□□□ -1.65
VPS53-205ENST00000541903 C9orf129Q5T035 196 aaKnown RBP4.77□□□□□ -1.65
VPS53-205ENST00000541903 LINC00337Q8N6G1 96 aa4.77□□□□□ -1.65
VPS53-205ENST00000541903 KRTAP17-1Q9BYP8 105 aa4.77□□□□□ -1.65
VPS53-205ENST00000541903 ALMS1Q8TCU4 4167 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 C16orf90A8MZG2 172 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 COX6CP09669 75 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 SCGB1C2P0DMR2 95 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 VPREB1P12018 145 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 PRR3P79522 188 aaKnown RBP4.76□□□□□ -1.65
VPS53-205ENST00000541903 C9orf163Q8N9P6 203 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 NKAPP1Q8N9T2 125 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 Q8NDZ9 215 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 TMEM126AQ9H061 195 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 SPCS1Q9Y6A9 102 aa4.76□□□□□ -1.65
VPS53-205ENST00000541903 A0A096LNI7 61 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 IGLV5-52A0A0A0MRZ9 124 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 IGKV2-24A0A0C4DH68 120 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 M0R378 163 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 RTL8CO15255 209 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 TNP2Q05952 138 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 GTF2H5Q6ZYL4 71 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 PLA2G2DQ9UNK4 145 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 DNAH1Q9P2D7 4330 aa4.75□□□□□ -1.65
VPS53-205ENST00000541903 VPS13DQ5THJ4 4388 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 K7EP34 96 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 TRIAP1O43715 76 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 RPL28P46779 137 aaKnown RBP4.74□□□□□ -1.65
VPS53-205ENST00000541903 SERTAD4-AS1Q5TG53 156 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 FAM19A5Q7Z5A7 132 aaPredicted RBP4.74□□□□□ -1.65
VPS53-205ENST00000541903 LINC00474Q9P2X8 69 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 CBY1Q9Y3M2 126 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 TENM2Q9NT68 2774 aa4.74□□□□□ -1.65
VPS53-205ENST00000541903 IGLV5-37A0A075B6J1 123 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 TRBV20-1A0A075B6N2 111 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 TRBV10-3A0A0K0K1G6 114 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 GAGE10A6NGK3 116 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 IGLV6-57P01721 117 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 LINC01620Q4KN68 170 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 SMIM11BQ8TCY0 68 aa4.73□□□□□ -1.65
VPS53-205ENST00000541903 TRAV23DV6A0A075B6W5 121 aa4.72□□□□□ -1.65
VPS53-205ENST00000541903 FAM168BA1KXE4 195 aa4.72□□□□□ -1.65
VPS53-205ENST00000541903 CHTF8P0CG12 524 aa4.72□□□□□ -1.65
VPS53-205ENST00000541903 SDIM1Q6ZPB5 146 aa4.72□□□□□ -1.65
VPS53-205ENST00000541903 C7orf33Q8WU49 177 aa4.72□□□□□ -1.65
VPS53-205ENST00000541903 LYSTQ99698 3801 aa4.71□□□□□ -1.65
VPS53-205ENST00000541903 M0QXV9 152 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 TCL1BO95988 128 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 FUSP35637 526 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS53-205ENST00000541903 UBE2V1Q13404 147 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 ATXN8Q156A1 80 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 LINC00336Q6ZUF6 198 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 MRPL55Q7Z7F7 128 aaKnown RBP4.71□□□□□ -1.66
VPS53-205ENST00000541903 DIRC1Q969H9 104 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 C22orf24Q9Y442 160 aa4.71□□□□□ -1.66
VPS53-205ENST00000541903 H0YGX0 51 aa4.7□□□□□ -1.66
VPS53-205ENST00000541903 C6orf99Q4VX62 202 aa4.7□□□□□ -1.66
VPS53-205ENST00000541903 CLEC2BQ92478 149 aa4.7□□□□□ -1.66
VPS53-205ENST00000541903 DPH3Q96FX2 82 aa4.7□□□□□ -1.66
VPS53-205ENST00000541903 RYR3Q15413 4870 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 A0A1W2PNN7 141 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 H3BMG7 143 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 PRYO14603 147 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 ZNF73O43830 326 aaPredicted RBP4.69□□□□□ -1.66
VPS53-205ENST00000541903 KRTAP7-1Q8IUC3 87 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 SPACA4Q8TDM5 124 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 LINC00167Q96N53 147 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 DNAH6Q9C0G6 4158 aa4.69□□□□□ -1.66
VPS53-205ENST00000541903 IGLV1-50A0A075B6I6 118 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 RPL37AP8A6NKH3 93 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 LST1O00453 97 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 SNCGO76070 127 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 COX7BP24311 80 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 KRTAP10-2P60368 255 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 KCNQ1DNQ9H478 68 aa4.68□□□□□ -1.66
VPS53-205ENST00000541903 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.68□□□□□ -1.66
VPS53-205ENST00000541903 KMT2CQ8NEZ4 4911 aaKnown RBP4.67□□□□□ -1.66
VPS53-205ENST00000541903 TRBV7-6A0A0J9YX20 115 aa4.67□□□□□ -1.66
VPS53-205ENST00000541903 PANO1I0J062 215 aa4.67□□□□□ -1.66
VPS53-205ENST00000541903 DNAL4O96015 105 aa4.67□□□□□ -1.66
VPS53-205ENST00000541903 TRACP01848 142 aa4.67□□□□□ -1.66
VPS53-205ENST00000541903 UBE2BP63146 152 aa4.67□□□□□ -1.66
VPS53-205ENST00000541903 A0A087WYN8 130 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms