RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 Q8NBF4 154 aa6.94□□□□□ -1.3
SNHG1-216ENST00000541416 CRCT1Q9UGL9 99 aa6.94□□□□□ -1.3
SNHG1-216ENST00000541416 SMCO4Q9NRQ5 59 aa6.93□□□□□ -1.3
SNHG1-216ENST00000541416 IGLV5-39A0A0G2JS06 123 aa6.92□□□□□ -1.3
SNHG1-216ENST00000541416 KIAA1644Q3SXP7 199 aa6.92□□□□□ -1.3
SNHG1-216ENST00000541416 FA2HQ7L5A8 372 aa6.91□□□□□ -1.3
SNHG1-216ENST00000541416 LINC01546A6NGU7 62 aa6.9□□□□□ -1.3
SNHG1-216ENST00000541416 IGLC3P0DOY3 106 aa6.9□□□□□ -1.3
SNHG1-216ENST00000541416 NDUFA6P56556 154 aa6.9□□□□□ -1.3
SNHG1-216ENST00000541416 ZNF625Q96I27 306 aaPredicted RBP6.9□□□□□ -1.3
SNHG1-216ENST00000541416 TRAV9-1A0A075B6T8 112 aa6.89□□□□□ -1.31
SNHG1-216ENST00000541416 PRYO14603 147 aa6.89□□□□□ -1.31
SNHG1-216ENST00000541416 LINC00158P58513 81 aa6.89□□□□□ -1.31
SNHG1-216ENST00000541416 S100A12P80511 92 aa6.89□□□□□ -1.31
SNHG1-216ENST00000541416 ATP6V1G1O75348 118 aa6.88□□□□□ -1.31
SNHG1-216ENST00000541416 ZNF22P17026 224 aaPredicted RBP6.88□□□□□ -1.31
SNHG1-216ENST00000541416 RPS29P62273 56 aaKnown RBP6.88□□□□□ -1.31
SNHG1-216ENST00000541416 ETDCA0A1B0GVM5 59 aa6.87□□□□□ -1.31
SNHG1-216ENST00000541416 SLC25A20O43772 301 aa6.87□□□□□ -1.31
SNHG1-216ENST00000541416 S100PP25815 95 aa6.86□□□□□ -1.31
SNHG1-216ENST00000541416 Q8NDZ9 215 aa6.86□□□□□ -1.31
SNHG1-216ENST00000541416 SMCR5Q8TEV8 140 aa6.86□□□□□ -1.31
SNHG1-216ENST00000541416 COX19Q49B96 90 aa6.85□□□□□ -1.31
SNHG1-216ENST00000541416 TMEM170BQ5T4T1 132 aa6.85□□□□□ -1.31
SNHG1-216ENST00000541416 SSBP3-AS1Q7Z2R9 100 aa6.85□□□□□ -1.31
SNHG1-216ENST00000541416 KRTAP4-1Q9BYQ7 146 aa6.85□□□□□ -1.31
SNHG1-216ENST00000541416 CFC1BP0CG36 223 aa6.84□□□□□ -1.31
SNHG1-216ENST00000541416 LINC00483Q53H64 154 aa6.84□□□□□ -1.31
SNHG1-216ENST00000541416 XP32Q5T750 250 aa6.84□□□□□ -1.31
SNHG1-216ENST00000541416 Q8N377 158 aa6.84□□□□□ -1.31
SNHG1-216ENST00000541416 IGLV9-49A0A0B4J1Y8 123 aa6.83□□□□□ -1.32
SNHG1-216ENST00000541416 SPRR1AP35321 89 aa6.83□□□□□ -1.32
SNHG1-216ENST00000541416 MOBPQ13875 183 aa6.83□□□□□ -1.32
SNHG1-216ENST00000541416 GAGE2AQ6NT46 116 aa6.83□□□□□ -1.32
SNHG1-216ENST00000541416 BOD1L2Q8IYS8 172 aa6.83□□□□□ -1.32
SNHG1-216ENST00000541416 KCNQ1DNQ9H478 68 aa6.83□□□□□ -1.32
SNHG1-216ENST00000541416 A0A0U1RRA0 63 aa6.82□□□□□ -1.32
SNHG1-216ENST00000541416 LINC00587B1AMM8 73 aa6.82□□□□□ -1.32
SNHG1-216ENST00000541416 FABP9Q0Z7S8 132 aa6.82□□□□□ -1.32
SNHG1-216ENST00000541416 NCR3O14931 201 aa6.81□□□□□ -1.32
SNHG1-216ENST00000541416 HBDP02042 147 aa6.81□□□□□ -1.32
SNHG1-216ENST00000541416 BAGE3Q86Y29 109 aa6.81□□□□□ -1.32
SNHG1-216ENST00000541416 C11orf86A6NJI1 115 aa6.8□□□□□ -1.32
SNHG1-216ENST00000541416 MEIG1Q5JSS6 88 aa6.8□□□□□ -1.32
SNHG1-216ENST00000541416 LINC00614P0C842 121 aa6.79□□□□□ -1.32
SNHG1-216ENST00000541416 HERV-K104P63124 156 aa6.79□□□□□ -1.32
SNHG1-216ENST00000541416 MAP1LC3CQ9BXW4 147 aa6.79□□□□□ -1.32
SNHG1-216ENST00000541416 SEC11CQ9BY50 192 aa6.79□□□□□ -1.32
SNHG1-216ENST00000541416 KRTAP3-3Q9BYR6 98 aa6.79□□□□□ -1.32
SNHG1-216ENST00000541416 KRTAP3-2Q9BYR7 98 aa6.79□□□□□ -1.32
SNHG1-216ENST00000541416 KRTAP4-16G5E9R7 235 aaPredicted RBP6.78□□□□□ -1.32
SNHG1-216ENST00000541416 SMIM13P0DJ93 91 aa6.78□□□□□ -1.32
SNHG1-216ENST00000541416 MIR7-3HGQ8N6C7 128 aa6.78□□□□□ -1.32
SNHG1-216ENST00000541416 CHTOPQ9Y3Y2 248 aaKnown RBP6.78□□□□□ -1.32
SNHG1-216ENST00000541416 TRBV10-3A0A0K0K1G6 114 aa6.77□□□□□ -1.33
SNHG1-216ENST00000541416 B5MCH6 92 aa6.77□□□□□ -1.33
SNHG1-216ENST00000541416 A0A096LNJ9 63 aa6.76□□□□□ -1.33
SNHG1-216ENST00000541416 C9orf153Q5TBE3 101 aa6.76□□□□□ -1.33
SNHG1-216ENST00000541416 TMEM223A0PJW6 202 aa6.75□□□□□ -1.33
SNHG1-216ENST00000541416 JOSD1Q15040 202 aaPredicted RBP6.75□□□□□ -1.33
SNHG1-216ENST00000541416 LCE2CQ5TA81 110 aa6.75□□□□□ -1.33
SNHG1-216ENST00000541416 DDTP30046 118 aa6.74□□□□□ -1.33
SNHG1-216ENST00000541416 MT1HP80294 61 aa6.74□□□□□ -1.33
SNHG1-216ENST00000541416 PMCHL1Q16048 86 aa6.74□□□□□ -1.33
SNHG1-216ENST00000541416 UQCC3Q6UW78 93 aa6.74□□□□□ -1.33
SNHG1-216ENST00000541416 Q6ZRX8 168 aa6.74□□□□□ -1.33
SNHG1-216ENST00000541416 LIMD2Q9BT23 127 aa6.74□□□□□ -1.33
SNHG1-216ENST00000541416 IGLV8-61A0A075B6I0 122 aa6.73□□□□□ -1.33
SNHG1-216ENST00000541416 TRBV10-2A0A0K0K1G8 114 aa6.73□□□□□ -1.33
SNHG1-216ENST00000541416 MYMXA0A1B0GTQ4 84 aa6.73□□□□□ -1.33
SNHG1-216ENST00000541416 TMEM218A2RU14 115 aa6.73□□□□□ -1.33
SNHG1-216ENST00000541416 ERC2-IT1O76042 136 aa6.73□□□□□ -1.33
SNHG1-216ENST00000541416 C18orf32Q8TCD1 76 aa6.73□□□□□ -1.33
SNHG1-216ENST00000541416 PCOTHQ58A44 107 aa6.72□□□□□ -1.33
SNHG1-216ENST00000541416 MIEN1Q9BRT3 115 aa6.72□□□□□ -1.33
SNHG1-216ENST00000541416 TRAV12-1A0A0B4J245 112 aa6.71□□□□□ -1.34
SNHG1-216ENST00000541416 CLLU1Q5K131 121 aa6.71□□□□□ -1.34
SNHG1-216ENST00000541416 S100A7L2Q5SY68 101 aa6.71□□□□□ -1.34
SNHG1-216ENST00000541416 Q9BRP9 147 aa6.71□□□□□ -1.34
SNHG1-216ENST00000541416 TRAPPC1Q9Y5R8 145 aa6.71□□□□□ -1.34
SNHG1-216ENST00000541416 C5orf52A6NGY3 159 aa6.7□□□□□ -1.34
SNHG1-216ENST00000541416 SLC25A34Q6PIV7 304 aa6.7□□□□□ -1.34
SNHG1-216ENST00000541416 URB1-AS1Q96HZ7 61 aa6.7□□□□□ -1.34
SNHG1-216ENST00000541416 SPANXB1Q9NS25 103 aaPredicted RBP6.7□□□□□ -1.34
SNHG1-216ENST00000541416 M0R2T5 61 aa6.69□□□□□ -1.34
SNHG1-216ENST00000541416 HINT1P49773 126 aaPredicted RBP6.69□□□□□ -1.34
SNHG1-216ENST00000541416 IFITM2Q01629 132 aa6.69□□□□□ -1.34
SNHG1-216ENST00000541416 KRTAP19-2Q3LHN2 52 aa6.69□□□□□ -1.34
SNHG1-216ENST00000541416 COMMD7Q86VX2 200 aa6.69□□□□□ -1.34
SNHG1-216ENST00000541416 IFI27L1Q96BM0 104 aa6.69□□□□□ -1.34
SNHG1-216ENST00000541416 CBY1Q9Y3M2 126 aa6.69□□□□□ -1.34
SNHG1-216ENST00000541416 LOC107984156A0A0G2JMH3 177 aa6.68□□□□□ -1.34
SNHG1-216ENST00000541416 RHEBQ15382 184 aa6.68□□□□□ -1.34
SNHG1-216ENST00000541416 ARL17AQ8IVW1 177 aa6.68□□□□□ -1.34
SNHG1-216ENST00000541416 TRAV23DV6A0A075B6W5 121 aa6.67□□□□□ -1.34
SNHG1-216ENST00000541416 C9orf92A6NGG3 77 aa6.67□□□□□ -1.34
SNHG1-216ENST00000541416 RPS10P5Q9NQ39 176 aa6.67□□□□□ -1.34
SNHG1-216ENST00000541416 NDUFC2O95298 119 aa6.66□□□□□ -1.34
SNHG1-216ENST00000541416 LORP23490 312 aaPredicted RBP6.66□□□□□ -1.34
SNHG1-216ENST00000541416 KRTAP10-6P60371 365 aaPredicted RBP6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms